Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR237780 Cardamine hirsuta HOM05D006260 ORTHO05D007860 5.5e-90 334.3 177 100.0
Thhalv10026375m.g Eutrema salsugineum HOM05D006260 ORTHO05D007860 1.2e-87 326.6 177 97.7
Sp7g27680 Schrenkiella parvula HOM05D006260 ORTHO05D007860 1.3e-86 323.2 177 95.5
Aa31LG2G20680 Aethionema arabicum HOM05D006260 ORTHO05D007860 3.1e-85 318.5 177 93.8
AL7G22380 Arabidopsis lyrata HOM05D006260 ORTHO05D007860 2.0e-84 315.8 177 96.0
A01p08290 Brassica napus HOM05D006260 ORTHO05D007860 2.9e-83 312.0 177 91.5
BraA01t00777Z Brassica rapa HOM05D006260 ORTHO05D007860 2.9e-83 312.0 177 91.5
Carub.0004s1476 Capsella rubella HOM05D006260 ORTHO05D007860 1.1e-82 310.1 178 93.8
C01p09330 Brassica napus HOM05D006260 ORTHO05D007860 4.2e-82 308.1 177 91.5
BolC1t00921H Brassica oleracea HOM05D006260 ORTHO05D007860 4.2e-82 308.1 177 91.5
Carub.0003s3356 Capsella rubella HOM05D006260 ORTHO05D007860 4.2e-82 308.1 177 88.1
AT4G29870 Arabidopsis thaliana HOM05D006260 ORTHO05D007860 9.5e-82 307.0 177 93.2
A03p59290 Brassica napus HOM05D006260 ORTHO05D007860 1.4e-80 303.1 177 88.1
BraA03t14986Z Brassica rapa HOM05D006260 ORTHO05D007860 2.3e-80 302.4 177 88.1
CARHR109790 Cardamine hirsuta HOM05D006260 ORTHO05D007860 1.2e-79 300.1 177 86.4
C07p57300 Brassica napus HOM05D006260 ORTHO05D007860 5.7e-79 297.7 177 86.4
BolC7t46199H Brassica oleracea HOM05D006260 ORTHO05D007860 7.5e-79 297.4 177 86.4
COL.COLO4_14462 Corchorus olitorius HOM05D006260 ORTHO05D007860 1.5e-74 283.1 177 83.6
ClCG06G013810 Citrullus lanatus HOM05D006260 ORTHO05D007860 5.6e-74 281.2 177 81.4
MELO3C017413.2 Cucumis melo HOM05D006260 ORTHO05D007860 8.0e-73 277.3 177 80.8
CsaV3_1G032030 Cucumis sativus L. HOM05D006260 ORTHO05D007860 1.4e-72 276.6 177 80.8
Potri.006G072600 Populus trichocarpa HOM05D006260 ORTHO05D007860 5.2e-72 274.6 177 79.7
AT2G19340 Arabidopsis thaliana HOM05D006260 ORTHO05D007860 2.0e-71 272.7 163 86.5
RcHm_v2.0_Chr4g0398801 Rosa chinensis HOM05D006260 ORTHO05D007860 2.0e-71 272.7 177 78.5
Ciclev10009690m.g Citrus clementina HOM05D006260 ORTHO05D007860 2.6e-71 272.3 178 80.9
TWI63G0540 Tripterygium wilfordii HOM05D006260 ORTHO05D007860 3.4e-71 271.9 177 81.4
Thecc.09G192000 Theobroma cacao HOM05D006260 ORTHO05D007860 4.4e-71 271.6 177 79.7
Lalb_Chr23g0276701 Lupinus albus HOM05D006260 ORTHO05D007860 5.8e-71 271.2 177 77.4
Sed0022699 Sechium edule HOM05D006260 ORTHO05D007860 5.8e-71 271.2 178 76.4
Atru.chr7.896 Acer truncatum HOM05D006260 ORTHO05D007860 7.5e-71 270.8 178 80.3
Glyma.09G061600 Glycine max HOM05D006260 ORTHO05D007860 7.5e-71 270.8 161 84.5
Potri.018G139600 Populus trichocarpa HOM05D006260 ORTHO05D007860 1.7e-70 269.6 177 75.7
