Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR232080 Cardamine hirsuta HOM05D007505 ORTHO05D009476 3.0e-65 251.9 146 100.0
AL7G28500 Arabidopsis lyrata HOM05D007505 ORTHO05D009476 3.4e-45 185.3 141 81.6
Thhalv10026466m.g Eutrema salsugineum HOM05D007505 ORTHO05D009476 3.4e-45 185.3 149 79.2
Carub.0007s1636 Capsella rubella HOM05D007505 ORTHO05D009476 1.3e-44 183.3 143 80.4
AT4G24700 Arabidopsis thaliana HOM05D007505 ORTHO05D009476 2.5e-43 179.1 145 80.0
BraA01t01538Z Brassica rapa HOM05D007505 ORTHO05D009476 2.8e-39 165.6 139 76.3
BcaC09g50839 Brassica carinata HOM05D007505 ORTHO05D009476 4.5e-37 158.3 140 75.7
BcaNung07358 Brassica carinata HOM05D007505 ORTHO05D009476 4.5e-37 158.3 139 69.8
BolC1t01930H Brassica oleracea HOM05D006209 ORTHO05D007645 5.5e-35 151.4 121 72.7
BraA03t14621Z Brassica rapa HOM05D000464 ORTHO05D000408 1.6e-34 149.8 143 64.3
A01p16040 Brassica napus HOM05D006209 ORTHO05D007645 2.1e-34 149.4 121 72.7
A03p55480 Brassica napus HOM05D007505 ORTHO05D009476 3.6e-34 148.7 143 67.1
C01p20030 Brassica napus HOM05D006209 ORTHO05D007645 4.6e-34 148.3 121 71.9
BolC7t45867H Brassica oleracea HOM05D000464 ORTHO05D000408 3.9e-33 145.2 124 67.7
BcaC06g32867 Brassica carinata HOM05D007505 ORTHO05D009476 1.1e-22 110.5 118 56.8
THA.LOC104825178 Tarenaya hassleriana HOM05D007505 ORTHO05D009476 2.7e-18 95.9 144 45.8
THA.LOC104800396 Tarenaya hassleriana HOM05D007505 ORTHO05D009476 1.0e-17 94.0 142 45.8
THA.LOC104800397 Tarenaya hassleriana HOM05D007505 ORTHO05D009476 1.0e-17 94.0 142 45.8
Nitab4.5_0010452g0040 Nicotiana tabacum HOM05D002460 ORTHO05D002716 4.8e-15 85.1 125 44.8
Ciclev10022689m.g Citrus clementina HOM05D007505 ORTHO05D009476 6.3e-15 84.7 149 40.9
Oeu023645.1 Olea europaea HOM05D007505 ORTHO05D009476 1.8e-14 83.2 124 44.4
Dinv38525 Davidia involucrata HOM05D007505 ORTHO05D009476 4.1e-14 82.0 151 43.0
Oeu040858.1 Olea europaea HOM05D007505 ORTHO05D009476 5.3e-14 81.6 126 43.7
Atru.chr9.2580 Acer truncatum HOM05D007505 ORTHO05D009476 7.0e-14 81.3 124 41.9
Cc04_g11490 Coffea canephora HOM05D007505 ORTHO05D009476 7.0e-14 81.3 149 38.3
ClCG03G003000 Citrullus lanatus HOM05D007505 ORTHO05D009476 9.1e-14 80.9 141 41.1
Peaxi162Scf00089g01341 Petunia axillaris HOM05D002460 ORTHO05D002716 9.1e-14 80.9 141 41.8
TWI23G0126 Tripterygium wilfordii HOM05D007505 ORTHO05D009476 9.1e-14 80.9 143 39.2
PGSC0003DMG400018186 Solanum tuberosum HOM05D007505 ORTHO05D009476 1.2e-13 80.5 144 41.7
Aqoxy5G03745 Aquilegia oxysepala HOM05D007505 ORTHO05D009476 1.6e-13 80.1 115 46.1
DCAR_021591 Daucus carota HOM05D007505 ORTHO05D009476 1.6e-13 80.1 145 41.4
SGA_v2.0_scaffold90G27839 Striga asiatica HOM05D007505 ORTHO05D009476 1.6e-13 80.1 122 45.9
CAN.G338.34 Capsicum annuum HOM05D007505 ORTHO05D009476 2.0e-13 79.7 143 41.3
Solyc03g112190.4 Solanum lycopersicum HOM05D002460 ORTHO05D002716 2.0e-13 79.7 139 43.2
Sopen03g031290 Solanum pennellii HOM05D007505 ORTHO05D009476 2.0e-13 79.7 139 43.2
