Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR235060 Cardamine hirsuta HOM05D000461 ORTHO05D009042 5.5e-133 477.6 239 100.0
Sp7g25320 Schrenkiella parvula HOM05D000461 ORTHO05D009042 8.2e-113 410.6 239 84.9
AT4G27390 Arabidopsis thaliana HOM05D000461 ORTHO05D009042 3.8e-110 401.7 239 84.1
Thhalv10026109m.g Eutrema salsugineum HOM05D000461 ORTHO05D009042 4.2e-109 398.3 243 83.1
C07p55420 Brassica napus HOM05D000461 ORTHO05D009042 1.0e-107 393.7 244 83.2
BcaC06g32696 Brassica carinata HOM05D000461 ORTHO05D009042 1.8e-107 392.9 244 82.8
Carub.0007s1348 Capsella rubella HOM05D000461 ORTHO05D009042 1.8e-107 392.9 240 83.3
BolC7t46022H Brassica oleracea HOM05D000461 ORTHO05D009042 6.7e-107 391.0 244 82.8
A03p57230 Brassica napus HOM05D000461 ORTHO05D009042 1.1e-106 390.2 242 82.6
BraA03t14789Z Brassica rapa HOM05D000461 ORTHO05D009042 1.1e-106 390.2 242 82.6
AL7G25410 Arabidopsis lyrata HOM05D000461 ORTHO05D009042 3.3e-106 388.7 241 83.4
Aa31LG5G10130 Aethionema arabicum HOM05D000461 ORTHO05D009042 2.2e-94 349.4 248 72.6
THA.LOC104799911 Tarenaya hassleriana HOM05D000461 ORTHO05D009042 6.3e-89 331.3 245 68.6
Cpa.g.sc80.106 Carica papaya HOM05D000461 ORTHO05D009042 7.5e-66 254.6 248 54.8
Duzib213G0849 Durio zibethinus HOM05D000461 ORTHO05D009042 3.2e-64 249.2 256 54.7
Eucgr.F03352 Eucalyptus grandis HOM05D000461 ORTHO05D009042 2.0e-63 246.5 188 63.8
Dinv08335 Davidia involucrata HOM05D000461 ORTHO05D009042 4.6e-63 245.4 243 53.1
COL.COLO4_09469 Corchorus olitorius HOM05D000461 ORTHO05D009768 1.7e-62 243.4 191 62.8
Hma1.2p1_1003F.1_g246730 Hydrangea macrophylla HOM05D000461 ORTHO05D009042 1.7e-62 243.4 196 62.8
CSS0025788 Camellia sinensis var. sinensis HOM05D000461 ORTHO05D009042 1.1e-61 240.7 186 62.9
QL08p018706 Quercus lobata HOM05D000461 ORTHO05D009042 1.5e-61 240.4 250 52.8
Thecc.07G072900 Theobroma cacao HOM05D000461 ORTHO05D009042 1.5e-61 240.4 194 62.9
CiPaw.11G175500 Carya illinoinensis HOM05D000461 ORTHO05D009042 5.6e-61 238.4 202 60.4
QL93p2023_0091 Quercus lobata HOM05D000461 ORTHO05D009042 1.6e-60 236.9 250 52.0
Solyc07g063530.3 Solanum lycopersicum HOM05D000461 ORTHO05D009042 3.6e-60 235.7 259 51.4
Ciclev10009303m.g Citrus clementina HOM05D000461 ORTHO05D009042 4.7e-60 235.3 194 60.3
PGR031G2091 Punica granatum HOM05D000461 ORTHO05D009042 8.1e-60 234.6 188 63.8
Cfa020516 Carpinus fangiana HOM05D000461 ORTHO05D009768 1.8e-59 233.4 179 63.1
Dinv22369 Davidia involucrata HOM05D000461 ORTHO05D009042 1.8e-59 233.4 186 61.8
