Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR232260 Cardamine hirsuta HOM05D004543 ORTHO05D006042 3.7e-312 1074.7 545 100.0
AL7G28340 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 5.9e-268 927.2 533 89.5
Carub.0007s1621 Capsella rubella HOM05D004543 ORTHO05D006042 5.0e-267 924.1 533 88.7
AT4G24840 Arabidopsis thaliana HOM05D004543 ORTHO05D006042 1.1e-261 906.4 533 87.1
Sp7g22830 Schrenkiella parvula HOM05D004543 ORTHO05D006042 1.5e-258 896.0 535 85.0
C01p20140 Brassica napus HOM05D004543 ORTHO05D006042 1.4e-256 889.4 535 83.6
BolC1t01943H Brassica oleracea HOM05D004543 ORTHO05D006042 1.4e-256 889.4 535 83.6
Carub.0003s0428 Capsella rubella HOM05D004543 ORTHO05D006042 8.9e-256 886.7 535 84.3
Thhalv10024490m.g Eutrema salsugineum HOM05D004543 ORTHO05D006042 8.9e-256 886.7 536 84.7
AL3G15410 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 3.4e-255 884.8 535 84.1
BcaC06g32853 Brassica carinata HOM05D004543 ORTHO05D006042 1.1e-253 879.8 535 83.2
BolC7t45874H Brassica oleracea HOM05D004543 ORTHO05D006042 1.1e-253 879.8 535 83.2
A01p16150 Brassica napus HOM05D004543 ORTHO05D006042 1.9e-253 879.0 535 82.6
BraA01t01551Z Brassica rapa HOM05D004543 ORTHO05D006042 1.9e-253 879.0 535 82.6
C07p53840 Brassica napus HOM05D004543 ORTHO05D006042 1.6e-252 875.9 535 82.8
Sp6g25960 Schrenkiella parvula HOM05D004543 ORTHO05D006042 3.5e-252 874.8 549 81.4
A03p55600 Brassica napus HOM05D004543 ORTHO05D006042 3.9e-251 871.3 535 82.8
BraA03t14627Z Brassica rapa HOM05D004543 ORTHO05D006042 3.9e-251 871.3 535 82.8
Aa31LG7G11000 Aethionema arabicum HOM05D004543 ORTHO05D006042 3.0e-243 845.1 560 78.0
BcaB01g05188 Brassica carinata HOM05D004543 ORTHO05D006042 3.0e-243 845.1 536 80.8
BolC3t13508H Brassica oleracea HOM05D004543 ORTHO05D006042 1.3e-238 829.7 536 79.9
A03p08790 Brassica napus HOM05D004543 ORTHO05D006042 1.7e-238 829.3 536 79.9
THA.LOC104811593 Tarenaya hassleriana HOM05D004543 ORTHO05D006042 4.9e-238 827.8 531 78.2
C03p10280 Brassica napus HOM05D004543 ORTHO05D006042 9.3e-237 823.5 536 79.1
BraA03t10204Z Brassica rapa HOM05D004543 ORTHO05D006042 9.3e-237 823.5 536 79.1
BcaNung06004 Brassica carinata HOM05D004543 ORTHO05D006042 7.9e-228 793.9 481 84.4
Thecc.06G039500 Theobroma cacao HOM05D004543 ORTHO05D006042 7.4e-218 760.8 534 71.2
CiPaw.11G008900 Carya illinoinensis HOM05D004543 ORTHO05D006042 7.6e-215 750.7 536 71.1
Dinv11159 Davidia involucrata HOM05D004543 ORTHO05D006042 1.3e-214 750.0 530 70.2
Cfa018837 Carpinus fangiana HOM05D004543 ORTHO05D006042 4.9e-214 748.0 533 71.7
