Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR232280 Cardamine hirsuta HOM05D005744 ORTHO05D007503 7.1e-245 850.1 419 100.0
AL7G28320 Arabidopsis lyrata HOM05D005744 ORTHO05D007503 6.7e-227 790.4 419 92.1
Carub.0007s1619 Capsella rubella HOM05D005744 ORTHO05D007503 1.1e-226 789.6 419 92.1
Sp7g22860 Schrenkiella parvula HOM05D005744 ORTHO05D007503 2.5e-226 788.5 421 90.7
Thhalv10025348m.g Eutrema salsugineum HOM05D005744 ORTHO05D007503 7.6e-223 776.9 406 91.4
BraA03t14628Z Brassica rapa HOM05D005744 ORTHO05D007503 2.7e-220 768.5 421 88.4
A03p55610 Brassica napus HOM05D005744 ORTHO05D007503 2.3e-219 765.4 421 88.4
BcaC06g32852 Brassica carinata HOM05D005744 ORTHO05D007503 3.0e-219 765.0 421 88.4
BolC7t45875H Brassica oleracea HOM05D005744 ORTHO05D007503 2.5e-218 761.9 421 88.1
C07p53850 Brassica napus HOM05D005744 ORTHO05D007503 4.3e-218 761.1 421 88.1
THA.LOC104825016 Tarenaya hassleriana HOM05D005744 ORTHO05D007503 3.0e-195 685.3 417 79.6
Gorai.008G206000 Gossypium raimondii HOM05D005744 ORTHO05D007503 5.5e-181 637.9 420 73.6
Gohir.D12G191700 Gossypium hirsutum HOM05D005744 ORTHO05D007503 3.6e-180 635.2 420 73.1
AT4G24880 Arabidopsis thaliana HOM05D005744 ORTHO05D007503 6.1e-180 634.4 333 91.3
Gohir.A12G189400 Gossypium hirsutum HOM05D005744 ORTHO05D007503 5.2e-179 631.3 420 72.9
COL.COLO4_28103 Corchorus olitorius HOM05D005744 ORTHO05D007503 2.6e-178 629.0 423 72.6
Thecc.03G128600 Theobroma cacao HOM05D005744 ORTHO05D007503 1.1e-176 623.6 420 71.4
GSVIVG01008538001 Vitis vinifera HOM05D005744 ORTHO05D007503 1.1e-176 623.6 420 71.4
Manes.14G051500 Manihot esculenta HOM05D005744 ORTHO05D007503 1.6e-175 619.8 426 70.4
Ciclev10020324m.g Citrus clementina HOM05D005744 ORTHO05D007503 2.7e-175 619.0 422 72.0
CSS0041302 Camellia sinensis var. sinensis HOM05D005744 ORTHO05D007503 3.8e-174 615.1 414 71.0
Atru.chr9.1122 Acer truncatum HOM05D005744 ORTHO05D007503 6.1e-172 607.8 421 70.5
CiPaw.11G008100 Carya illinoinensis HOM05D005744 ORTHO05D007503 6.1e-172 607.8 421 70.1
Rhsim08G0189700 Rhododendron simsii HOM05D005744 ORTHO05D007503 5.2e-171 604.7 416 69.7
RhsimUnG0231400 Rhododendron simsii HOM05D005744 ORTHO05D007503 6.8e-171 604.4 416 69.7
Sed0005313 Sechium edule HOM05D005744 ORTHO05D007503 1.2e-170 603.6 416 68.3
Potri.015G095400 Populus trichocarpa HOM05D005744 ORTHO05D007503 2.0e-170 602.8 416 70.2
QL10p003203 Quercus lobata HOM05D005744 ORTHO05D007503 1.3e-169 600.1 417 70.5
Nn3g16475 Nelumbo nucifera HOM05D005744 ORTHO05D007503 2.9e-169 599.0 420 67.9
CANSAT80G0573 Cannabis sativa HOM05D005744 ORTHO05D007503 6.4e-169 597.8 422 67.5
ClCG06G017860 Citrullus lanatus HOM05D005744 ORTHO05D007503 8.3e-169 597.4 422 68.2
arahy.Tifrunner.gnm1.ann1.DQ5P63 Arachis hypogaea HOM05D005744 ORTHO05D007503 9.2e-168 594.0 418 68.4
Sabra15G0116400 Salix brachista HOM05D005744 ORTHO05D007503 7.8e-167 590.9 423 68.1