COL.COLO4_36758 Corchorus olitorius HOM05D007505 ORTHO05D009476 3.5e-13 79.0 155 41.9
Sabra15G0107300 Salix brachista HOM05D007505 ORTHO05D009476 5.9e-13 78.2 125 41.6
Migut.O00159 Erythranthe guttata HOM05D007505 ORTHO05D009476 1.0e-12 77.4 137 39.4
MELO3C002298.2 Cucumis melo HOM05D007505 ORTHO05D009476 1.3e-12 77.0 122 42.6
Potri.015G084200 Populus trichocarpa HOM05D007505 ORTHO05D009476 1.3e-12 77.0 142 38.7
vmacro19295 Vaccinium macrocarpon HOM05D007505 ORTHO05D009476 1.3e-12 77.0 123 40.7
FAN08G0495 Fragaria x ananassa HOM05D007505 ORTHO05D009476 1.7e-12 76.6 127 40.2
Prupe.5G165400 Prunus persica HOM05D007505 ORTHO05D009476 1.7e-12 76.6 145 37.2
RcHm_v2.0_Chr7g0192551 Rosa chinensis HOM05D007505 ORTHO05D009476 1.7e-12 76.6 126 42.1
Rhsim08G0177900 Rhododendron simsii HOM05D007505 ORTHO05D009476 2.2e-12 76.3 123 39.8
TAR371G0969 Trochodendron aralioides HOM05D007505 ORTHO05D009476 2.2e-12 76.3 141 40.4
CANSAT80G2368 Cannabis sativa HOM05D007505 ORTHO05D009476 2.9e-12 75.9 165 35.2
Cpa.g.sc159.18 Carica papaya HOM05D007505 ORTHO05D009476 2.9e-12 75.9 147 40.1
ECA247G3499 Erigeron canadensis HOM05D007505 ORTHO05D009476 3.8e-12 75.5 149 38.9
Nn3g16691 Nelumbo nucifera HOM05D007505 ORTHO05D009476 3.8e-12 75.5 109 44.0
Potri.012G086000 Populus trichocarpa HOM05D007505 ORTHO05D009476 3.8e-12 75.5 145 35.2
Actinidia19362 Actinidia chinensis HOM05D007505 ORTHO05D009476 5.0e-12 75.1 144 40.3
SalBow5G2951 Salvia bowleyana HOM05D007505 ORTHO05D009476 5.0e-12 75.1 139 41.0
Duzib205G0367 Durio zibethinus HOM05D007505 ORTHO05D009476 6.5e-12 74.7 108 43.5
FAN13G2123 Fragaria x ananassa HOM05D007505 ORTHO05D009476 6.5e-12 74.7 127 39.4
Nitab4.5_0001793g0050 Nicotiana tabacum HOM05D002460 ORTHO05D002716 1.5e-11 73.6 116 44.0
CiPaw.11G019500 Carya illinoinensis HOM05D007505 ORTHO05D009476 1.9e-11 73.2 145 41.4
FvH4_5g06310 Fragaria vesca HOM05D007505 ORTHO05D009476 1.9e-11 73.2 127 39.4
Glyma.05G041700 Glycine max HOM05D007505 ORTHO05D009476 1.9e-11 73.2 124 41.1
Gohir.A03G057100 Gossypium hirsutum HOM05D007505 ORTHO05D009476 2.5e-11 72.8 132 38.6
Thecc.03G026000 Theobroma cacao HOM05D007505 ORTHO05D009476 2.5e-11 72.8 145 36.6
HanXRQChr02g0035811 Helianthus annuus HOM05D007505 ORTHO05D009476 3.2e-11 72.4 130 38.5
Hma1.2p1_0046F.1_g027150 Hydrangea macrophylla HOM05D007505 ORTHO05D009476 3.2e-11 72.4 146 39.7
FAN18G1005 Fragaria x ananassa HOM05D007505 ORTHO05D009476 4.2e-11 72.0 127 39.4
Glyma.17G084500 Glycine max HOM05D007505 ORTHO05D009476 4.2e-11 72.0 125 40.0
Gohir.D03G109300 Gossypium hirsutum HOM05D007505 ORTHO05D009476 4.2e-11 72.0 132 39.4
Gorai.003G115400 Gossypium raimondii HOM05D007505 ORTHO05D009476 4.2e-11 72.0 132 37.9
CsaV3_1G008840 Cucumis sativus L. HOM05D007505 ORTHO05D009476 9.4e-11 70.9 121 41.3
VMungo1215G0926 Vigna mungo HOM05D007505 ORTHO05D009476 9.4e-11 70.9 122 42.6
Lalb_Chr12g0201901 Lupinus albus HOM05D007505 ORTHO05D009476 1.2e-10 70.5 152 36.2
PSO675G7842 Papaver somniferum HOM05D007505 ORTHO05D009476 1.2e-10 70.5 147 38.8