COL.COLO4_26675 Corchorus olitorius HOM05D004543 ORTHO05D006042 4.9e-214 748.0 537 69.8
Haze_07231 Corylus avellana HOM05D004543 ORTHO05D006042 1.9e-213 746.1 533 71.3
arahy.Tifrunner.gnm1.ann1.28ZGNX Arachis hypogaea HOM05D004543 ORTHO05D006042 4.2e-213 745.0 532 70.3
VMungo1215G3183 Vigna mungo HOM05D004543 ORTHO05D006042 5.5e-213 744.6 536 69.0
Lalb_Chr07g0183361 Lupinus albus HOM05D004543 ORTHO05D006042 9.3e-213 743.8 536 69.6
Phvul.003G210200 Phaseolus vulgaris HOM05D004543 ORTHO05D006042 9.3e-213 743.8 536 68.8
CSS0037462 Camellia sinensis var. sinensis HOM05D004543 ORTHO05D006042 1.2e-212 743.4 534 69.7
Duzib138G1537 Durio zibethinus HOM05D004543 ORTHO05D006042 1.6e-212 743.0 548 68.8
Glyma.17G129100 Glycine max HOM05D004543 ORTHO05D006042 1.6e-212 743.0 536 69.4
Ciclev10018979m.g Citrus clementina HOM05D004543 ORTHO05D006042 2.7e-212 742.3 533 68.9
arahy.Tifrunner.gnm1.ann1.9QW7J0 Arachis hypogaea HOM05D004543 ORTHO05D006042 4.6e-212 741.5 532 70.1
Ca_00911_v3 Cicer arietinum L. HOM05D004543 ORTHO05D006042 6.7e-211 737.6 536 68.7
vmacro19212 Vaccinium macrocarpon HOM05D004543 ORTHO05D006042 9.7e-210 733.8 534 68.5
Actinidia25587 Actinidia chinensis HOM05D004543 ORTHO05D006042 1.3e-209 733.4 534 69.1
Manes.06G118300 Manihot esculenta HOM05D004543 ORTHO05D006042 1.3e-209 733.4 536 68.7
QL10p004063 Quercus lobata HOM05D004543 ORTHO05D006042 2.8e-209 732.3 553 68.4
Lj9C477T19 Lonicera japonica HOM05D004543 ORTHO05D006042 8.2e-209 730.7 538 68.6
Glyma.05G047300 Glycine max HOM05D004543 ORTHO05D006042 1.1e-208 730.3 549 66.7
Sed0023388 Sechium edule HOM05D004543 ORTHO05D006042 1.4e-208 729.9 532 67.7
GSVIVG01008523001 Vitis vinifera HOM05D004543 ORTHO05D006042 1.4e-208 729.9 536 68.1
Gohir.A11G168800 Gossypium hirsutum HOM05D004543 ORTHO05D006042 2.4e-208 729.2 533 69.2
Gohir.D11G175000 Gossypium hirsutum HOM05D004543 ORTHO05D006042 3.1e-208 728.8 533 69.2
Gorai.007G187600 Gossypium raimondii HOM05D004543 ORTHO05D006042 6.9e-208 727.6 533 68.9
Dinv04875 Davidia involucrata HOM05D004543 ORTHO05D006042 4.5e-207 724.9 524 69.3
Atru.chr9.1076 Acer truncatum HOM05D004543 ORTHO05D006042 5.0e-206 721.5 533 67.9
Sc04g0000730 Simmondsia chinensis HOM05D004543 ORTHO05D006042 5.0e-206 721.5 531 68.5
BcaNung04937 Brassica carinata HOM05D004543 ORTHO05D006042 3.2e-205 718.8 498 76.3
Actinidia15838 Actinidia chinensis HOM05D004543 ORTHO05D006042 1.8e-203 713.0 543 66.9
FvH4_5g08050 Fragaria vesca HOM05D004543 ORTHO05D006042 3.0e-203 712.2 535 67.9