TWI38G0675 Tripterygium wilfordii HOM05D006260 ORTHO05D007860 3.7e-70 268.5 177 79.1
FvH4_4g06900 Fragaria vesca HOM05D006260 ORTHO05D007860 4.9e-70 268.1 175 79.4
Gohir.A05G409000 Gossypium hirsutum HOM05D006260 ORTHO05D007860 4.9e-70 268.1 177 77.4
SGA_v2.0_scaffold31G12783 Striga asiatica HOM05D006260 ORTHO05D007860 6.4e-70 267.7 166 81.3
Glyma.15G167900 Glycine max HOM05D006260 ORTHO05D007860 8.3e-70 267.3 177 76.8
Gohir.D04G006400 Gossypium hirsutum HOM05D006260 ORTHO05D007860 3.2e-69 265.4 177 75.7
Gorai.012G007800 Gossypium raimondii HOM05D006260 ORTHO05D007860 3.2e-69 265.4 177 75.7
Medtr2g038390 Medicago truncatula HOM05D006260 ORTHO05D007860 7.0e-69 264.2 175 78.3
Gohir.D04G006600 Gossypium hirsutum HOM05D006260 ORTHO05D007860 1.6e-68 263.1 177 75.1
Gorai.012G008000 Gossypium raimondii HOM05D006260 ORTHO05D007860 1.6e-68 263.1 177 75.1
MD16G1245000 Malus domestica HOM05D006260 ORTHO05D007860 2.0e-68 262.7 177 75.1
Psat1g142480 Pisum sativum HOM05D006260 ORTHO05D007860 2.0e-68 262.7 176 77.3
Prupe.1G072000 Prunus persica HOM05D006260 ORTHO05D007860 2.0e-68 262.7 179 76.5
Cc05_g06400 Coffea canephora HOM05D006260 ORTHO05D007860 2.7e-68 262.3 177 78.5
Gohir.A05G408800 Gossypium hirsutum HOM05D006260 ORTHO05D007860 2.7e-68 262.3 177 75.7
Eucgr.C00083 Eucalyptus grandis HOM05D006260 ORTHO05D007860 3.5e-68 261.9 175 76.0
CANSAT21G0469 Cannabis sativa HOM05D006260 ORTHO05D007860 6.0e-68 261.2 175 75.4
Phvul.009G234400 Phaseolus vulgaris HOM05D006260 ORTHO05D007860 6.0e-68 261.2 177 75.7
MBI14_g10729_MAGBIO Magnolia biondii HOM05D006260 ORTHO05D007860 7.8e-68 260.8 177 76.8
Lj6g0019941 Lotus japonicus HOM05D006260 ORTHO05D007860 1.0e-67 260.4 178 75.3
MD16G1244900 Malus domestica HOM05D006260 ORTHO05D007860 1.0e-67 260.4 179 76.0
CANSAT11G1813 Cannabis sativa HOM05D006260 ORTHO05D007860 1.3e-67 260.0 175 74.9
FAN22G1136 Fragaria x ananassa HOM05D006260 ORTHO05D007860 1.7e-67 259.6 174 78.2
FAN12G1915 Fragaria x ananassa HOM05D006260 ORTHO05D007860 2.3e-67 259.2 174 78.2
FAN07G2370 Fragaria x ananassa HOM05D006260 ORTHO05D007860 3.0e-67 258.8 174 78.2
TPR.G2550 Trifolium pratense HOM05D006260 ORTHO05D007860 3.0e-67 258.8 178 75.3
MSTRG.19359 Avicennia marina HOM05D006260 ORTHO05D007860 3.9e-67 258.5 171 78.9
Manes.14G161300 Manihot esculenta HOM05D006260 ORTHO05D007860 6.6e-67 257.7 154 83.8
Haze_22050 Corylus avellana HOM05D006260 ORTHO05D007860 8.6e-67 257.3 175 75.4
PGR018G0003 Punica granatum HOM05D006260 ORTHO05D007860 8.6e-67 257.3 180 72.8
PGR142G0891 Punica granatum HOM05D006260 ORTHO05D007860 8.6e-67 257.3 180 72.8
PGR142G1877 Punica granatum HOM05D006260 ORTHO05D007860 8.6e-67 257.3 180 72.8
