Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR227780 Cardamine hirsuta HOM05D005881 ORTHO05D007298 4.1e-40 167.5 81 100.0
AT4G21192 Arabidopsis thaliana HOM05D005881 ORTHO05D007298 1.3e-38 162.5 81 95.1
AL3G11760 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 1.7e-38 162.2 81 93.8
Sp7g19280 Schrenkiella parvula HOM05D005881 ORTHO05D007298 1.7e-38 162.2 81 95.1
AL7G32920 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 2.9e-38 161.4 81 93.8
Thhalv10026658m.g Eutrema salsugineum HOM05D005881 ORTHO05D007298 2.9e-38 161.4 81 95.1
BcaC01g00708 Brassica carinata HOM05D005881 ORTHO05D007298 3.8e-38 161.0 81 93.8
BolC3t20627H Brassica oleracea HOM05D005881 ORTHO05D007298 3.8e-38 161.0 81 93.8
BraA08t33500Z Brassica rapa HOM05D005881 ORTHO05D007298 3.8e-38 161.0 81 93.8
Carub.0007s2023 Capsella rubella HOM05D005881 ORTHO05D007298 8.6e-38 159.8 81 93.8
C03p83470 Brassica napus HOM05D005881 ORTHO05D007298 1.1e-37 159.5 81 92.6
BraA03t14343Z Brassica rapa HOM05D005881 ORTHO05D007298 5.5e-37 157.1 81 93.8
A03p52690 Brassica napus HOM05D005881 ORTHO05D007298 1.2e-36 156.0 81 92.6
BcaC06g30655 Brassica carinata HOM05D005881 ORTHO05D007298 1.6e-36 155.6 81 92.6
Aa31LG6G3200 Aethionema arabicum HOM05D005881 ORTHO05D007298 2.1e-36 155.2 81 92.6
BcaNung00865 Brassica carinata HOM05D005881 ORTHO05D007298 2.8e-36 154.8 81 91.4
C07p51120 Brassica napus HOM05D005881 ORTHO05D007298 2.8e-36 154.8 81 91.4
BolC7t45612H Brassica oleracea HOM05D005881 ORTHO05D007298 2.8e-36 154.8 81 91.4
Ciclev10002996m.g Citrus clementina HOM05D005881 ORTHO05D007298 4.9e-33 144.1 79 86.1
Atru.chr6.354 Acer truncatum HOM05D005881 ORTHO05D007298 2.4e-32 141.7 77 84.4
TWI79G0203 Tripterygium wilfordii HOM05D005881 ORTHO05D007298 7.0e-32 140.2 79 81.0
Potri.004G227500 Populus trichocarpa HOM05D005881 ORTHO05D007298 2.0e-31 138.7 75 82.7
THA.LOC104812459 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 2.0e-31 138.7 80 80.0
Duzib052G1237 Durio zibethinus HOM05D005881 ORTHO05D007298 2.7e-31 138.3 79 82.3
Manes.10G110680 Manihot esculenta HOM05D005881 ORTHO05D007298 2.7e-31 138.3 75 81.3
Manes.07G028000 Manihot esculenta HOM05D005881 ORTHO05D007298 3.5e-31 137.9 75 84.0
Gohir.1Z049413 Gossypium hirsutum HOM05D005881 ORTHO05D007298 4.5e-31 137.5 79 82.3
Gohir.1Z049621 Gossypium hirsutum HOM05D005881 ORTHO05D007298 4.5e-31 137.5 79 82.3
Sed0016149 Sechium edule HOM05D005881 ORTHO05D007298 4.5e-31 137.5 75 82.7
Haze_07862 Corylus avellana HOM05D005881 ORTHO05D007298 5.9e-31 137.1 79 77.2
Gohir.D10G000200 Gossypium hirsutum HOM05D005881 ORTHO05D007298 5.9e-31 137.1 79 81.0
Eucgr.K01416 Eucalyptus grandis HOM05D005881 ORTHO05D007298 7.8e-31 136.7 80 82.5
Gorai.002G000700 Gossypium raimondii HOM05D005881 ORTHO05D007298 7.8e-31 136.7 79 82.3
MD17G1268300 Malus domestica HOM05D005881 ORTHO05D007298 7.8e-31 136.7 79 79.7
Prupe.1G582900 Prunus persica HOM05D005881 ORTHO05D007298 7.8e-31 136.7 75 81.3
Gohir.A01G000500 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.0e-30 136.3 80 80.0
Thecc.02G037800 Theobroma cacao HOM05D005881 ORTHO05D007298 1.0e-30 136.3 79 81.0
Sc07g0003630 Simmondsia chinensis HOM05D005881 ORTHO05D007298 1.3e-30 136.0 80 80.0
MD09G1270200 Malus domestica HOM05D005881 ORTHO05D007298 1.7e-30 135.6 79 78.5
QL02p103034 Quercus lobata HOM05D005881 ORTHO05D007298 1.7e-30 135.6 79 75.9
Solyc01g103190.3 Solanum lycopersicum HOM05D005881 ORTHO05D007298 1.7e-30 135.6 79 82.3
Sopen01g045620 Solanum pennellii HOM05D005881 ORTHO05D007298 1.7e-30 135.6 79 82.3