RcHm_v2.0_Chr7g0190411 Rosa chinensis HOM05D004543 ORTHO05D006042 6.7e-203 711.1 534 65.9
FAN13G0766 Fragaria x ananassa HOM05D004543 ORTHO05D006042 1.1e-202 710.3 535 67.7
FAN18G3295 Fragaria x ananassa HOM05D004543 ORTHO05D006042 1.9e-202 709.5 535 67.7
Nn3g16500 Nelumbo nucifera HOM05D004543 ORTHO05D006042 7.4e-202 707.6 533 66.8
Sed0026192 Sechium edule HOM05D004543 ORTHO05D006042 7.4e-202 707.6 533 65.9
Medtr4g103610 Medicago truncatula HOM05D004543 ORTHO05D006042 2.8e-201 705.7 534 66.1
Lj4g0012876 Lotus japonicus HOM05D004543 ORTHO05D006042 8.2e-201 704.1 536 66.4
FAN04G2916 Fragaria x ananassa HOM05D004543 ORTHO05D006042 1.4e-200 703.4 540 66.9
PGR083G0162 Punica granatum HOM05D004543 ORTHO05D006042 3.1e-200 702.2 530 65.5
MD06G1143400 Malus domestica HOM05D004543 ORTHO05D006042 5.3e-200 701.4 534 66.1
Cc07_g18860 Coffea canephora HOM05D004543 ORTHO05D006042 1.2e-199 700.3 534 65.7
Prupe.5G152600 Prunus persica HOM05D004543 ORTHO05D006042 1.5e-199 699.9 534 66.1
Rhsim08G0188800 Rhododendron simsii HOM05D004543 ORTHO05D006042 2.0e-199 699.5 522 66.7
Migut.I00508 Erythranthe guttata HOM05D004543 ORTHO05D006042 4.5e-199 698.4 532 65.8
PGSC0003DMG400026304 Solanum tuberosum HOM05D004543 ORTHO05D006042 5.9e-199 698.0 531 66.5
Sopen08g002610 Solanum pennellii HOM05D004543 ORTHO05D006042 1.3e-198 696.8 531 66.1
ClCG11G005570 Citrullus lanatus HOM05D004543 ORTHO05D006042 1.7e-198 696.4 535 65.0
Eucgr.B00121 Eucalyptus grandis HOM05D004543 ORTHO05D006042 2.2e-198 696.0 531 66.5
Nitab4.5_0001187g0130 Nicotiana tabacum HOM05D004543 ORTHO05D006042 2.9e-198 695.7 530 65.7
CANSAT80G2145 Cannabis sativa HOM05D004543 ORTHO05D006042 3.8e-198 695.3 535 64.7
TWI23G0493 Tripterygium wilfordii HOM05D004543 ORTHO05D006042 3.8e-198 695.3 534 65.9
Aqoxy5G03415 Aquilegia oxysepala HOM05D004543 ORTHO05D006042 6.5e-198 694.5 537 65.9
MELO3C025044.2 Cucumis melo HOM05D004543 ORTHO05D006042 8.5e-198 694.1 533 64.5
Potri.015G094000 Populus trichocarpa HOM05D004543 ORTHO05D006042 1.1e-197 693.7 537 65.5
CsaV3_6G002430 Cucumis sativus L. HOM05D004543 ORTHO05D006042 1.4e-197 693.3 533 64.5
Sabra15G0115500 Salix brachista HOM05D004543 ORTHO05D006042 2.5e-197 692.6 535 65.8
Nitab4.5_0002497g0060 Nicotiana tabacum HOM05D004543 ORTHO05D006042 3.2e-197 692.2 530 65.5
Hund02429 Selenicereus undatus HOM05D004543 ORTHO05D006042 3.2e-197 692.2 533 65.3
PSO782G5417 Papaver somniferum HOM05D004543 ORTHO05D006042 9.4e-197 690.6 534 64.2
CAN.G906.5 Capsicum annuum HOM05D004543 ORTHO05D006042 3.6e-196 688.7 534 65.5
