Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR228690 Cardamine hirsuta HOM05D009543 ORTHO05D004666 9.8e-59 229.9 118 100.0
AT4G21902 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 4.9e-42 174.5 118 76.3
BraA01t01269Z Brassica rapa HOM05D009543 ORTHO05D004666 4.1e-41 171.4 118 75.4
BcaC09g51183 Brassica carinata HOM05D009543 ORTHO05D004666 7.1e-41 170.6 118 75.4
C01p15970 Brassica napus HOM05D009543 ORTHO05D004666 7.1e-41 170.6 118 75.4
BolC1t01557H Brassica oleracea HOM05D009543 ORTHO05D004666 7.1e-41 170.6 118 75.4
Carub.0007s1945 Capsella rubella HOM05D009543 ORTHO05D004666 6.0e-40 167.5 120 75.0
BcaNung02262 Brassica carinata HOM05D009543 ORTHO05D004666 7.8e-40 167.2 118 73.7
Sp7g20070 Schrenkiella parvula HOM05D009543 ORTHO05D004666 9.5e-38 160.2 118 70.3
Thhalv10026583m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 1.8e-36 156.0 119 69.7
AL7G31950 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 1.5e-22 109.8 77 74.0
AT4G04745 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 4.8e-21 104.8 122 52.5
CARHR252810 Cardamine hirsuta HOM05D009543 ORTHO05D004666 1.4e-20 103.2 119 52.1
Thhalv10029169m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 4.0e-20 101.7 121 51.2
AL6G48230 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 6.9e-20 100.9 122 52.5
Sp6g04195 Schrenkiella parvula HOM05D009543 ORTHO05D004666 2.6e-19 99.0 121 49.6
BcaC04g21321 Brassica carinata HOM05D009543 ORTHO05D004666 2.2e-18 95.9 117 47.9
C09p33170 Brassica napus HOM05D009543 ORTHO05D004666 2.2e-18 95.9 117 47.9
BolC9t56151H Brassica oleracea HOM05D009543 ORTHO05D004666 2.2e-18 95.9 117 47.9
A03p30180 Brassica napus HOM05D009543 ORTHO05D004666 2.9e-18 95.5 114 50.0
BraA03t12202Z Brassica rapa HOM05D009543 ORTHO05D004666 2.9e-18 95.5 114 50.0
BcaB01g02575 Brassica carinata HOM05D009543 ORTHO05D004666 3.8e-18 95.1 114 50.0
C03p36430 Brassica napus HOM05D009543 ORTHO05D004666 4.9e-18 94.7 114 50.0
BolC3t15955H Brassica oleracea HOM05D009543 ORTHO05D004666 4.9e-18 94.7 114 50.0
BcaB01g01831 Brassica carinata HOM05D009543 ORTHO05D004666 4.2e-17 91.7 117 46.2
A09p26130 Brassica napus HOM05D009543 ORTHO05D004666 7.1e-17 90.9 120 49.2
BraA09t38180Z Brassica rapa HOM05D009543 ORTHO05D004666 7.1e-17 90.9 120 49.2
Carub.0006s3264 Capsella rubella HOM05D009543 ORTHO05D004666 3.9e-15 85.1 127 46.5
THA.LOC104806304 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 2.8e-13 79.0 119 46.2
TWI38G0534 Tripterygium wilfordii HOM05D005226 ORTHO05D004666 8.4e-10 67.4 105 41.9
Aa31LG6G3890 Aethionema arabicum HOM05D005226 ORTHO05D004666 2.4e-09 65.9 93 46.2
BcaNung04807 Brassica carinata HOM05D005226 ORTHO05D004666 2.4e-09 65.9 124 38.7
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 2.4e-09 65.9 115 40.0
THA.LOC104818840 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 3.2e-09 65.5 123 38.2
A06p08210 Brassica napus HOM05D005226 ORTHO05D004666 4.2e-09 65.1 124 36.3
BolC5t29718H Brassica oleracea HOM05D005226 ORTHO05D004666 4.2e-09 65.1 124 37.9
BraA06t24021Z Brassica rapa HOM05D005226 ORTHO05D004666 4.2e-09 65.1 124 36.3
