Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR228720 Cardamine hirsuta HOM05D003074 ORTHO05D002434 3.9e-48 194.9 133 100.0
AL7G31910 Arabidopsis lyrata HOM05D003074 ORTHO05D002434 3.5e-28 128.6 133 79.7
Carub.0007s1942 Capsella rubella HOM05D003074 ORTHO05D002434 8.5e-27 124.0 133 69.9
AT4G21920 Arabidopsis thaliana HOM05D003074 ORTHO05D002434 4.2e-26 121.7 133 75.9
Sp7g20110 Schrenkiella parvula HOM05D003074 ORTHO05D002434 1.2e-20 103.6 133 44.4
Thhalv10026602m.g Eutrema salsugineum HOM05D003074 ORTHO05D002434 2.3e-19 99.4 71 69.0
BcaNung00825 Brassica carinata HOM05D003074 ORTHO05D002434 7.2e-18 94.4 71 62.0
A03p53050 Brassica napus HOM05D003074 ORTHO05D002434 7.2e-18 94.4 71 62.0
C07p51480 Brassica napus HOM05D003074 ORTHO05D002434 7.2e-18 94.4 71 62.0
BolC7t45644H Brassica oleracea HOM05D003074 ORTHO05D002434 7.2e-18 94.4 71 62.0
BraA03t14377Z Brassica rapa HOM05D003074 ORTHO05D002434 7.2e-18 94.4 71 62.0
BcaNung01717 Brassica carinata HOM05D003074 ORTHO05D002434 8.0e-17 90.9 71 60.6
THA.LOC104812967 Tarenaya hassleriana HOM05D003074 ORTHO05D002434 2.0e-15 86.3 132 43.2
Aa31LG6G3910 Aethionema arabicum HOM05D003074 ORTHO05D002434 1.7e-14 83.2 68 64.7
RcHm_v2.0_Chr5g0039411 Rosa chinensis HOM05D003074 ORTHO05D002434 1.2e-09 67.0 66 47.0
FvH4_3g22640 Fragaria vesca HOM05D003074 ORTHO05D002434 2.1e-09 66.2 66 47.0
FAN11G2929 Fragaria x ananassa HOM05D003074 ORTHO05D002434 2.1e-09 66.2 66 47.0
FAN16G0504 Fragaria x ananassa HOM05D003074 ORTHO05D002434 8.0e-09 64.3 66 45.5
FAN25G2410 Fragaria x ananassa HOM05D003074 ORTHO05D002434 8.0e-09 64.3 66 45.5
FvH4_3g02220 Fragaria vesca HOM05D003074 ORTHO05D002434 5.2e-08 61.6 68 44.1
Thecc.06G219600 Theobroma cacao HOM05D003074 ORTHO05D002434 5.2e-08 61.6 67 47.8
Cfa000232 Carpinus fangiana HOM05D003074 ORTHO05D002434 8.9e-08 60.8 67 46.3
FAN01G1682 Fragaria x ananassa HOM05D003074 ORTHO05D002434 8.9e-08 60.8 68 44.1
FAN08G3684 Fragaria x ananassa HOM05D003074 ORTHO05D002434 8.9e-08 60.8 68 44.1
FAN21G2959 Fragaria x ananassa HOM05D003074 ORTHO05D002434 8.9e-08 60.8 67 44.8
FAN25G1645 Fragaria x ananassa HOM05D003074 ORTHO05D002434 8.9e-08 60.8 68 44.1
RcHm_v2.0_Chr5g0003291 Rosa chinensis HOM05D003074 ORTHO05D002434 8.9e-08 60.8 71 43.7
Haze_06793 Corylus avellana HOM05D003074 ORTHO05D002434 1.2e-07 60.5 67 46.3
Manes.16G007700 Manihot esculenta HOM05D003074 ORTHO05D002434 1.2e-07 60.5 67 46.3
FAN26G1625 Fragaria x ananassa HOM05D003074 ORTHO05D002434 2.6e-07 59.3 68 44.1
CiPaw.10G070500 Carya illinoinensis HOM05D003074 ORTHO05D002434 7.5e-07 57.8 67 40.3
Glyma.08G316000 Glycine max HOM05D003074 ORTHO05D002434 7.5e-07 57.8 66 42.4
Gohir.D06G213500 Gossypium hirsutum HOM05D003074 ORTHO05D002434 7.5e-07 57.8 65 47.7