Nn1g03924 Nelumbo nucifera HOM05D000461 ORTHO05D009042 5.2e-59 231.9 254 52.8
Rhsim04G0018200 Rhododendron simsii HOM05D000461 ORTHO05D009042 5.2e-59 231.9 219 55.3
TWI39G0508 Tripterygium wilfordii HOM05D000461 ORTHO05D009042 9.9e-58 227.6 180 60.6
Sopen07g031710 Solanum pennellii HOM05D000461 ORTHO05D009042 1.3e-57 227.3 170 67.1
RcHm_v2.0_Chr5g0035191 Rosa chinensis HOM05D000461 ORTHO05D009042 1.7e-57 226.9 181 60.8
ClCG10G006570 Citrullus lanatus HOM05D000461 ORTHO05D009042 2.2e-57 226.5 251 53.4
Glyma.13G281300 Glycine max HOM05D000461 ORTHO05D009042 3.7e-57 225.7 183 60.7
MD11G1238100 Malus domestica HOM05D000461 ORTHO05D009042 8.3e-57 224.6 258 50.0
Psat5g246400 Pisum sativum HOM05D000461 ORTHO05D009042 1.1e-56 224.2 193 59.1
Prupe.4G189000 Prunus persica HOM05D000461 ORTHO05D009042 1.1e-56 224.2 257 50.2
FAN11G0265 Fragaria x ananassa HOM05D000461 ORTHO05D009042 1.9e-56 223.4 189 58.2
Atru.chr2.2831 Acer truncatum HOM05D000461 ORTHO05D009042 4.1e-56 222.2 185 60.5
FAN16G2536 Fragaria x ananassa HOM05D000461 ORTHO05D009042 4.1e-56 222.2 187 57.8
FAN21G1502 Fragaria x ananassa HOM05D000461 ORTHO05D009042 4.1e-56 222.2 182 59.3
CsaV3_3G006020 Cucumis sativus L. HOM05D000461 ORTHO05D009042 9.2e-56 221.1 178 62.4
Manes.03G116000 Manihot esculenta HOM05D000461 ORTHO05D009042 1.2e-55 220.7 216 53.7
Nitab4.5_0000297g0040 Nicotiana tabacum HOM05D000461 ORTHO05D009042 1.2e-55 220.7 272 45.6
Sc03g0009630 Simmondsia chinensis HOM05D000461 ORTHO05D009042 1.6e-55 220.3 193 57.5
Gohir.A01G068300 Gossypium hirsutum HOM05D000461 ORTHO05D009042 2.1e-55 219.9 146 72.6
Gohir.D01G055600 Gossypium hirsutum HOM05D000461 ORTHO05D009042 2.1e-55 219.9 146 72.6
GSVIVG01014422001 Vitis vinifera HOM05D000461 ORTHO05D009042 2.1e-55 219.9 147 70.7
Ca_29614_v3 Cicer arietinum L. HOM05D000461 ORTHO05D009042 2.7e-55 219.5 182 60.4
TPR.G32851 Trifolium pratense HOM05D000461 ORTHO05D009042 2.7e-55 219.5 241 50.6
TAR626G1568 Trochodendron aralioides HOM05D000461 ORTHO05D009042 3.5e-55 219.2 160 67.5
Lalb_Chr01g0017011 Lupinus albus HOM05D000461 ORTHO05D009042 4.6e-55 218.8 183 58.5
Phvul.005G086500 Phaseolus vulgaris HOM05D000461 ORTHO05D009042 4.6e-55 218.8 241 50.6
Medtr2g080290 Medicago truncatula HOM05D000461 ORTHO05D009042 6.0e-55 218.4 193 57.5
Aqoxy1G02771 Aquilegia oxysepala HOM05D000461 ORTHO05D009042 1.3e-54 217.2 179 60.3
Lalb_Chr25g0286691 Lupinus albus HOM05D000461 ORTHO05D009042 1.3e-54 217.2 180 58.9