Cfa019219 Carpinus fangiana HOM05D007505 ORTHO05D009476 1.6e-10 70.1 124 40.3
PSO541G6268 Papaver somniferum HOM05D007505 ORTHO05D009476 2.1e-10 69.7 147 38.8
Cfa019221 Carpinus fangiana HOM05D007505 ORTHO05D009476 3.6e-10 68.9 124 40.3
MD14G1171300 Malus domestica HOM05D007505 ORTHO05D009476 3.6e-10 68.9 119 40.3
QL10p006874 Quercus lobata HOM05D007505 ORTHO05D009476 4.7e-10 68.6 139 38.8
CSS0021026 Camellia sinensis var. sinensis HOM05D007505 ORTHO05D009476 6.1e-10 68.2 115 42.6
MD06G1165700 Malus domestica HOM05D007505 ORTHO05D009476 6.1e-10 68.2 138 37.7
Sed0000715 Sechium edule HOM05D007505 ORTHO05D009476 8.0e-10 67.8 136 38.2
Phvul.003G205200 Phaseolus vulgaris HOM05D007505 ORTHO05D009476 1.0e-09 67.4 85 47.1
Lsat_1_v5_gn_1_27760 Lactuca sativa HOM05D007505 ORTHO05D009476 1.4e-09 67.0 127 37.8
Nitab4.5_0000003g0840 Nicotiana tabacum HOM05D007505 ORTHO05D009476 1.4e-09 67.0 139 41.0
Potri.012G086300 Populus trichocarpa HOM05D007505 ORTHO05D009476 1.8e-09 66.6 108 37.0
arahy.Tifrunner.gnm1.ann1.33YNZL Arachis hypogaea HOM05D007505 ORTHO05D009476 2.3e-09 66.2 134 38.1
Manes.06G110400 Manihot esculenta HOM05D007505 ORTHO05D009476 2.3e-09 66.2 126 41.3
Nitab4.5_0008713g0030 Nicotiana tabacum HOM05D007505 ORTHO05D009476 2.3e-09 66.2 139 40.3
Lj4g0014699 Lotus japonicus HOM05D007505 ORTHO05D009476 4.0e-09 65.5 128 39.8
Haze_07589 Corylus avellana HOM05D007505 ORTHO05D009476 5.2e-09 65.1 145 36.6
PGR083G2149 Punica granatum HOM05D007505 ORTHO05D009476 5.2e-09 65.1 138 35.5
EL10Ac5g10655 Beta vulgaris HOM05D007505 ORTHO05D009476 6.7e-09 64.7 132 37.1
Eucgr.B00218 Eucalyptus grandis HOM05D007505 ORTHO05D009476 8.8e-09 64.3 130 39.2
Rhsim12G0168000 Rhododendron simsii HOM05D007505 ORTHO05D009476 1.2e-08 63.9 120 39.2
HPP92_004606 Vanilla planifolia HOM05D007505 ORTHO05D009476 1.5e-08 63.5 92 45.7
Sc04g0001500 Simmondsia chinensis HOM05D007505 ORTHO05D009476 2.0e-08 63.2 86 45.3
unitig_61.g26472 Utricularia gibba HOM05D007505 ORTHO05D009476 4.4e-08 62.0 120 40.8
Psat4g060840 Pisum sativum HOM05D007505 ORTHO05D009476 5.7e-08 61.6 127 37.8
Sabra12G0061800 Salix brachista HOM05D007505 ORTHO05D009476 5.7e-08 61.6 105 38.1
TPR.G37551 Trifolium pratense HOM05D007505 ORTHO05D009476 5.7e-08 61.6 127 36.2
AUR62008143 Chenopodium quinoa HOM05D007505 ORTHO05D009476 7.5e-08 61.2 142 35.9
AUR62028725 Chenopodium quinoa HOM05D007505 ORTHO05D009476 9.7e-08 60.8 145 35.9
Medtr4g104870 Medicago truncatula HOM05D007505 ORTHO05D009476 9.7e-08 60.8 124 35.5
Nn4g22591 Nelumbo nucifera HOM05D007505 ORTHO05D009476 1.3e-07 60.5 127 37.8
TAR629G2155 Trochodendron aralioides HOM05D001124 ORTHO05D001004 3.7e-07 58.9 106 39.6
ATR0824G199 Amborella trichopoda HOM05D007505 ORTHO05D009476 4.8e-07 58.5 115 37.4
MBI16_g31776_MAGBIO Magnolia biondii HOM05D007505 ORTHO05D009476 2.4e-06 56.2 128 33.6
Dinv20598 Davidia involucrata HOM05D007505 ORTHO05D009476 3.1e-06 55.8 79 40.5


User provided reference genes

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