TWI38G1886 Tripterygium wilfordii HOM05D003074 ORTHO05D002434 7.5e-07 57.8 67 41.8
TAR627G0593 Trochodendron aralioides HOM05D003074 ORTHO05D002434 7.5e-07 57.8 64 45.3
CSS0019776 Camellia sinensis var. sinensis HOM05D003074 ORTHO05D002434 9.8e-07 57.4 70 41.4
CsaV3_6G049100 Cucumis sativus L. HOM05D003074 ORTHO05D002434 9.8e-07 57.4 69 42.0
Eucgr.D01318 Eucalyptus grandis HOM05D003074 ORTHO05D002434 9.8e-07 57.4 68 35.3
TPR.G16595 Trifolium pratense HOM05D003074 ORTHO05D002434 9.8e-07 57.4 66 43.9
Atru.chr10.2213 Acer truncatum HOM05D003074 ORTHO05D002434 1.3e-06 57.0 68 44.1
ClCG03G004770 Citrullus lanatus HOM05D003074 ORTHO05D002434 2.2e-06 56.2 68 38.2
Glyma.18G096700 Glycine max HOM05D003074 ORTHO05D002434 2.2e-06 56.2 66 42.4
Prupe.4G212400 Prunus persica HOM05D003074 ORTHO05D002434 2.2e-06 56.2 66 42.4
Manes.03G129100 Manihot esculenta HOM05D003074 ORTHO05D002434 2.9e-06 55.8 63 42.9
Phvul.008G267000 Phaseolus vulgaris HOM05D003074 ORTHO05D002434 2.9e-06 55.8 65 43.1
QL08p010341 Quercus lobata HOM05D003074 ORTHO05D002434 2.9e-06 55.8 65 40.0
Gorai.010G252600 Gossypium raimondii HOM05D003074 ORTHO05D002434 3.7e-06 55.5 65 46.2
Phvul.006G043100 Phaseolus vulgaris HOM05D003074 ORTHO05D002434 3.7e-06 55.5 63 42.9
Sabra16G0289700 Salix brachista HOM05D003074 ORTHO05D002434 3.7e-06 55.5 63 42.9
Medtr3g051610 Medicago truncatula HOM05D003074 ORTHO05D002434 4.9e-06 55.1 66 42.4
Sed0007461 Sechium edule HOM05D003074 ORTHO05D002434 4.9e-06 55.1 66 39.4
CiPaw.11G189000 Carya illinoinensis HOM05D003074 ORTHO05D002434 6.4e-06 54.7 63 39.7
MELO3C007385.2 Cucumis melo HOM05D003074 ORTHO05D002434 6.4e-06 54.7 68 44.1
MELO3C025367.2 Cucumis melo HOM05D003074 ORTHO05D002434 6.4e-06 54.7 66 45.5
DCAR_008152 Daucus carota HOM05D003074 ORTHO05D002434 6.4e-06 54.7 74 39.2
Duzib235G0239 Durio zibethinus HOM05D003074 ORTHO05D002434 6.4e-06 54.7 67 43.3
Medtr3g051510 Medicago truncatula HOM05D003074 ORTHO05D002434 6.4e-06 54.7 66 40.9
Medtr3g051530 Medicago truncatula HOM05D003074 ORTHO05D002434 6.4e-06 54.7 66 40.9
vmacro03644 Vaccinium macrocarpon HOM05D003074 ORTHO05D002434 6.4e-06 54.7 65 40.0
Cpa.g.sc152.6 Carica papaya HOM05D003074 ORTHO05D002434 8.3e-06 54.3 64 45.3
CiPaw.12G129500 Carya illinoinensis HOM05D003074 ORTHO05D002434 8.3e-06 54.3 66 39.4
COL.COLO4_09658 Corchorus olitorius HOM05D003074 ORTHO05D002434 8.3e-06 54.3 75 37.3
Lsat_1_v5_gn_9_93960 Lactuca sativa HOM05D003074 ORTHO05D002434 8.3e-06 54.3 63 42.9
Potri.004G015900 Populus trichocarpa HOM05D003074 ORTHO05D002434 8.3e-06 54.3 67 40.3
Sabra04G0008200 Salix brachista HOM05D003074 ORTHO05D002434 8.3e-06 54.3 67 40.3
TWI38G1232 Tripterygium wilfordii HOM05D003074 ORTHO05D002434 8.3e-06 54.3 68 44.1


User provided reference genes

Program Settings