Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR237190 Cardamine hirsuta HOM05D004751 ORTHO05D005819 0.0e+00 2351.2 1209 100.0
AL7G23020 Arabidopsis lyrata HOM05D004751 ORTHO05D005819 0.0e+00 2109.7 1177 92.3
AT4G29380 Arabidopsis thaliana HOM05D004751 ORTHO05D005819 0.0e+00 2094.7 1177 91.8
Carub.0007s1117 Capsella rubella HOM05D004751 ORTHO05D005819 0.0e+00 2085.5 1177 91.5
Thhalv10024212m.g Eutrema salsugineum HOM05D004751 ORTHO05D005819 0.0e+00 2078.9 1177 91.2
Sp7g27250 Schrenkiella parvula HOM05D004751 ORTHO05D005819 0.0e+00 2060.0 1177 89.9
BolC1t00970H Brassica oleracea HOM05D004751 ORTHO05D005819 0.0e+00 2003.4 1174 88.8
C01p10120 Brassica napus HOM05D004751 ORTHO05D005819 0.0e+00 2002.6 1174 88.8
A01p08650 Brassica napus HOM05D004751 ORTHO05D005819 0.0e+00 1998.4 1174 88.8
BraA01t00815Z Brassica rapa HOM05D004751 ORTHO05D005819 0.0e+00 1997.2 1174 88.7
Aa31LG2G21070 Aethionema arabicum HOM05D004751 ORTHO05D005819 0.0e+00 1960.3 1231 83.3
THA.LOC104814595 Tarenaya hassleriana HOM05D004751 ORTHO05D005819 0.0e+00 1824.3 1228 77.9
BcaC09g51723 Brassica carinata HOM05D004751 ORTHO05D005819 0.0e+00 1807.7 1174 82.5
Duzib150G1241 Durio zibethinus HOM05D004751 ORTHO05D005819 0.0e+00 1597.8 1236 68.2
Thecc.09G099100 Theobroma cacao HOM05D004751 ORTHO05D005819 0.0e+00 1595.5 1245 67.6
Manes.16G108000 Manihot esculenta HOM05D004751 ORTHO05D005819 0.0e+00 1592.8 1232 68.8
Prupe.2G065200 Prunus persica HOM05D004751 ORTHO05D005819 0.0e+00 1585.5 1205 68.3
QL02p040907 Quercus lobata HOM05D004751 ORTHO05D005819 0.0e+00 1578.1 1235 67.8
RcHm_v2.0_Chr1g0331571 Rosa chinensis HOM05D004751 ORTHO05D005819 0.0e+00 1578.1 1241 67.6
Atru.chr7.1477 Acer truncatum HOM05D004751 ORTHO05D005819 0.0e+00 1572.4 1236 67.4
FvH4_7g05110 Fragaria vesca HOM05D004751 ORTHO05D005819 0.0e+00 1565.8 1237 66.9
Gohir.A05G026300 Gossypium hirsutum HOM05D004751 ORTHO05D005819 0.0e+00 1565.8 1244 66.9
Gorai.009G028000 Gossypium raimondii HOM05D004751 ORTHO05D005819 0.0e+00 1564.3 1244 67.0
CANSAT56G3494 Cannabis sativa HOM05D004751 ORTHO05D005819 0.0e+00 1562.4 1239 66.9
Gohir.D05G027800 Gossypium hirsutum HOM05D004751 ORTHO05D005819 0.0e+00 1562.4 1244 67.0
FAN01G0060 Fragaria x ananassa HOM05D004751 ORTHO05D005819 0.0e+00 1561.6 1234 66.8
FAN06G4551 Fragaria x ananassa HOM05D004751 ORTHO05D005819 0.0e+00 1558.5 1241 66.7
TWI34G0109 Tripterygium wilfordii HOM05D004751 ORTHO05D005819 0.0e+00 1557.0 1229 66.7
Ciclev10007242m.g Citrus clementina HOM05D004751 ORTHO05D005819 0.0e+00 1554.3 1236 67.4