MD14G1158600 Malus domestica HOM05D004543 ORTHO05D006042 4.7e-196 688.3 536 64.2
Peaxi162Scf00045g00192 Petunia axillaris HOM05D004543 ORTHO05D006042 7.9e-196 687.6 531 66.5
PSO063G5574 Papaver somniferum HOM05D004543 ORTHO05D006042 1.8e-195 686.4 534 63.7
Oeu056011.1 Olea europaea HOM05D004543 ORTHO05D006042 5.1e-195 684.9 539 63.5
Potri.012G096100 Populus trichocarpa HOM05D004543 ORTHO05D006042 2.0e-194 682.9 537 64.8
Cpa.g.sc13.138 Carica papaya HOM05D004543 ORTHO05D006042 5.3e-192 674.9 532 65.8
Migut.I00509 Erythranthe guttata HOM05D004543 ORTHO05D006042 8.5e-190 667.5 532 63.7
AUR62029871 Chenopodium quinoa HOM05D004543 ORTHO05D006042 1.4e-189 666.8 533 63.8
EL10As4g23416 Beta vulgaris HOM05D004543 ORTHO05D006042 2.5e-189 666.0 533 64.0
Hma1.2p1_1271F.1_g271760 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 3.2e-189 665.6 495 67.5
AUR62025843 Chenopodium quinoa HOM05D004543 ORTHO05D006042 3.6e-188 662.1 533 62.7
Lsat_1_v5_gn_4_76761 Lactuca sativa HOM05D004543 ORTHO05D006042 1.4e-187 660.2 536 61.6
unitig_8.g3033 Utricularia gibba HOM05D004543 ORTHO05D006042 2.3e-187 659.4 533 61.4
ECA232G1394 Erigeron canadensis HOM05D004543 ORTHO05D006042 7.4e-186 654.4 531 61.8
SGA_v2.0_scaffold161G37784 Striga asiatica HOM05D004543 ORTHO05D006042 3.7e-185 652.1 536 61.9
HanXRQChr09g0273071 Helianthus annuus HOM05D004543 ORTHO05D006042 2.9e-182 642.5 535 61.9
Zm00001eb210790 Zea mays HOM05D004543 ORTHO05D006042 4.2e-173 612.1 534 58.8
SEGI_19802 Sequoiadendron giganteum HOM05D004543 ORTHO05D006042 4.0e-171 605.5 533 57.8
Os03g0849600 Oryza sativa ssp. japonica HOM05D004543 ORTHO05D006042 1.2e-170 604.0 535 57.9
TAR622G0482 Trochodendron aralioides HOM05D004543 ORTHO05D006042 3.7e-169 599.0 479 63.0
ATR0561G088 Amborella trichopoda HOM05D004543 ORTHO05D006042 1.4e-168 597.0 529 58.8
CDE05G1945 Ceratophyllum demersum HOM05D004543 ORTHO05D006042 1.7e-166 590.1 543 56.5
SHI28598 Sapria himalayana HOM05D004543 ORTHO05D006042 6.5e-166 588.2 599 52.4
FAN08G2446 Fragaria x ananassa HOM05D004543 ORTHO05D006042 1.5e-165 587.0 552 57.4
Psat0s3466g0040 Pisum sativum HOM05D004543 ORTHO05D006042 2.4e-160 569.7 414 68.6
Mapoly0003s0046 Marchantia polymorpha HOM05D004543 ORTHO05D006042 1.9e-149 533.5 534 51.7
AagrBONN_evm.TU.Sc2ySwM_344.2190 Anthoceros agrestis HOM05D004543 ORTHO05D006042 1.6e-140 503.8 532 48.3
HPP92_007000 Vanilla planifolia HOM05D004543 ORTHO05D006042 4.1e-136 489.2 548 49.8
Pp3c14_17740 Physcomitrium patens HOM05D004543 ORTHO05D006042 3.9e-134 482.6 535 49.0