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 5.5e-09 64.7 118 39.0
Carub.0001s1129 Capsella rubella HOM05D005226 ORTHO05D004666 7.1e-09 64.3 125 39.2
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 1.6e-08 63.2 118 37.3
SGA_v2.0_scaffold4G01918 Striga asiatica HOM05D005226 ORTHO05D004666 1.6e-08 63.2 117 35.0
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 2.1e-08 62.8 113 36.3
BcaC05g25032 Brassica carinata HOM05D005226 ORTHO05D004666 2.1e-08 62.8 124 37.1
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 2.1e-08 62.8 103 39.8
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 2.1e-08 62.8 103 39.8
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 3.5e-08 62.0 75 44.0
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 3.5e-08 62.0 97 38.1
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 4.6e-08 61.6 118 37.3
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 4.6e-08 61.6 120 37.5
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 4.6e-08 61.6 119 37.8
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 6.0e-08 61.2 75 42.7
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 6.0e-08 61.2 97 42.3
Sed0005209 Sechium edule HOM05D005226 ORTHO05D004666 6.0e-08 61.2 116 37.1
C05p09770 Brassica napus HOM05D005226 ORTHO05D004666 7.9e-08 60.8 124 36.3
C08p48100 Brassica napus HOM05D005226 ORTHO05D004666 7.9e-08 60.8 124 35.5
QL05p073519 Quercus lobata HOM05D005226 ORTHO05D004666 7.9e-08 60.8 119 35.3
QL05p073756 Quercus lobata HOM05D005226 ORTHO05D004666 7.9e-08 60.8 119 35.3
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 1.0e-07 60.5 96 36.5
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 1.0e-07 60.5 104 38.5
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 1.3e-07 60.1 120 36.7
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 1.3e-07 60.1 111 37.8
Gohir.D05G172800 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.8e-07 59.7 103 38.8
BcaB03g13244 Brassica carinata HOM05D005226 ORTHO05D004666 3.0e-07 58.9 118 32.2
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 3.0e-07 58.9 78 47.4
BcaB01g01833 Brassica carinata HOM05D009543 ORTHO05D004666 3.9e-07 58.5 71 49.3
A09p64400 Brassica napus HOM05D005226 ORTHO05D004666 3.9e-07 58.5 124 33.9
BraA09t41784Z Brassica rapa HOM05D005226 ORTHO05D004666 3.9e-07 58.5 124 33.9
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 3.9e-07 58.5 75 46.7
BcaB08g37410 Brassica carinata HOM05D005226 ORTHO05D004666 5.1e-07 58.2 124 34.7
BcaC07g41768 Brassica carinata HOM05D005226 ORTHO05D004666 5.1e-07 58.2 100 38.0
CARHR011960 Cardamine hirsuta HOM05D005226 ORTHO05D004666 5.1e-07 58.2 124 37.9
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 5.1e-07 58.2 117 38.5
Duzib160G0401 Durio zibethinus HOM05D005226 ORTHO05D004666 5.1e-07 58.2 103 39.8
Gorai.010G180000 Gossypium raimondii HOM05D005226 ORTHO05D004666 5.1e-07 58.2 98 39.8
RcHm_v2.0_Chr5g0003391 Rosa chinensis HOM05D005226 ORTHO05D004666 5.1e-07 58.2 99 36.4
FAN25G2807 Fragaria x ananassa HOM05D005226 ORTHO05D004666 6.7e-07 57.8 99 35.4
Lalb_Chr15g0087551 Lupinus albus HOM05D005226 ORTHO05D004666 6.7e-07 57.8 75 42.7
