Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR234610 Cardamine hirsuta HOM05D005753 ORTHO05D007034 6.3e-45 183.7 93 100.0
Carub.0007s1385 Capsella rubella HOM05D005753 ORTHO05D007034 3.5e-19 98.2 58 84.5
C07p55070 Brassica napus HOM05D005753 ORTHO05D007034 5.1e-18 94.4 57 73.7
Sp7g24940 Schrenkiella parvula HOM05D005753 ORTHO05D007034 5.1e-18 94.4 57 78.9
BraA03t14769Z Brassica rapa HOM05D006843 ORTHO05D008517 8.6e-18 93.6 57 73.7
BolC7t46005H Brassica oleracea HOM05D006843 ORTHO05D008517 1.9e-17 92.4 57 71.9
THA.LOC104818102 Tarenaya hassleriana HOM05D005753 ORTHO05D007034 7.3e-17 90.5 61 72.1
Thhalv10025144m.g Eutrema salsugineum HOM05D005753 ORTHO05D007034 1.6e-16 89.4 56 76.8
BcaC06g32718 Brassica carinata HOM05D005753 ORTHO05D007034 2.1e-16 89.0 58 72.4
A03p57000 Brassica napus HOM05D005753 ORTHO05D007034 8.1e-16 87.0 63 66.7
Aa31LG5G10420 Aethionema arabicum HOM05D005753 ORTHO05D007034 4.0e-15 84.7 57 75.4
BcaNung03574 Brassica carinata HOM05D005753 ORTHO05D007034 1.5e-14 82.8 57 70.2
C01p23110 Brassica napus HOM05D005753 ORTHO05D007034 1.5e-14 82.8 57 70.2
BolC1t02245H Brassica oleracea HOM05D005753 ORTHO05D007034 1.5e-14 82.8 57 70.2
BraA01t01770Z Brassica rapa HOM05D005753 ORTHO05D007034 4.4e-14 81.3 57 68.4
A01p18150 Brassica napus HOM05D005753 ORTHO05D007034 1.3e-13 79.7 57 66.7
BcaNung03572 Brassica carinata HOM05D005753 ORTHO05D007034 2.2e-13 79.0 57 64.9
Thhalv10015348m.g Eutrema salsugineum HOM05D005753 ORTHO05D007034 6.4e-13 77.4 64 62.5
AL8G30390 Arabidopsis lyrata HOM05D005753 ORTHO05D007034 1.1e-12 76.6 61 63.9
AT5G54920 Arabidopsis thaliana HOM05D005753 ORTHO05D007034 1.4e-12 76.3 62 61.3
Ciclev10007877m.g Citrus clementina HOM05D005753 ORTHO05D007034 1.4e-12 76.3 60 63.3
arahy.Tifrunner.gnm1.ann1.2B36BL Arachis hypogaea HOM05D005753 ORTHO05D007034 7.1e-12 73.9 54 63.0
arahy.Tifrunner.gnm1.ann1.F03U7D Arachis hypogaea HOM05D005753 ORTHO05D007034 7.1e-12 73.9 54 63.0
AT4G26990 Arabidopsis thaliana HOM05D005753 ORTHO05D007034 1.6e-11 72.8 59 64.4
Cpa.g.sc97.11 Carica papaya HOM05D005753 ORTHO05D007034 1.6e-11 72.8 60 61.7
MD03G1202100 Malus domestica HOM05D005753 ORTHO05D007034 2.1e-11 72.4 47 74.5
Prupe.4G211900 Prunus persica HOM05D005753 ORTHO05D007034 2.1e-11 72.4 50 70.0
Atru.chr2.3344 Acer truncatum HOM05D005753 ORTHO05D007034 2.7e-11 72.0 60 60.0
Carub.0008s1522 Capsella rubella HOM05D005753 ORTHO05D007034 1.0e-10 70.1 61 59.0
AUR62015759 Chenopodium quinoa HOM05D005753 ORTHO05D007034 1.0e-10 70.1 50 62.0
AL7G25840 Arabidopsis lyrata HOM05D005753 ORTHO05D007034 1.3e-10 69.7 59 62.7
CARHR268260 Cardamine hirsuta HOM05D005753 ORTHO05D007034 1.3e-10 69.7 65 56.9
Duzib213G1063 Durio zibethinus HOM05D005753 ORTHO05D007034 1.3e-10 69.7 57 63.2
CANSAT78G0206 Cannabis sativa HOM05D005753 ORTHO05D007034 1.7e-10 69.3 44 75.0
MELO3C025386.2 Cucumis melo HOM05D005753 ORTHO05D007034 1.7e-10 69.3 49 65.3
CsaV3_3G005190 Cucumis sativus L. HOM05D005753 ORTHO05D007034 1.7e-10 69.3 49 65.3
RcHm_v2.0_Chr5g0039281 Rosa chinensis HOM05D005753 ORTHO05D007034 1.7e-10 69.3 50 68.0