DCAR_013076 Daucus carota HOM05D000461 ORTHO05D009768 1.7e-54 216.9 177 60.5
Potri.001G405800 Populus trichocarpa HOM05D000461 ORTHO05D009042 1.7e-54 216.9 198 56.1
Sed0008890 Sechium edule HOM05D000461 ORTHO05D009042 1.7e-54 216.9 174 62.1
Ah.04g164980 Amaranthus hybridus HOM05D000461 ORTHO05D009042 2.3e-54 216.5 184 57.6
Sabra16G0269500 Salix brachista HOM05D000461 ORTHO05D009042 2.3e-54 216.5 224 51.8
CANSAT11G1238 Cannabis sativa HOM05D000461 ORTHO05D009042 3.0e-54 216.1 178 59.6
Gorai.002G075700 Gossypium raimondii HOM05D000461 ORTHO05D009042 5.1e-54 215.3 149 71.8
Sabra16G0267700 Salix brachista HOM05D000461 ORTHO05D009042 5.1e-54 215.3 228 50.9
Cc05_g12620 Coffea canephora HOM05D000461 ORTHO05D009042 8.6e-54 214.5 181 60.2
Lsat_1_v5_gn_7_106400 Lactuca sativa HOM05D000461 ORTHO05D009042 1.9e-53 213.4 180 57.8
MD03G1219800 Malus domestica HOM05D000461 ORTHO05D009042 1.9e-53 213.4 147 68.0
Glyma.12G220000 Glycine max HOM05D000461 ORTHO05D009042 3.3e-53 212.6 236 51.3
Actinidia25643 Actinidia chinensis HOM05D000461 ORTHO05D009042 7.3e-53 211.5 192 55.2
SGA_v2.0_scaffold73G24312 Striga asiatica HOM05D000461 ORTHO05D009042 7.3e-53 211.5 192 59.4
Nitab4.5_0002565g0040 Nicotiana tabacum HOM05D000461 ORTHO05D009042 6.2e-52 208.4 257 45.5
MSTRG.15210 Avicennia marina HOM05D000461 ORTHO05D009042 1.4e-51 207.2 260 49.2
PSO210G3087 Papaver somniferum HOM05D000461 ORTHO05D009042 1.4e-51 207.2 199 54.3
CDE05G1014 Ceratophyllum demersum HOM05D000461 ORTHO05D009042 2.0e-50 203.4 172 61.6
Migut.M00872 Erythranthe guttata HOM05D000461 ORTHO05D009042 5.8e-50 201.8 197 54.8
arahy.Tifrunner.gnm1.ann1.20QRXD Arachis hypogaea HOM05D000461 ORTHO05D009042 8.4e-49 198.0 181 56.4
Actinidia18752 Actinidia chinensis HOM05D000461 ORTHO05D009042 1.1e-48 197.6 219 48.9
Lj3g0027305 Lotus japonicus HOM05D000461 ORTHO05D009042 1.1e-48 197.6 202 54.0
arahy.Tifrunner.gnm1.ann1.IDBP1F Arachis hypogaea HOM05D000461 ORTHO05D009042 1.9e-48 196.8 183 56.8
PSO832G2223 Papaver somniferum HOM05D000461 ORTHO05D009042 7.1e-48 194.9 210 50.5
Oeu005436.1 Olea europaea HOM05D000461 ORTHO05D009042 1.0e-46 191.0 125 68.0
ECA236G1699 Erigeron canadensis HOM05D003383 ORTHO05D003890 8.7e-46 188.0 141 59.6
HanXRQChr11g0330871 Helianthus annuus HOM05D000461 ORTHO05D009042 8.7e-46 188.0 173 54.9
EL10Ac4g08079 Beta vulgaris HOM05D000461 ORTHO05D009042 3.3e-45 186.0 239 43.9
Actinidia35273 Actinidia chinensis HOM05D000461 ORTHO05D009042 8.4e-41 171.4 185 53.5
