Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR237890 Cardamine hirsuta HOM05D005423 ORTHO05D006223 5.4e-82 307.8 172 100.0
AL7G22260 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 4.0e-69 265.0 167 82.6
AT4G29980 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 1.2e-68 263.5 167 81.4
Carub.0007s1066 Capsella rubella HOM05D005423 ORTHO05D006223 2.4e-66 255.8 143 88.8
Sp7g27780 Schrenkiella parvula HOM05D005423 ORTHO05D006223 6.9e-61 237.7 143 83.2
Thhalv10026388m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 9.0e-61 237.3 140 85.7
A03p59360 Brassica napus HOM05D005423 ORTHO05D006223 6.6e-56 221.1 139 79.1
BraA03t14993Z Brassica rapa HOM05D005423 ORTHO05D006223 6.6e-56 221.1 139 79.1
C07p57390 Brassica napus HOM05D005423 ORTHO05D006223 1.1e-55 220.3 144 77.1
BolC7t46208H Brassica oleracea HOM05D005423 ORTHO05D006223 1.1e-55 220.3 144 77.1
BcaNung00507 Brassica carinata HOM05D005423 ORTHO05D006223 7.3e-55 217.6 140 80.0
Carub.0001s2910 Capsella rubella HOM05D005423 ORTHO05D006223 2.9e-35 152.5 178 50.6
BraA08t33095Z Brassica rapa HOM05D005423 ORTHO05D006223 3.8e-35 152.1 149 53.7
BcaC07g37806 Brassica carinata HOM05D005423 ORTHO05D006223 6.5e-35 151.4 149 53.7
BolC8t48195H Brassica oleracea HOM05D005423 ORTHO05D006223 6.5e-35 151.4 149 53.7
A08p11040 Brassica napus HOM05D005423 ORTHO05D006223 8.4e-35 151.0 149 53.0
BcaB04g18206 Brassica carinata HOM05D005423 ORTHO05D006223 1.4e-34 150.2 149 53.7
AL1G44970 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 1.6e-33 146.7 178 47.8
Sp1g26680 Schrenkiella parvula HOM05D005423 ORTHO05D006223 1.6e-33 146.7 178 47.2
Thhalv10009325m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 6.0e-33 144.8 181 46.4
Carub.0006s3088 Capsella rubella HOM05D005423 ORTHO05D006223 1.9e-31 139.8 181 51.4
CARHR030270 Cardamine hirsuta HOM05D005423 ORTHO05D006223 3.3e-31 139.0 173 44.5
AT1G30800 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 2.2e-30 136.3 151 49.7
Aa31LG6G12020 Aethionema arabicum HOM05D005423 ORTHO05D006223 4.8e-30 135.2 175 44.0
THA.LOC104814335 Tarenaya hassleriana HOM05D005423 ORTHO05D006223 6.9e-29 131.3 143 49.7
C08p24310 Brassica napus HOM05D005423 ORTHO05D006223 1.7e-27 126.7 146 47.3
BolC8t50049H Brassica oleracea HOM05D005423 ORTHO05D006223 2.2e-27 126.3 146 47.3
A06p18470 Brassica napus HOM05D005423 ORTHO05D006223 6.5e-27 124.8 146 46.6
BcaB01g00727 Brassica carinata HOM05D005423 ORTHO05D006223 1.9e-26 123.2 146 45.9
AT4G12950 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 2.5e-26 122.9 137 48.2
BcaC07g39399 Brassica carinata HOM05D005423 ORTHO05D006223 7.2e-26 121.3 146 45.9