Sed0020363 Sechium edule HOM05D005753 ORTHO05D007034 2.3e-10 68.9 49 65.3
COL.COLO4_09655 Corchorus olitorius HOM05D005753 ORTHO05D007034 3.0e-10 68.6 57 61.4
SHI26621 Sapria himalayana HOM05D005753 ORTHO05D007034 3.0e-10 68.6 54 59.3
Thecc.07G038900 Theobroma cacao HOM05D005753 ORTHO05D007034 3.0e-10 68.6 57 59.6
AUR62020456 Chenopodium quinoa HOM05D005753 ORTHO05D007034 5.1e-10 67.8 57 57.9
FAN21G2493 Fragaria x ananassa HOM05D005753 ORTHO05D007034 5.1e-10 67.8 53 60.4
FAN25G0533 Fragaria x ananassa HOM05D005753 ORTHO05D007034 5.1e-10 67.8 53 60.4
ECA236G0832 Erigeron canadensis HOM05D005753 ORTHO05D007034 6.6e-10 67.4 53 62.3
FvH4_3g22540 Fragaria vesca HOM05D005753 ORTHO05D007034 6.6e-10 67.4 47 68.1
FAN11G3996 Fragaria x ananassa HOM05D005753 ORTHO05D007034 8.7e-10 67.0 46 69.6
Gohir.D05G369100 Gossypium hirsutum HOM05D005753 ORTHO05D007034 8.7e-10 67.0 57 59.6
Gorai.009G437800 Gossypium raimondii HOM05D005753 ORTHO05D007034 8.7e-10 67.0 57 59.6
Cfa020355 Carpinus fangiana HOM05D005753 ORTHO05D007034 1.1e-09 66.6 49 63.3
ClCG10G005460 Citrullus lanatus HOM05D005753 ORTHO05D007034 1.1e-09 66.6 53 56.6
Manes.15G072600 Manihot esculenta HOM05D005753 ORTHO05D007034 1.1e-09 66.6 45 71.1
Gohir.A04G017100 Gossypium hirsutum HOM05D005753 ORTHO05D007034 1.5e-09 66.2 57 59.6
Haze_09667 Corylus avellana HOM05D005753 ORTHO05D007034 1.9e-09 65.9 49 63.3
TWI38G1056 Tripterygium wilfordii HOM05D005753 ORTHO05D007034 2.5e-09 65.5 57 57.9
FAN16G1141 Fragaria x ananassa HOM05D005753 ORTHO05D007034 3.3e-09 65.1 47 66.0
Hund02053 Selenicereus undatus HOM05D005753 ORTHO05D007034 3.3e-09 65.1 51 62.7
CiPaw.11G188500 Carya illinoinensis HOM05D005753 ORTHO05D007034 4.3e-09 64.7 47 61.7
Dinv40749 Davidia involucrata HOM05D005753 ORTHO05D007034 4.3e-09 64.7 50 58.0
Ah.06g186160 Amaranthus hybridus HOM05D005753 ORTHO05D007034 5.6e-09 64.3 50 62.0
Lalb_Chr15g0081011 Lupinus albus HOM05D005753 ORTHO05D007034 5.6e-09 64.3 58 53.4
QL08p010535 Quercus lobata HOM05D005753 ORTHO05D007034 5.6e-09 64.3 50 58.0
Duzib170G0684 Durio zibethinus HOM05D005753 ORTHO05D007034 7.3e-09 63.9 37 81.1
Medtr3g051270 Medicago truncatula HOM05D005753 ORTHO05D007034 7.3e-09 63.9 63 54.0
PSO210G3457 Papaver somniferum HOM05D005753 ORTHO05D007034 7.3e-09 63.9 45 66.7
PSO832G3698 Papaver somniferum HOM05D005753 ORTHO05D007034 7.3e-09 63.9 45 66.7
Psat5g180520 Pisum sativum HOM05D005753 ORTHO05D007034 7.3e-09 63.9 64 59.4
Ca_14723_v3 Cicer arietinum L. HOM05D005753 ORTHO05D007034 9.6e-09 63.5 67 53.7
RhsimUnG0251100 Rhododendron simsii HOM05D005753 ORTHO05D007034 9.6e-09 63.5 60 51.7
Lsat_1_v5_gn_7_108641 Lactuca sativa HOM05D005753 ORTHO05D007034 1.3e-08 63.2 55 54.5
Potri.011G138600 Populus trichocarpa HOM05D005753 ORTHO05D007034 1.3e-08 63.2 53 58.5
EL10Ac4g07817 Beta vulgaris HOM05D005753 ORTHO05D007034 2.8e-08 62.0 55 52.7
Lj6g0004879 Lotus japonicus HOM05D005753 ORTHO05D007034 2.8e-08 62.0 42 64.3
Oeu007583.4 Olea europaea HOM05D005753 ORTHO05D007034 3.6e-08 61.6 52 57.7
Solyc07g064550.3 Solanum lycopersicum HOM05D005753 ORTHO05D007034 4.8e-08 61.2 57 50.9