arahy.Tifrunner.gnm1.ann1.SJIN4P Arachis hypogaea HOM05D005744 ORTHO05D007503 1.7e-166 589.7 421 68.6
Prupe.5G151700 Prunus persica HOM05D005744 ORTHO05D007503 3.9e-166 588.6 419 68.0
HanXRQChr16g0498211 Helianthus annuus HOM05D005744 ORTHO05D007503 8.6e-166 587.4 420 67.9
Lsat_1_v5_gn_4_80081 Lactuca sativa HOM05D005744 ORTHO05D007503 1.5e-165 586.6 418 67.5
Cfa018827 Carpinus fangiana HOM05D005744 ORTHO05D007503 1.9e-165 586.3 423 67.8
DCAR_021616 Daucus carota HOM05D005744 ORTHO05D007503 1.9e-165 586.3 433 65.8
MELO3C026209.2 Cucumis melo HOM05D005744 ORTHO05D007503 2.5e-165 585.9 421 66.5
CsaV3_1G000590 Cucumis sativus L. HOM05D005744 ORTHO05D007503 3.3e-165 585.5 421 67.0
Lj1g0015277 Lotus japonicus HOM05D005744 ORTHO05D007503 7.3e-165 584.3 417 67.6
PGR044G2189 Punica granatum HOM05D005744 ORTHO05D007503 8.0e-164 580.9 383 73.6
Cc08_g16880 Coffea canephora HOM05D005744 ORTHO05D007503 3.1e-163 578.9 409 68.2
Aqoxy3G01542 Aquilegia oxysepala HOM05D005744 ORTHO05D007503 5.2e-163 578.2 417 66.7
Lalb_Chr08g0237111 Lupinus albus HOM05D005744 ORTHO05D007503 5.2e-163 578.2 418 65.8
EL10As4g23384 Beta vulgaris HOM05D005744 ORTHO05D007503 1.5e-162 576.6 423 66.7
Psat5g140680 Pisum sativum HOM05D005744 ORTHO05D007503 2.6e-162 575.9 417 66.4
RcHm_v2.0_Chr7g0190291 Rosa chinensis HOM05D005744 ORTHO05D007503 4.4e-162 575.1 417 66.2
MSTRG.13706 Avicennia marina HOM05D005744 ORTHO05D007503 9.8e-162 573.9 412 65.5
Oeu010732.1 Olea europaea HOM05D005744 ORTHO05D007503 1.3e-161 573.5 417 65.9
MD14G1157700 Malus domestica HOM05D005744 ORTHO05D007503 2.2e-161 572.8 420 66.7
Ca_24503_v3 Cicer arietinum L. HOM05D005744 ORTHO05D007503 2.9e-161 572.4 418 66.0
Migut.E00304 Erythranthe guttata HOM05D005744 ORTHO05D007503 6.4e-161 571.2 418 66.3
Peaxi162Scf00074g00136 Petunia axillaris HOM05D005744 ORTHO05D007503 2.4e-160 569.3 403 68.7
ECA232G3603 Erigeron canadensis HOM05D005744 ORTHO05D007503 3.2e-160 568.9 423 65.5
Medtr3g074980 Medicago truncatula HOM05D005744 ORTHO05D007503 5.4e-160 568.2 418 66.5
Aa31LG7G10960 Aethionema arabicum HOM05D005744 ORTHO05D007503 1.2e-159 567.0 298 88.9
Nitab4.5_0002720g0090 Nicotiana tabacum HOM05D005744 ORTHO05D007503 1.0e-158 563.9 440 64.3
Glyma.06G170500 Glycine max HOM05D005744 ORTHO05D007503 1.7e-158 563.1 420 65.7
Eucgr.K02730 Eucalyptus grandis HOM05D005744 ORTHO05D007503 5.0e-158 561.6 445 63.6
FAN18G3767 Fragaria x ananassa HOM05D005744 ORTHO05D007503 6.6e-158 561.2 417 64.7
PGSC0003DMG400012114 Solanum tuberosum HOM05D005744 ORTHO05D007503 8.6e-158 560.8 408 67.6
Actinidia25578 Actinidia chinensis HOM05D005744 ORTHO05D007503 2.5e-157 559.3 403 67.2
Solyc08g083260.3 Solanum lycopersicum HOM05D005744 ORTHO05D007503 3.3e-157 558.9 412 67.0
TPR.G26152 Trifolium pratense HOM05D005744 ORTHO05D007503 5.6e-157 558.1 418 65.1
Sopen08g031450 Solanum pennellii HOM05D005744 ORTHO05D007503 7.3e-157 557.8 412 67.0