A03p59580 Brassica napus HOM05D005423 ORTHO05D006223 1.5e-23 113.6 130 45.4
Sp7g28070 Schrenkiella parvula HOM05D005423 ORTHO05D006223 4.3e-23 112.1 139 44.6
BraA03t15014Z Brassica rapa HOM05D005423 ORTHO05D006223 6.3e-22 108.2 130 45.4
Thhalv10027436m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 2.4e-21 106.3 131 41.2
TWI38G0231 Tripterygium wilfordii HOM05D005423 ORTHO05D006223 3.1e-21 105.9 141 44.0
CANSAT35G1706 Cannabis sativa HOM05D005423 ORTHO05D006223 6.9e-21 104.8 146 38.4
Atru.chr10.659 Acer truncatum HOM05D005423 ORTHO05D006223 9.1e-21 104.4 135 43.0
Duzib160G0446 Durio zibethinus HOM05D005423 ORTHO05D006223 9.1e-21 104.4 146 41.8
Solyc11g072680.1 Solanum lycopersicum HOM05D005423 ORTHO05D006223 9.1e-21 104.4 137 41.6
Sopen11g030350 Solanum pennellii HOM05D005423 ORTHO05D006223 1.5e-20 103.6 137 41.6
Thecc.06G005400 Theobroma cacao HOM05D005423 ORTHO05D006223 1.5e-20 103.6 144 40.3
MD00G1097400 Malus domestica HOM05D005423 ORTHO05D006223 2.0e-20 103.2 133 39.8
Sc04g0008360 Simmondsia chinensis HOM05D005423 ORTHO05D006223 2.0e-20 103.2 131 42.7
Hma1.2p1_0410F.1_g147050 Hydrangea macrophylla HOM05D005423 ORTHO05D006223 3.4e-20 102.4 127 43.3
PGSC0003DMG400025363 Solanum tuberosum HOM05D005423 ORTHO05D006223 3.4e-20 102.4 137 39.4
FvH4_3g11440 Fragaria vesca HOM05D005423 ORTHO05D006223 4.5e-20 102.1 133 39.8
TAR636G0950 Trochodendron aralioides HOM05D005423 ORTHO05D006223 4.5e-20 102.1 140 41.4
Potri.001G440800 Populus trichocarpa HOM05D005423 ORTHO05D006223 5.9e-20 101.7 138 42.0
TPR.G22906 Trifolium pratense HOM05D005423 ORTHO05D006223 5.9e-20 101.7 150 36.7
CAN.G84.20 Capsicum annuum HOM05D005423 ORTHO05D006223 7.7e-20 101.3 137 37.2
Prupe.4G102300 Prunus persica HOM05D005423 ORTHO05D006223 7.7e-20 101.3 133 39.1
FAN16G1003 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.3e-19 100.5 133 39.1
Gohir.D02G104700 Gossypium hirsutum HOM05D005423 ORTHO05D006223 2.2e-19 99.8 153 37.9
Gorai.005G118900 Gossypium raimondii HOM05D005423 ORTHO05D006223 2.2e-19 99.8 153 37.9
Aqoxy2G01436 Aquilegia oxysepala HOM05D005423 ORTHO05D006223 2.9e-19 99.4 141 38.3
AL7G23570 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 2.9e-19 99.4 133 40.6
Nitab4.5_0004015g0040 Nicotiana tabacum HOM05D005423 ORTHO05D006223 6.5e-19 98.2 142 36.6
Gohir.A02G088801 Gossypium hirsutum HOM05D005423 ORTHO05D006223 8.5e-19 97.8 153 37.3
Glyma.15G191500 Glycine max HOM05D005423 ORTHO05D006223 1.4e-18 97.1 131 38.9
Ciclev10017493m.g Citrus clementina HOM05D005423 ORTHO05D006223 1.9e-18 96.7 144 38.2
Lsat_1_v5_gn_1_91741 Lactuca sativa HOM05D005423 ORTHO05D006223 1.9e-18 96.7 150 34.7