Potri.006G153100 Populus trichocarpa HOM05D004751 ORTHO05D005819 0.0e+00 1551.2 1235 67.4
Sabra06G0121300 Salix brachista HOM05D004751 ORTHO05D005819 0.0e+00 1551.2 1234 67.7
Haze_25834 Corylus avellana HOM05D004751 ORTHO05D005819 0.0e+00 1548.9 1236 66.4
MD02G1262100 Malus domestica HOM05D004751 ORTHO05D005819 0.0e+00 1544.6 1234 66.7
Dinv42256 Davidia involucrata HOM05D004751 ORTHO05D005819 0.0e+00 1535.0 1236 65.5
MD07G1058300 Malus domestica HOM05D004751 ORTHO05D005819 0.0e+00 1530.4 1241 65.8
CsaV3_1G039890 Cucumis sativus L. HOM05D004751 ORTHO05D005819 0.0e+00 1504.2 1225 65.4
TWI32G0016 Tripterygium wilfordii HOM05D004751 ORTHO05D005819 0.0e+00 1503.8 1228 65.2
Eucgr.C03719 Eucalyptus grandis HOM05D004751 ORTHO05D005819 0.0e+00 1502.3 1224 66.1
ClCG03G016070 Citrullus lanatus HOM05D004751 ORTHO05D005819 0.0e+00 1501.1 1231 65.2
MELO3C015420.2 Cucumis melo HOM05D004751 ORTHO05D005819 0.0e+00 1498.8 1225 65.3
Actinidia17515 Actinidia chinensis HOM05D004751 ORTHO05D005819 0.0e+00 1494.6 1232 64.3
Rhsim05G0038900 Rhododendron simsii HOM05D004751 ORTHO05D005819 0.0e+00 1489.6 1234 64.5
Hma1.2p1_0012F.1_g007400 Hydrangea macrophylla HOM05D004751 ORTHO05D005819 0.0e+00 1488.4 1195 66.7
Glyma.01G006600 Glycine max HOM05D004751 ORTHO05D005819 0.0e+00 1487.6 1222 65.4
CSS0000434 Camellia sinensis var. sinensis HOM05D004751 ORTHO05D005819 0.0e+00 1486.9 1236 64.2
CSS0026223 Camellia sinensis var. sinensis HOM05D004751 ORTHO05D005819 0.0e+00 1486.5 1236 64.1
Medtr6g088835 Medicago truncatula HOM05D004751 ORTHO05D005819 0.0e+00 1483.0 1226 65.2
Sed0000923 Sechium edule HOM05D004751 ORTHO05D005819 0.0e+00 1480.3 1226 64.5
Glyma.07G125200 Glycine max HOM05D004751 ORTHO05D005819 0.0e+00 1476.1 1222 64.7
arahy.Tifrunner.gnm1.ann1.11NKIJ Arachis hypogaea HOM05D004751 ORTHO05D005819 0.0e+00 1474.9 1219 65.5
vmacro10847 Vaccinium macrocarpon HOM05D004751 ORTHO05D005819 0.0e+00 1473.8 1237 64.0
TPR.G31000 Trifolium pratense HOM05D004751 ORTHO05D005819 0.0e+00 1473.4 1228 64.8
VMungo0464G0426 Vigna mungo HOM05D004751 ORTHO05D005819 0.0e+00 1472.6 1222 65.0
PGR102G2506 Punica granatum HOM05D004751 ORTHO05D005819 0.0e+00 1470.7 1185 67.1
DCAR_028653 Daucus carota HOM05D004751 ORTHO05D005819 0.0e+00 1470.3 1240 64.0
Lj2g0020264 Lotus japonicus HOM05D004751 ORTHO05D005819 0.0e+00 1469.5 1226 65.7
PGSC0003DMG400023589 Solanum tuberosum HOM05D004751 ORTHO05D005819 0.0e+00 1465.7 1240 64.1
Ca_25582_v3 Cicer arietinum L. HOM05D004751 ORTHO05D005819 0.0e+00 1463.4 1226 65.0
Psat1g048040 Pisum sativum HOM05D004751 ORTHO05D005819 0.0e+00 1462.2 1227 64.5