Pp3c17_20170 Physcomitrium patens HOM05D004543 ORTHO05D006042 1.6e-132 477.2 527 48.2
TPR.G19235 Trifolium pratense HOM05D004543 ORTHO05D006042 2.9e-129 466.5 429 58.0
SMO347G0349 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 9.9e-122 441.4 529 44.6
Solyc08g006660.2 Solanum lycopersicum HOM05D004543 ORTHO05D006042 3.1e-115 419.9 335 64.2
Manes.14G052401 Manihot esculenta HOM05D004543 ORTHO05D006042 7.6e-114 415.2 345 60.3
Medtr3g105000 Medicago truncatula HOM05D004543 ORTHO05D006042 4.8e-108 396.0 479 48.6
DCAR_026221 Daucus carota HOM05D004543 ORTHO05D006042 3.5e-95 353.2 339 56.0
CBR_g49627 Chara braunii HOM05D004543 ORTHO05D006042 1.9e-93 347.4 398 46.2
Hma1.2p1_0140F.1_g063450 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 8.5e-81 305.4 225 66.2
PRCOL_00002621 Prasinoderma coloniale HOM05D004543 ORTHO05D006042 2.6e-74 283.9 540 33.5
MCO07G105 Micromonas commoda HOM05D004543 ORTHO05D006042 1.4e-67 261.5 536 32.3
Sabra12G0070400 Salix brachista HOM05D004543 ORTHO05D006042 3.8e-65 253.4 168 74.4
HPP92_006979 Vanilla planifolia HOM05D004543 ORTHO05D006042 8.8e-62 242.3 522 35.8
Zm00001eb064480 Zea mays HOM05D004543 ORTHO05D006042 6.3e-60 236.1 168 67.9
Cre09.g402750 Chlamydomonas reinhardtii HOM05D004543 ORTHO05D006042 7.0e-43 179.5 579 28.5
TPR.G18590 Trifolium pratense HOM05D001327 ORTHO05D002270 2.8e-39 167.5 124 65.3
Lsat_1_v5_gn_5_92440 Lactuca sativa HOM05D004543 ORTHO05D006042 1.0e-33 149.1 151 52.3
TPR.G34490 Trifolium pratense HOM05D004543 ORTHO05D006042 2.5e-32 144.4 102 67.6
Medtr7g104380 Medicago truncatula HOM05D004543 ORTHO05D006042 3.6e-31 140.6 136 57.4
PSO675G5444 Papaver somniferum HOM05D004543 ORTHO05D010954 6.0e-26 123.2 229 36.7
SEGI_01008 Sequoiadendron giganteum HOM05D004543 ORTHO05D037602 6.0e-26 123.2 113 55.8
vmacro20276 Vaccinium macrocarpon HOM05D004543 ORTHO05D037602 2.2e-20 104.8 81 69.1
TPR.G22932 Trifolium pratense HOM05D004543 ORTHO05D037602 2.1e-18 98.2 92 56.5
SMO301G0055 Selaginella moellendorffii HOM05D004543 ORTHO05D000231 4.7e-15 87.0 97 46.4
Hma1.2p1_0140F.1_g063440 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 9.9e-13 79.3 75 52.0
Medtr1g076750 Medicago truncatula HOM05D004543 ORTHO05D006042 4.6e-10 70.5 79 51.9
Lsat_1_v5_gn_3_118241 Lactuca sativa HOM05D004543 ORTHO05D001664 6.0e-10 70.1 103 39.8
Medtr0004s0190 Medicago truncatula HOM05D004543 ORTHO05D260927 3.3e-08 64.3 67 52.2
Medtr6g087290 Medicago truncatula HOM05D004543 ORTHO05D006042 3.3e-08 64.3 88 43.2


User provided reference genes

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