Nitab4.5_0006659g0010 Nicotiana tabacum HOM05D005423 ORTHO05D006223 1.9e-18 96.7 142 35.9
Cfa000754 Carpinus fangiana HOM05D005423 ORTHO05D006223 3.2e-18 95.9 143 37.8
Manes.03G066900 Manihot esculenta HOM05D005423 ORTHO05D006223 3.2e-18 95.9 136 39.7
Sc21g0002210 Simmondsia chinensis HOM05D005423 ORTHO05D006223 3.2e-18 95.9 135 40.0
Lj1P1155T48 Lonicera japonica HOM05D005423 ORTHO05D006223 5.5e-18 95.1 143 38.5
Psat1g018720 Pisum sativum HOM05D005423 ORTHO05D006223 9.4e-18 94.4 139 37.4
Sc21g0002200 Simmondsia chinensis HOM05D005423 ORTHO05D006223 9.4e-18 94.4 135 37.0
Rhsim13G0126500 Rhododendron simsii HOM05D005423 ORTHO05D006223 1.2e-17 94.0 145 34.5
Medtr2g047120 Medicago truncatula HOM05D005423 ORTHO05D006223 2.7e-17 92.8 138 34.8
Ah.02g124440 Amaranthus hybridus HOM05D005423 ORTHO05D006223 6.1e-17 91.7 149 34.2
Carub.0007s1174 Capsella rubella HOM05D005423 ORTHO05D006223 6.1e-17 91.7 129 39.5
Ca_02385_v3 Cicer arietinum L. HOM05D005423 ORTHO05D006223 1.0e-16 90.9 138 37.0
Lj6g0018842 Lotus japonicus HOM05D005423 ORTHO05D006223 1.4e-16 90.5 142 37.3
HanXRQChr01g0020631 Helianthus annuus HOM05D005423 ORTHO05D006223 1.8e-16 90.1 144 31.9
CiPaw.09G149100 Carya illinoinensis HOM05D005423 ORTHO05D006223 8.8e-16 87.8 148 33.8
EL10Ac5g10610 Beta vulgaris HOM05D005423 ORTHO05D006223 1.5e-15 87.0 141 31.9
AUR62008092 Chenopodium quinoa HOM05D005423 ORTHO05D006223 1.5e-15 87.0 134 35.1
BcaC09g50401 Brassica carinata HOM05D005423 ORTHO05D006223 2.0e-15 86.7 65 61.5
AUR62028668 Chenopodium quinoa HOM05D005423 ORTHO05D006223 2.0e-15 86.7 134 32.8
BcaC07g40588 Brassica carinata HOM05D005423 ORTHO05D006223 2.6e-15 86.3 65 63.1
COL.COLO4_26869 Corchorus olitorius HOM05D005423 ORTHO05D006223 2.6e-15 86.3 127 39.4
Haze_05969 Corylus avellana HOM05D005423 ORTHO05D006223 2.6e-15 86.3 99 41.4
Migut.M01932 Erythranthe guttata HOM05D005423 ORTHO05D006223 2.6e-15 86.3 148 34.5
C07p57610 Brassica napus HOM05D005423 ORTHO05D006223 3.3e-15 85.9 130 38.5
AUR62008091 Chenopodium quinoa HOM05D005423 ORTHO05D006223 4.4e-15 85.5 134 33.6
AUR62028667 Chenopodium quinoa HOM05D005423 ORTHO05D006223 5.7e-15 85.1 134 32.8
FAN21G0600 Fragaria x ananassa HOM05D005423 ORTHO05D006223 5.7e-15 85.1 88 44.3
SGA_v2.0_scaffold1G00298 Striga asiatica HOM05D005423 ORTHO05D006223 5.7e-15 85.1 134 38.8
FAN25G0767 Fragaria x ananassa HOM05D005423 ORTHO05D006223 9.7e-15 84.3 88 43.2
AUR62008089 Chenopodium quinoa HOM05D005423 ORTHO05D006223 1.3e-14 84.0 149 33.6
Sabra16G0298100 Salix brachista HOM05D005423 ORTHO05D006223 1.7e-14 83.6 100 41.0