SalBow3G0163 Salvia bowleyana HOM05D006260 ORTHO05D007860 8.6e-67 257.3 168 79.8
unitig_8.g4053 Utricularia gibba HOM05D006260 ORTHO05D007860 1.5e-66 256.5 168 76.2
GSVIVG01029271001 Vitis vinifera HOM05D006260 ORTHO05D007860 1.5e-66 256.5 177 75.7
PGSC0003DMG400015598 Solanum tuberosum HOM05D006260 ORTHO05D007860 3.3e-66 255.4 179 74.3
CAN.G1341.6 Capsicum annuum HOM05D006260 ORTHO05D007860 4.3e-66 255.0 177 76.3
CiPaw.08G031300 Carya illinoinensis HOM05D006260 ORTHO05D007860 5.6e-66 254.6 177 72.3
Nitab4.5_0000257g0210 Nicotiana tabacum HOM05D006260 ORTHO05D007860 5.6e-66 254.6 179 73.2
Oeu043898.1 Olea europaea HOM05D006260 ORTHO05D007860 5.6e-66 254.6 179 72.6
Solyc05g006080.1 Solanum lycopersicum HOM05D006260 ORTHO05D007860 5.6e-66 254.6 179 74.9
Sopen05g002100 Solanum pennellii HOM05D006260 ORTHO05D007860 5.6e-66 254.6 179 74.9
vmacro20799 Vaccinium macrocarpon HOM05D006260 ORTHO05D007860 7.3e-66 254.2 177 72.3
Lj5A659T18 Lonicera japonica HOM05D006260 ORTHO05D007860 1.2e-65 253.4 177 74.6
ATR0580G108 Amborella trichopoda HOM05D006260 ORTHO05D007860 3.6e-65 251.9 177 73.4
Migut.J00776 Erythranthe guttata HOM05D006260 ORTHO05D007860 6.2e-65 251.1 169 74.6
Rhsim01G0114100 Rhododendron simsii HOM05D006260 ORTHO05D007860 6.2e-65 251.1 179 72.1
Ah.14g085330 Amaranthus hybridus HOM05D006260 ORTHO05D007860 8.0e-65 250.8 172 77.9
Ca_02129_v3 Cicer arietinum L. HOM05D006260 ORTHO05D007860 8.0e-65 250.8 151 82.8
Oeu012389.1 Olea europaea HOM05D006260 ORTHO05D007860 8.0e-65 250.8 180 72.2
Nitab4.5_0009368g0010 Nicotiana tabacum HOM05D006260 ORTHO05D007860 1.1e-64 250.4 179 71.5
SGA_v2.0_scaffold112G31634 Striga asiatica HOM05D006260 ORTHO05D007860 1.1e-64 250.4 151 82.8
Ah.09g228540 Amaranthus hybridus HOM05D006260 ORTHO05D007860 1.4e-64 250.0 174 74.1
CSS0028862 Camellia sinensis var. sinensis HOM05D006260 ORTHO05D007860 1.8e-64 249.6 178 71.9
Lsat_1_v5_gn_7_55181 Lactuca sativa HOM05D006260 ORTHO05D007860 5.2e-64 248.1 153 80.4
Lj5A660T21 Lonicera japonica HOM05D006260 ORTHO05D007860 1.2e-63 246.9 177 72.9
CDE07G0891 Ceratophyllum demersum HOM05D006260 ORTHO05D007860 1.5e-63 246.5 152 80.3
Lj5A667T13 Lonicera japonica HOM05D006260 ORTHO05D007860 2.0e-63 246.1 177 74.0
Hma1.2p1_0478F.1_g161140 Hydrangea macrophylla HOM05D006260 ORTHO05D007860 5.8e-63 244.6 177 71.8
SHI03067 Sapria himalayana HOM05D006260 ORTHO05D007860 2.2e-62 242.7 158 77.8
DCAR_018008 Daucus carota HOM05D006260 ORTHO05D007860 3.7e-62 241.9 153 79.7
HanXRQChr09g0245351 Helianthus annuus HOM05D006260 ORTHO05D007860 3.7e-62 241.9 153 79.1
Aqoxy7G02900 Aquilegia oxysepala HOM05D006260 ORTHO05D007860 2.4e-61 239.2 176 71.0
AUR62027428 Chenopodium quinoa HOM05D006260 ORTHO05D007860 3.2e-61 238.8 175 72.6