Peaxi162Scf01216g00058 Petunia axillaris HOM05D000461 ORTHO05D009042 1.2e-39 167.5 154 53.2
vmacro09553 Vaccinium macrocarpon HOM05D000461 ORTHO05D009042 1.6e-39 167.2 309 36.2
Os05g0502500 Oryza sativa ssp. japonica HOM05D000461 ORTHO05D009042 6.0e-39 165.2 188 50.0
FvH4_3g20860 Fragaria vesca HOM05D000461 ORTHO05D009042 7.8e-39 164.9 136 57.4
HPP92_001809 Vanilla planifolia HOM05D000461 ORTHO05D009042 3.3e-37 159.5 122 60.7
AUR62029322 Chenopodium quinoa HOM05D000461 ORTHO05D009042 7.3e-37 158.3 193 47.2
Zm00001eb352790 Zea mays HOM05D000461 ORTHO05D009042 8.1e-36 154.8 179 46.9
AUR62015609 Chenopodium quinoa HOM05D000461 ORTHO05D009042 2.4e-35 153.3 193 46.6
Mapoly0059s0039 Marchantia polymorpha HOM05D000461 ORTHO05D009042 2.4e-35 153.3 163 46.6
RcHm_v2.0_Chr5g0035211 Rosa chinensis HOM05D000461 ORTHO05D009042 9.9e-34 147.9 109 61.5
PGSC0003DMG400019287 Solanum tuberosum HOM05D000461 ORTHO05D009042 7.1e-32 141.7 89 69.7
MELO3C016549.2 Cucumis melo HOM05D000461 ORTHO05D009042 9.3e-32 141.4 100 66.0
Hund28424 Selenicereus undatus HOM05D000461 ORTHO05D009042 3.5e-31 139.4 207 42.5
Hund28429 Selenicereus undatus HOM05D000461 ORTHO05D009042 3.5e-31 139.4 207 42.5
SMO347G0332 Selaginella moellendorffii HOM05D000461 ORTHO05D009042 4.6e-31 139.0 182 41.2
Hma1.2p1_1003F.1_g246740 Hydrangea macrophylla HOM05D000461 ORTHO05D009042 6.2e-28 128.6 87 65.5
Haze_09518 Corylus avellana HOM05D000461 ORTHO05D009042 1.4e-27 127.5 208 40.9
CSS0035681 Camellia sinensis var. sinensis HOM05D000461 ORTHO05D009042 5.3e-27 125.6 105 60.0
VMungo1080G0679 Vigna mungo HOM05D000461 ORTHO05D009042 9.9e-26 121.3 152 48.0
Pp3c5_7600 Physcomitrium patens HOM05D000461 ORTHO05D009042 9.3e-24 114.8 184 38.6
CBR_g3118 Chara braunii HOM05D000461 ORTHO05D009042 1.9e-21 107.1 143 39.9
Manes.15G162800 Manihot esculenta HOM05D000461 ORTHO05D009042 4.3e-21 105.9 88 58.0
ATR0693G207 Amborella trichopoda HOM05D000461 ORTHO05D009042 6.9e-19 98.6 85 58.8
unitig_85.g27405 Utricularia gibba HOM05D000461 ORTHO05D009042 1.4e-11 74.3 141 36.9
FAN25G1192 Fragaria x ananassa HOM05D000461 ORTHO05D009042 3.8e-09 66.2 55 69.1
AagrBONN_evm.TU.Sc2ySwM_117.739 Anthoceros agrestis HOM05D000461 ORTHO05D009042 5.5e-08 62.4 88 42.0
MELO3C030131.2 Cucumis melo HOM05D004229 ORTHO05D025211 1.2e-07 61.2 92 40.2
MBI18_g11113_MAGBIO Magnolia biondii HOM05D000461 ORTHO05D009042 2.1e-07 60.5 82 42.7


User provided reference genes

Program Settings