Sabra16G0300100 Salix brachista HOM05D005423 ORTHO05D006223 1.7e-14 83.6 100 41.0
EL10Ac5g10674 Beta vulgaris HOM05D005423 ORTHO05D006223 2.2e-14 83.2 150 30.0
QL05p063092 Quercus lobata HOM05D005423 ORTHO05D006223 2.2e-14 83.2 138 32.6
EL10Ac5g10640 Beta vulgaris HOM05D005423 ORTHO05D006223 4.8e-14 82.0 151 31.1
BolC7t46226H Brassica oleracea HOM05D005423 ORTHO05D006223 6.3e-14 81.6 130 36.9
PSO782G2497 Papaver somniferum HOM05D005423 ORTHO05D006223 1.8e-13 80.1 138 33.3
Lalb_Chr11g0073251 Lupinus albus HOM05D005423 ORTHO05D006223 3.1e-13 79.3 145 35.2
AL7G23530 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 1.2e-12 77.4 92 45.7
CDE04G2898 Ceratophyllum demersum HOM05D005423 ORTHO05D006223 1.2e-12 77.4 143 35.7
MBI19_g30013_MAGBIO Magnolia biondii HOM05D005423 ORTHO05D006223 2.0e-12 76.6 153 31.4
CARHR238100 Cardamine hirsuta HOM05D005423 ORTHO05D006223 3.4e-12 75.9 77 49.4
Oeu000496.1 Olea europaea HOM05D005423 ORTHO05D006223 7.7e-12 74.7 79 40.5
CDE04G0856 Ceratophyllum demersum HOM05D005423 ORTHO05D006223 2.9e-11 72.8 132 32.6
A09p38220 Brassica napus HOM05D005423 ORTHO05D006223 6.5e-11 71.6 53 62.3
Oeu063151.1 Olea europaea HOM05D005423 ORTHO05D006223 1.9e-10 70.1 77 40.3
CDE02G2420 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 3.2e-10 69.3 130 33.8
AUR62007135 Chenopodium quinoa HOM05D005423 ORTHO05D006223 8.0e-09 64.7 109 36.7
FvH4_1g24910 Fragaria vesca HOM05D005423 ORTHO05D006223 1.4e-08 63.9 87 39.1
FvH4_5g18240 Fragaria vesca HOM05D005423 ORTHO05D006223 1.4e-08 63.9 97 40.2
Phvul.009G218400 Phaseolus vulgaris HOM05D005423 ORTHO05D006223 1.4e-08 63.9 95 40.0
C09p04090 Brassica napus HOM05D005423 ORTHO05D006223 1.8e-08 63.5 51 56.9
FAN18G3875 Fragaria x ananassa HOM05D005423 ORTHO05D006223 6.7e-08 61.6 97 40.2
CSS0002540 Camellia sinensis var. sinensis HOM05D007205 ORTHO05D009175 1.1e-07 60.8 123 33.3
arahy.Tifrunner.gnm1.ann1.A4HJXM Arachis hypogaea HOM05D002727 ORTHO05D002856 7.4e-07 58.2 95 31.6
PSO210G3101 Papaver somniferum HOM05D005423 ORTHO05D006223 7.4e-07 58.2 69 39.1
arahy.Tifrunner.gnm1.ann1.L56H08 Arachis hypogaea HOM05D002727 ORTHO05D002856 2.2e-06 56.6 94 30.9
Mapoly0033s0033 Marchantia polymorpha HOM05D005423 ORTHO05D006223 2.2e-06 56.6 129 30.2
FvH4_5g21920 Fragaria vesca HOM05D005423 ORTHO05D006223 2.8e-06 56.2 92 33.7
Pp3c3_10930 Physcomitrium patens HOM05D022662 ORTHO05D006223 3.7e-06 55.8 74 35.1
MBI19_g33491_MAGBIO Magnolia biondii HOM05D005423 ORTHO05D006223 4.8e-06 55.5 112 31.2
Aqoxy2G00583 Aquilegia oxysepala HOM05D007205 ORTHO05D009175 6.3e-06 55.1 97 27.8


User provided reference genes

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