VMungo1309G1043 Vigna mungo HOM05D005744 ORTHO05D007503 9.5e-157 557.4 428 64.3
FvH4_5g08230 Fragaria vesca HOM05D005744 ORTHO05D007503 1.2e-156 557.0 417 64.5
Duzib205G1133 Durio zibethinus HOM05D005744 ORTHO05D007503 2.8e-156 555.8 420 66.7
Phvul.009G166600 Phaseolus vulgaris HOM05D005744 ORTHO05D007503 1.8e-155 553.1 432 63.4
FAN08G2910 Fragaria x ananassa HOM05D005744 ORTHO05D007503 4.0e-155 552.0 417 63.8
vmacro19203 Vaccinium macrocarpon HOM05D005744 ORTHO05D007503 4.0e-155 552.0 472 59.3
PSO782G2798 Papaver somniferum HOM05D005744 ORTHO05D007503 1.5e-154 550.1 415 63.6
TPR.G12158 Trifolium pratense HOM05D005744 ORTHO05D007503 2.0e-154 549.7 418 64.4
CDE05G2332 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 2.6e-154 549.3 420 64.5
MBI07_g31012_MAGBIO Magnolia biondii HOM05D005744 ORTHO05D007503 2.2e-153 546.2 433 63.7
Actinidia33099 Actinidia chinensis HOM05D005744 ORTHO05D007503 1.4e-152 543.5 414 65.0
FAN13G0489 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.4e-152 543.5 458 60.0
PSO801G0019 Papaver somniferum HOM05D005744 ORTHO05D007503 4.1e-152 542.0 411 63.0
Ah.02g114920 Amaranthus hybridus HOM05D005744 ORTHO05D007503 7.1e-152 541.2 449 61.5
Haze_07221 Corylus avellana HOM05D005744 ORTHO05D007503 9.2e-152 540.8 478 58.6
AUR62025939 Chenopodium quinoa HOM05D005744 ORTHO05D007503 1.2e-151 540.4 393 67.4
ATR0561G060 Amborella trichopoda HOM05D005744 ORTHO05D007503 1.6e-151 540.0 411 63.5
AUR62029618 Chenopodium quinoa HOM05D005744 ORTHO05D007503 2.7e-151 539.3 390 67.4
HPP92_020223 Vanilla planifolia HOM05D005744 ORTHO05D007503 3.5e-151 538.9 430 60.7
SalBow5G0293 Salvia bowleyana HOM05D005744 ORTHO05D007503 3.9e-150 535.4 422 61.8
PSO339G3552 Papaver somniferum HOM05D005744 ORTHO05D007503 1.5e-149 533.5 415 61.7
Os01g0101300 Oryza sativa ssp. japonica HOM05D005744 ORTHO05D007503 1.1e-144 517.3 416 60.1
Dinv11169 Davidia involucrata HOM05D005744 ORTHO05D007503 1.4e-144 516.9 418 62.0
Lj9A478G92 Lonicera japonica HOM05D005744 ORTHO05D007503 6.0e-143 511.5 391 65.5
TAR629G2476 Trochodendron aralioides HOM05D005744 ORTHO05D007503 9.6e-141 504.2 331 71.9
CAN.G567.98 Capsicum annuum HOM05D005744 ORTHO05D007503 1.2e-140 503.8 433 60.5
RcHm_v2.0_Chr4g0409241 Rosa chinensis HOM05D005744 ORTHO05D007503 3.2e-136 489.2 420 59.3
SGA_v2.0_scaffold22G09828 Striga asiatica HOM05D005744 ORTHO05D007503 1.3e-132 477.2 403 59.6
Cpa.g.sc2981.2 Carica papaya HOM05D005744 ORTHO05D007503 1.6e-132 476.9 309 75.4
Glyma.04G195500 Glycine max HOM05D005744 ORTHO05D007503 1.2e-130 470.7 316 66.8
Sc04g0000680 Simmondsia chinensis HOM05D005744 ORTHO05D007503 5.8e-130 468.4 299 70.2
Zm00001eb354570 Zea mays HOM05D005744 ORTHO05D007503 1.4e-128 463.8 423 55.3
TAR633G0019 Trochodendron aralioides HOM05D005744 ORTHO05D007503 7.1e-128 461.5 307 67.8
PSO478G2520 Papaver somniferum HOM05D005744 ORTHO05D007503 1.6e-124 450.3 335 63.6