Manes.06G017400 Manihot esculenta HOM05D006260 ORTHO05D007860 4.1e-61 238.4 142 83.1
Peaxi162Scf00421g00071 Petunia axillaris HOM05D006260 ORTHO05D007860 5.4e-61 238.0 164 73.8
Zm00001eb169590 Zea mays HOM05D006260 ORTHO05D007860 1.2e-60 236.9 176 68.2
TAR383G0359 Trochodendron aralioides HOM05D006260 ORTHO05D007860 1.0e-59 233.8 176 68.8
Zm00001eb112720 Zea mays HOM05D006260 ORTHO05D007860 1.3e-59 233.4 176 68.2
HPP92_027392 Vanilla planifolia HOM05D006260 ORTHO05D007860 1.7e-59 233.0 174 68.4
Sc18g0003820 Simmondsia chinensis HOM05D006260 ORTHO05D007860 2.3e-59 232.6 172 69.2
QL02p064675 Quercus lobata HOM05D006260 ORTHO05D007860 3.6e-57 225.3 167 69.5
FAN17G2269 Fragaria x ananassa HOM05D006260 ORTHO05D007860 4.7e-57 224.9 156 75.0
CiPaw.07G199300 Carya illinoinensis HOM05D006260 ORTHO05D007860 6.2e-57 224.6 156 72.4
Sed0019929 Sechium edule HOM05D006260 ORTHO05D007860 1.1e-56 223.8 145 77.9
CDE06G1002 Ceratophyllum demersum HOM05D006260 ORTHO05D007860 1.7e-54 216.5 137 76.6
Mapoly0039s0076 Marchantia polymorpha HOM05D006260 ORTHO05D007860 1.7e-54 216.5 152 72.4
PSO170G1526 Papaver somniferum HOM05D006260 ORTHO05D007860 8.6e-51 204.1 129 79.8
SEGI_37789 Sequoiadendron giganteum HOM05D006260 ORTHO05D007860 4.3e-50 201.8 155 66.5
Sabra06G0054000 Salix brachista HOM05D006260 ORTHO05D007860 1.2e-49 200.3 118 85.6
Cpa.g.sc115.60 Carica papaya HOM05D006260 ORTHO05D007860 3.6e-49 198.7 117 85.5
SMO329G0049 Selaginella moellendorffii HOM05D006260 ORTHO05D007860 4.7e-49 198.4 154 65.6
CBR_g37526 Chara braunii HOM05D006260 ORTHO05D007860 1.1e-48 197.2 153 62.1
TAR626G1894 Trochodendron aralioides HOM05D006260 ORTHO05D007860 1.2e-47 193.7 129 76.0
BcaNung00497 Brassica carinata HOM05D006260 ORTHO05D007860 5.8e-47 191.4 129 80.6
AagrBONN_evm.TU.Sc2ySwM_362.1716 Anthoceros agrestis HOM05D006260 ORTHO05D007860 2.9e-46 189.1 152 62.5
ECA240G0773 Erigeron canadensis HOM05D006260 ORTHO05D007860 2.9e-46 189.1 120 81.7
Sabra18G0114100 Salix brachista HOM05D006260 ORTHO05D007860 4.6e-44 181.8 107 86.0
AUR62031268 Chenopodium quinoa HOM05D006260 ORTHO05D007860 5.1e-43 178.3 106 83.0
Pp3c5_8110 Physcomitrium patens HOM05D006260 ORTHO05D007860 6.6e-43 177.9 131 65.6
EL10Ac8g19294 Beta vulgaris HOM05D006260 ORTHO05D007860 1.5e-42 176.8 106 82.1
Lj5C609T1 Lonicera japonica HOM05D006260 ORTHO05D007860 2.6e-31 139.4 91 74.7
Cre12.g528150 Chlamydomonas reinhardtii HOM05D006260 ORTHO05D007860 3.5e-28 129.0 123 48.0
TWI39G0723 Tripterygium wilfordii HOM05D006260 ORTHO05D007860 2.4e-16 89.7 106 53.8
MD13G1241300 Malus domestica HOM05D006260 ORTHO05D249159 7.4e-10 68.2 118 43.2


User provided reference genes

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