Sopen04g006260 Solanum pennellii HOM05D004751 ORTHO05D005819 0.0e+00 1459.9 1235 64.2
Lalb_Chr14g0371941 Lupinus albus HOM05D004751 ORTHO05D005819 0.0e+00 1459.1 1227 64.4
Phvul.004G175100 Phaseolus vulgaris HOM05D004751 ORTHO05D005819 0.0e+00 1451.8 1184 65.9
EL10Ac8g18369 Beta vulgaris HOM05D004751 ORTHO05D005819 0.0e+00 1449.1 1237 63.5
TAR626G1784 Trochodendron aralioides HOM05D004751 ORTHO05D005819 0.0e+00 1446.0 1245 64.0
TAR639G0003 Trochodendron aralioides HOM05D004751 ORTHO05D005819 0.0e+00 1446.0 1245 64.0
CAN.G787.12 Capsicum annuum HOM05D004751 ORTHO05D005819 0.0e+00 1444.5 1235 64.0
COL.COLO4_34728 Corchorus olitorius HOM05D004751 ORTHO05D005819 0.0e+00 1443.3 1244 63.7
Cfa003165 Carpinus fangiana HOM05D004751 ORTHO05D005819 0.0e+00 1438.7 1182 65.3
Cc06_g10590 Coffea canephora HOM05D004751 ORTHO05D005819 0.0e+00 1432.2 1233 62.4
AUR62010880 Chenopodium quinoa HOM05D004751 ORTHO05D005819 0.0e+00 1431.8 1240 62.7
Hund26286 Selenicereus undatus HOM05D004751 ORTHO05D005819 0.0e+00 1429.8 1233 62.3
Peaxi162Scf01157g00011 Petunia axillaris HOM05D004751 ORTHO05D005819 0.0e+00 1426.0 1226 63.1
SGA_v2.0_scaffold19G08722 Striga asiatica HOM05D004751 ORTHO05D005819 0.0e+00 1411.0 1228 61.2
Migut.K00548 Erythranthe guttata HOM05D004751 ORTHO05D005819 0.0e+00 1409.4 1234 60.9
Sc08g0008060 Simmondsia chinensis HOM05D004751 ORTHO05D005819 0.0e+00 1409.4 1212 63.4
SalBow1G2004 Salvia bowleyana HOM05D004751 ORTHO05D005819 0.0e+00 1407.9 1232 60.6
TAR383G0360 Trochodendron aralioides HOM05D004751 ORTHO05D005819 0.0e+00 1407.5 1248 61.8
arahy.Tifrunner.gnm1.ann1.YRLX64 Arachis hypogaea HOM05D004751 ORTHO05D005819 0.0e+00 1406.3 1181 62.1
Ah.09g230480 Amaranthus hybridus HOM05D004751 ORTHO05D005819 0.0e+00 1397.9 1236 62.4
arahy.Tifrunner.gnm1.ann1.9BR2YY Arachis hypogaea HOM05D004751 ORTHO05D005819 0.0e+00 1395.9 1181 61.8
Solyc04g012170.4 Solanum lycopersicum HOM05D004751 ORTHO05D005819 0.0e+00 1395.9 1235 61.9
Lj7C667T4 Lonicera japonica HOM05D004751 ORTHO05D005819 0.0e+00 1388.2 1251 61.5
ECA240G2374 Erigeron canadensis HOM05D004751 ORTHO05D005819 0.0e+00 1386.3 1182 64.1
Lsat_1_v5_gn_7_39580 Lactuca sativa HOM05D004751 ORTHO05D005819 0.0e+00 1382.9 1193 62.2
PSO210G2464 Papaver somniferum HOM05D004751 ORTHO05D005819 0.0e+00 1381.7 1230 61.7
MSTRG.26388 Avicennia marina HOM05D004751 ORTHO05D005819 0.0e+00 1378.2 1233 60.5
PSO210G3406 Papaver somniferum HOM05D004751 ORTHO05D005819 0.0e+00 1374.8 1230 61.5