CsaV3_6G049110 Cucumis sativus L. HOM05D005226 ORTHO05D004666 8.7e-07 57.4 99 33.3
Oeu051213.1 Olea europaea HOM05D005226 ORTHO05D004666 8.7e-07 57.4 78 38.5
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 8.7e-07 57.4 66 51.5
TAR627G0695 Trochodendron aralioides HOM05D005226 ORTHO05D004666 8.7e-07 57.4 76 43.4
AT1G11655 Arabidopsis thaliana HOM05D005226 ORTHO05D004666 1.1e-06 57.0 124 35.5
FvH4_3g02270 Fragaria vesca HOM05D005226 ORTHO05D004666 1.1e-06 57.0 99 35.4
Gohir.D06G153975 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.1e-06 57.0 98 39.8
Potri.011G002100 Populus trichocarpa HOM05D005226 ORTHO05D004666 1.1e-06 57.0 108 37.0
Sed0027353 Sechium edule HOM05D005226 ORTHO05D004666 1.1e-06 57.0 78 42.3
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 1.1e-06 57.0 80 46.2
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 1.1e-06 57.0 75 42.7
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 1.5e-06 56.6 66 48.5
arahy.Tifrunner.gnm1.ann1.1P1WAU Arachis hypogaea HOM05D005226 ORTHO05D004666 1.5e-06 56.6 66 48.5
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 1.5e-06 56.6 74 43.2
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 1.5e-06 56.6 75 42.7
Nitab4.5_0003254g0050 Nicotiana tabacum HOM05D005226 ORTHO05D004666 1.5e-06 56.6 75 45.3
DCAR_008143 Daucus carota HOM05D005226 ORTHO05D004666 1.9e-06 56.2 73 45.2
Aqoxy1G03603 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 2.5e-06 55.8 76 39.5
AL1G22790 Arabidopsis lyrata HOM05D005226 ORTHO05D004666 2.5e-06 55.8 124 35.5
Cc09_g01800 Coffea canephora HOM05D005226 ORTHO05D004666 2.5e-06 55.8 117 34.2
Eucgr.E04074 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.5e-06 55.8 79 41.8
MD05G1344200 Malus domestica HOM05D005226 ORTHO05D004666 2.5e-06 55.8 99 35.4
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 2.5e-06 55.8 78 43.6
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 2.5e-06 55.8 76 40.8
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 2.5e-06 55.8 104 38.5
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 3.3e-06 55.5 95 34.7
Gohir.A06G148050 Gossypium hirsutum HOM05D005226 ORTHO05D004666 3.3e-06 55.5 98 39.8
Gohir.A10G013400 Gossypium hirsutum HOM05D005226 ORTHO05D004666 3.3e-06 55.5 99 36.4
DCAR_004212 Daucus carota HOM05D005226 ORTHO05D004666 4.3e-06 55.1 73 43.8
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 4.3e-06 55.1 105 37.1
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 4.3e-06 55.1 105 37.1
PGSC0003DMG400004522 Solanum tuberosum HOM05D005226 ORTHO05D004666 4.3e-06 55.1 67 49.3
A08p33360 Brassica napus HOM05D005226 ORTHO05D004666 7.4e-06 54.3 124 31.5
Eucgr.E04072 Eucalyptus grandis HOM05D005226 ORTHO05D004666 7.4e-06 54.3 79 40.5
Peaxi162Scf00565g00021 Petunia axillaris HOM05D005226 ORTHO05D004666 7.4e-06 54.3 74 43.2
Cfa021903 Carpinus fangiana HOM05D005226 ORTHO05D004666 9.6e-06 53.9 76 42.1
Thhalv10009573m.g Eutrema salsugineum HOM05D005226 ORTHO05D004666 9.6e-06 53.9 121 33.1
Glyma.18G063800 Glycine max HOM05D005226 ORTHO05D004666 9.6e-06 53.9 96 36.5


User provided reference genes

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