vmacro09719 Vaccinium macrocarpon HOM05D005753 ORTHO05D007034 4.8e-08 61.2 48 58.3
Potri.001G423200 Populus trichocarpa HOM05D005753 ORTHO05D007034 6.2e-08 60.8 53 56.6
Sabra11G0124200 Salix brachista HOM05D005753 ORTHO05D007034 6.2e-08 60.8 53 56.6
Sopen07g032730 Solanum pennellii HOM05D005753 ORTHO05D007034 6.2e-08 60.8 57 52.6
Gohir.A04G008750 Gossypium hirsutum HOM05D005753 ORTHO05D007034 8.1e-08 60.5 61 52.5
Manes.03G128700 Manihot esculenta HOM05D005753 ORTHO05D007034 8.1e-08 60.5 57 52.6
CAN.G337.126 Capsicum annuum HOM05D005753 ORTHO05D007034 1.1e-07 60.1 53 56.6
PGSC0003DMG400022322 Solanum tuberosum HOM05D005753 ORTHO05D007034 1.1e-07 60.1 57 52.6
Sabra16G0289400 Salix brachista HOM05D005753 ORTHO05D007034 1.4e-07 59.7 53 54.7
Sc07g0002780 Simmondsia chinensis HOM05D005753 ORTHO05D007034 1.4e-07 59.7 50 58.0
TWI38G0917 Tripterygium wilfordii HOM05D005753 ORTHO05D007034 1.4e-07 59.7 57 54.4
GSVIVG01037637001 Vitis vinifera HOM05D005753 ORTHO05D007034 1.4e-07 59.7 57 50.9
Cc05_g13740 Coffea canephora HOM05D005753 ORTHO05D007034 1.8e-07 59.3 50 52.0
Nitab4.5_0003812g0080 Nicotiana tabacum HOM05D005753 ORTHO05D004173 2.4e-07 58.9 51 52.9
CSS0005908 Camellia sinensis var. sinensis HOM05D005753 ORTHO05D007034 4.0e-07 58.2 43 60.5
CSS0033352 Camellia sinensis var. sinensis HOM05D005753 ORTHO05D007034 4.0e-07 58.2 43 60.5
CSS0040669 Camellia sinensis var. sinensis HOM05D005753 ORTHO05D007034 4.0e-07 58.2 43 60.5
Glyma.08G315100 Glycine max HOM05D005753 ORTHO05D007034 4.0e-07 58.2 42 64.3
Nitab4.5_0001913g0030 Nicotiana tabacum HOM05D005753 ORTHO05D007034 5.3e-07 57.8 48 54.2
Phvul.006G042100 Phaseolus vulgaris HOM05D005753 ORTHO05D007034 5.3e-07 57.8 45 57.8
PGR083G0792 Punica granatum HOM05D005753 ORTHO05D007034 6.9e-07 57.4 53 54.7
MSTRG.15152 Avicennia marina HOM05D005753 ORTHO05D007034 9.0e-07 57.0 43 60.5
TPR.G16572 Trifolium pratense HOM05D005753 ORTHO05D007034 9.0e-07 57.0 38 71.1
Actinidia10731 Actinidia chinensis HOM05D005753 ORTHO05D007034 1.2e-06 56.6 49 51.0
Actinidia35339 Actinidia chinensis HOM05D005753 ORTHO05D007034 1.2e-06 56.6 49 49.0
Migut.M01771 Erythranthe guttata HOM05D005753 ORTHO05D007034 2.6e-06 55.5 43 58.1
Oeu062590.1 Olea europaea HOM05D005753 ORTHO05D007034 2.6e-06 55.5 55 47.3
Zm00001eb070120 Zea mays HOM05D005753 ORTHO05D007034 2.6e-06 55.5 45 51.1
HanXRQChr15g0494351 Helianthus annuus HOM05D005753 ORTHO05D007034 3.4e-06 55.1 36 66.7
TAR629G3535 Trochodendron aralioides HOM05D005753 ORTHO05D007034 3.4e-06 55.1 52 48.1
Peaxi162Scf00964g00029 Petunia axillaris HOM05D005753 ORTHO05D007034 4.4e-06 54.7 39 66.7
Eucgr.F00770 Eucalyptus grandis HOM05D005753 ORTHO05D007034 5.8e-06 54.3 44 54.5
Os04g0625900 Oryza sativa ssp. japonica HOM05D005753 ORTHO05D007034 5.8e-06 54.3 44 52.3
Lj1A871G90 Lonicera japonica HOM05D005753 ORTHO05D007034 7.6e-06 53.9 56 44.6
Oeu042934.1 Olea europaea HOM05D005753 ORTHO05D007034 7.6e-06 53.9 53 49.1
HanXRQChr16g0515041 Helianthus annuus HOM05D005753 ORTHO05D007034 9.9e-06 53.5 36 61.1


User provided reference genes

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