Oeu021455.1 Olea europaea HOM05D004751 ORTHO05D005819 0.0e+00 1372.1 1182 62.8
GSVIVG01015287001 Vitis vinifera HOM05D004751 ORTHO05D005819 0.0e+00 1367.4 1177 64.1
MBI15_g07764_MAGBIO Magnolia biondii HOM05D004751 ORTHO05D005819 0.0e+00 1362.4 1246 60.9
Aqoxy7G03607 Aquilegia oxysepala HOM05D004751 ORTHO05D005819 0.0e+00 1350.9 1249 60.5
AUR62021393 Chenopodium quinoa HOM05D004751 ORTHO05D005819 0.0e+00 1345.1 1244 60.0
HanXRQChr03g0061061 Helianthus annuus HOM05D004751 ORTHO05D005819 0.0e+00 1326.2 1185 61.4
Oeu018580.2 Olea europaea HOM05D004751 ORTHO05D005819 0.0e+00 1256.5 1189 58.9
unitig_8.g4485 Utricularia gibba HOM05D004751 ORTHO05D005819 0.0e+00 1255.7 1213 56.8
arahy.Tifrunner.gnm1.ann1.U02M06 Arachis hypogaea HOM05D004751 ORTHO05D005819 0.0e+00 1243.0 1095 62.8
ATR0730G043 Amborella trichopoda HOM05D004751 ORTHO05D005819 3.6e-310 1068.5 1201 52.5
Zm00001eb257890 Zea mays HOM05D004751 ORTHO05D005819 1.9e-298 1029.6 1234 49.6
Zm00001eb192340 Zea mays HOM05D004751 ORTHO05D005819 6.9e-293 1011.1 1235 48.9
Cpa.g.sc78.25 Carica papaya HOM05D004751 ORTHO05D005819 1.3e-291 1006.9 1183 51.6
Hund09091 Selenicereus undatus HOM05D004751 ORTHO05D005819 6.5e-275 951.4 1260 47.0
SHI02649 Sapria himalayana HOM05D004751 ORTHO05D005819 1.9e-274 949.9 1029 54.0
Nitab4.5_0004673g0040 Nicotiana tabacum HOM05D004751 ORTHO05D005819 2.9e-267 926.0 778 65.6
Mapoly0002s0158 Marchantia polymorpha HOM05D004751 ORTHO05D005819 4.4e-239 832.4 1292 42.4
SEGI_30648 Sequoiadendron giganteum HOM05D004751 ORTHO05D005819 5.8e-239 832.0 1255 44.5
Pp3c15_10000 Physcomitrium patens HOM05D004751 ORTHO05D005819 9.2e-237 824.7 1456 39.5
Pp3c9_3860 Physcomitrium patens HOM05D004751 ORTHO05D005819 1.6e-236 823.9 1452 39.3
Nitab4.5_0001242g0100 Nicotiana tabacum HOM05D004751 ORTHO05D005819 5.4e-229 798.9 1233 40.7
SMO347G0104 Selaginella moellendorffii HOM05D004751 ORTHO05D005819 9.2e-229 798.1 1202 43.3
AagrBONN_evm.TU.Sc2ySwM_228.4976 Anthoceros agrestis HOM05D004751 ORTHO05D005819 2.9e-214 750.0 1527 37.3
Ca_25584_v3 Cicer arietinum L. HOM05D004751 ORTHO05D005819 3.4e-207 726.5 563 65.4
CDE04G1922 Ceratophyllum demersum HOM05D004751 ORTHO05D005819 4.0e-200 703.0 712 55.5
Dinv36676 Davidia involucrata HOM05D004751 ORTHO05D005819 8.0e-140 502.7 394 71.8
CDE04G0916 Ceratophyllum demersum HOM05D004751 ORTHO05D005819 1.9e-136 491.5 398 62.6
RcHm_v2.0_Chr1g0332501 Rosa chinensis HOM05D004751 ORTHO05D005819 1.3e-126 458.8 660 43.6
Dinv36677 Davidia involucrata HOM05D004751 ORTHO05D005819 1.7e-126 458.4 367 63.8
CBR_g47981 Chara braunii HOM05D004751 ORTHO05D005819 3.8e-113 414.1 2080 24.2