FAN07G2643 Fragaria x ananassa HOM05D005744 ORTHO05D007503 3.4e-122 442.6 328 64.9
FvH4_4g11820 Fragaria vesca HOM05D005744 ORTHO05D007503 2.7e-119 433.0 414 55.6
SalBow5G5674 Salvia bowleyana HOM05D005744 ORTHO05D007503 8.2e-116 421.4 422 51.9
unitig_27.g25288 Utricularia gibba HOM05D005744 ORTHO05D007503 8.2e-116 421.4 421 52.0
Pp3c8_11540 Physcomitrium patens HOM05D005744 ORTHO05D007503 2.2e-113 413.3 423 48.9
Mapoly0024s0037 Marchantia polymorpha HOM05D005744 ORTHO05D007503 2.5e-112 409.8 416 49.0
SMO364G0648 Selaginella moellendorffii HOM05D005744 ORTHO05D007503 7.1e-112 408.3 408 50.5
FAN12G3536 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.9e-101 373.6 311 60.1
Nitab4.5_0000479g0030 Nicotiana tabacum HOM05D005744 ORTHO05D007503 2.8e-100 369.8 278 66.9
SEGI_05259 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 1.7e-97 360.5 316 53.8
FAN12G3591 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.8e-94 350.5 293 59.0
Eucgr.L02977 Eucalyptus grandis HOM05D005744 ORTHO05D007503 2.0e-85 320.5 278 61.9
SEGI_21905 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 1.8e-75 287.3 184 66.3
MCO07G390 Micromonas commoda HOM05D005744 ORTHO05D007503 1.6e-71 274.2 449 37.0
SHI06365 Sapria himalayana HOM05D005744 ORTHO05D007503 7.7e-66 255.4 374 41.4
AagrBONN_evm.TU.Sc2ySwM_344.2997 Anthoceros agrestis HOM05D005744 ORTHO05D007503 1.9e-64 250.8 228 49.1
PRCOL_00001155 Prasinoderma coloniale HOM05D005744 ORTHO05D007503 6.3e-60 235.7 418 37.6
Cre16.g666000 Chlamydomonas reinhardtii HOM05D005744 ORTHO05D007503 9.5e-56 221.9 560 30.5
RcHm_v2.0_Chr4g0407951 Rosa chinensis HOM05D005744 ORTHO05D007503 1.2e-50 204.9 249 48.2
Aa31LG7G10970 Aethionema arabicum HOM05D005744 ORTHO05D007503 5.2e-46 189.5 121 83.5
HanXRQChr10g0289761 Helianthus annuus HOM05D005744 ORTHO05D007503 7.5e-45 185.7 199 46.7
Lsat_1_v5_gn_8_77640 Lactuca sativa HOM05D005744 ORTHO05D007503 7.8e-42 175.6 138 63.8
COL.COLO4_31215 Corchorus olitorius HOM05D005744 ORTHO05D007503 6.6e-41 172.6 127 65.4
QL10p003231 Quercus lobata HOM05D005744 ORTHO05D007503 3.5e-34 150.2 115 63.5
GSVIVG01008540001 Vitis vinifera HOM05D005744 ORTHO05D007503 1.3e-33 148.3 116 61.2
RcHm_v2.0_Chr4g0407901 Rosa chinensis HOM05D005744 ORTHO05D007503 1.2e-26 125.2 255 34.9
CDE12G0192 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 1.9e-24 117.9 140 52.1
Lsat_1_v5_gn_8_150141 Lactuca sativa HOM05D005744 ORTHO05D048266 3.5e-18 97.1 106 44.3
TAR629G1577 Trochodendron aralioides HOM05D005744 ORTHO05D007503 1.4e-11 75.1 57 64.9
CDE05G3540 Ceratophyllum demersum HOM05D005744 ORTHO05D130478 2.7e-10 70.9 114 45.6
SEGI_17145 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 6.7e-09 66.2 64 54.7
HanXRQChr10g0289791 Helianthus annuus HOM05D005744 ORTHO05D048266 4.8e-07 60.1 38 65.8


User provided reference genes

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