A01p08660 Brassica napus HOM05D004751 ORTHO05D000206 2.6e-98 364.8 223 81.2
Os02g0796700 Oryza sativa ssp. japonica HOM05D004751 ORTHO05D005819 7.6e-98 363.2 325 55.1
PRCOL_00004168 Prasinoderma coloniale HOM05D004751 ORTHO05D005819 4.0e-91 340.9 1447 26.5
FAN03G2869 Fragaria x ananassa HOM05D004751 ORTHO05D005819 2.1e-87 328.6 176 86.4
Hma1.2p1_0386F.1_g141720 Hydrangea macrophylla HOM05D004751 ORTHO05D005819 8.2e-84 316.6 240 68.8
Dinv36675 Davidia involucrata HOM05D004751 ORTHO05D005819 1.2e-79 302.8 232 63.4
Lsat_1_v5_gn_0_39700 Lactuca sativa HOM05D004751 ORTHO05D005819 1.1e-67 263.1 188 65.4
Ca_25581_v3 Cicer arietinum L. HOM05D004751 ORTHO05D005819 2.8e-60 238.4 418 37.6
Cre06.g290500 Chlamydomonas reinhardtii HOM05D004751 ORTHO05D005819 1.8e-59 235.7 1025 25.4
RcHm_v2.0_Chr1g0332481 Rosa chinensis HOM05D004751 ORTHO05D005819 1.7e-52 212.6 122 78.7
Nitab4.5_0015727g0010 Nicotiana tabacum HOM05D004751 ORTHO05D005819 2.2e-52 212.2 133 69.9
C07p57020 Brassica napus HOM05D004751 ORTHO05D005819 2.2e-49 202.2 191 60.2
BcaB08g34921 Brassica carinata HOM05D004751 ORTHO05D005819 3.6e-39 168.3 81 93.8
MCO11G423 Micromonas commoda HOM05D004751 ORTHO05D005819 3.1e-35 155.2 178 43.8
RcHm_v2.0_Chr1g0332491 Rosa chinensis HOM05D004751 ORTHO05D005819 3.7e-28 131.7 110 60.9
A06p04880 Brassica napus HOM05D004751 ORTHO05D005819 1.9e-24 119.4 54 96.3
BraA06t23692Z Brassica rapa HOM05D004751 ORTHO05D005819 1.9e-24 119.4 54 96.3
CiPaw.03G223200 Carya illinoinensis HOM05D004751 ORTHO05D005819 4.3e-24 118.2 54 94.4
A09p40550 Brassica napus HOM05D004751 ORTHO05D005819 7.3e-24 117.5 54 94.4
BraA09t39552Z Brassica rapa HOM05D004751 ORTHO05D005819 7.3e-24 117.5 54 94.4
SHI02646 Sapria himalayana HOM05D004751 ORTHO05D005819 1.2e-23 116.7 57 86.0
SEGI_14388 Sequoiadendron giganteum HOM05D004751 ORTHO05D005819 3.4e-21 108.6 54 85.2
CDE06G0341 Ceratophyllum demersum HOM05D004751 ORTHO05D008828 6.4e-20 104.4 53 86.8
ATR0661G544 Amborella trichopoda HOM05D004751 ORTHO05D005819 7.0e-19 100.9 71 60.6
SHI02648 Sapria himalayana HOM05D004751 ORTHO05D005819 1.2e-18 100.1 61 73.8
CiPaw.03G223300 Carya illinoinensis HOM05D004751 ORTHO05D005819 1.0e-09 70.5 39 79.5
Glyma.07G100800 Glycine max HOM05D002288 ORTHO05D002894 2.8e-07 62.4 201 25.4
SHI02647 Sapria himalayana HOM05D004751 ORTHO05D005819 3.6e-07 62.0 35 85.7
PSO832G2682 Papaver somniferum HOM05D004751 ORTHO05D005819 1.4e-06 60.1 35 68.6


User provided reference genes

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