Cfa026039 Carpinus fangiana HOM05D005881 ORTHO05D007298 2.3e-30 135.2 79 75.9
QL02p102397 Quercus lobata HOM05D005881 ORTHO05D007298 2.3e-30 135.2 79 75.9
DCAR_001713 Daucus carota HOM05D005881 ORTHO05D007298 2.9e-30 134.8 75 80.0
Sopen01g045600 Solanum pennellii HOM05D005881 ORTHO05D007298 2.9e-30 134.8 75 82.7
EL10Ac2g04867 Beta vulgaris HOM05D005881 ORTHO05D007298 5.0e-30 134.0 81 77.8
AUR62022918 Chenopodium quinoa HOM05D005881 ORTHO05D007298 5.0e-30 134.0 81 77.8
ClCG10G007340 Citrullus lanatus HOM05D005881 ORTHO05D007298 5.0e-30 134.0 75 78.7
Cc02_g34860 Coffea canephora HOM05D005881 ORTHO05D007298 5.0e-30 134.0 75 82.7
THA.LOC104812941 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 5.0e-30 134.0 77 77.9
Haze_12831 Corylus avellana HOM05D005881 ORTHO05D007298 6.6e-30 133.7 79 75.9
Peaxi162Scf00450g00736 Petunia axillaris HOM05D005881 ORTHO05D007298 6.6e-30 133.7 75 81.3
CANSAT54G2245 Cannabis sativa HOM05D005881 ORTHO05D007298 8.6e-30 133.3 80 78.8
Hma1.2p1_0052F.1_g029890 Hydrangea macrophylla HOM05D005881 ORTHO05D007298 8.6e-30 133.3 75 81.3
Lsat_1_v5_gn_9_121521 Lactuca sativa HOM05D005881 ORTHO05D007298 8.6e-30 133.3 75 80.0
Nitab4.5_0001057g0140 Nicotiana tabacum HOM05D005881 ORTHO05D007298 8.6e-30 133.3 75 80.0
PSO407G0212 Papaver somniferum HOM05D005881 ORTHO05D007298 8.6e-30 133.3 75 80.0
CSS0041173 Camellia sinensis var. sinensis HOM05D005881 ORTHO05D007298 1.1e-29 132.9 75 80.0
CAN.G855.36 Capsicum annuum HOM05D005881 ORTHO05D007298 1.1e-29 132.9 75 80.0
ECA246G1780 Erigeron canadensis HOM05D005881 ORTHO05D007298 1.1e-29 132.9 80 77.5
Oeu010217.3 Olea europaea HOM05D005881 ORTHO05D007298 1.1e-29 132.9 75 80.0
PSO017G1314 Papaver somniferum HOM05D005881 ORTHO05D007298 1.1e-29 132.9 79 79.7
PGR042G2514 Punica granatum HOM05D005881 ORTHO05D007298 1.1e-29 132.9 79 79.7
vmacro19838 Vaccinium macrocarpon HOM05D005881 ORTHO05D007298 1.1e-29 132.9 75 78.7
CiPaw.06G026000 Carya illinoinensis HOM05D005881 ORTHO05D007298 1.5e-29 132.5 75 77.3
SGA_v2.0_scaffold254G45257 Striga asiatica HOM05D005881 ORTHO05D007298 1.5e-29 132.5 75 80.0
Lj6g0001713 Lotus japonicus HOM05D005881 ORTHO05D007298 1.9e-29 132.1 80 73.8
Oeu003780.1 Olea europaea HOM05D005881 ORTHO05D007298 1.9e-29 132.1 75 80.0
arahy.Tifrunner.gnm1.ann1.8HB0N1 Arachis hypogaea HOM05D005881 ORTHO05D007298 2.5e-29 131.7 78 73.1
Lalb_Chr18g0053871 Lupinus albus HOM05D005881 ORTHO05D007298 2.5e-29 131.7 80 72.5
PSO170G3105 Papaver somniferum HOM05D005881 ORTHO05D007298 2.5e-29 131.7 79 78.5
Aqoxy1G00234 Aquilegia oxysepala HOM05D005881 ORTHO05D007298 3.3e-29 131.3 75 77.3
Glyma.18G045400 Glycine max HOM05D005881 ORTHO05D007298 3.3e-29 131.3 80 70.0
Medtr3g064240 Medicago truncatula HOM05D005881 ORTHO05D007298 3.3e-29 131.3 78 74.4
RcHm_v2.0_Chr7g0222581 Rosa chinensis HOM05D005881 ORTHO05D007298 5.6e-29 130.6 79 77.2
Migut.O00861 Erythranthe guttata HOM05D005881 ORTHO05D007298 7.3e-29 130.2 77 76.6
HanXRQChr17g0543881 Helianthus annuus HOM05D005881 ORTHO05D007298 7.3e-29 130.2 80 75.0
A08p15220 Brassica napus HOM05D005881 ORTHO05D007298 9.5e-29 129.8 74 86.5
Glyma.11G208400 Glycine max HOM05D005881 ORTHO05D007298 9.5e-29 129.8 80 68.8
TPR.G37331 Trifolium pratense HOM05D005881 ORTHO05D007298 9.5e-29 129.8 78 74.4
Nn2g11943 Nelumbo nucifera HOM05D005881 ORTHO05D007298 1.2e-28 129.4 80 73.8
CDE08G1319 Ceratophyllum demersum HOM05D005881 ORTHO05D007298 1.6e-28 129.0 75 76.0
Migut.N00857 Erythranthe guttata HOM05D005881 ORTHO05D007298 2.1e-28 128.6 74 78.4
Os02g0560450 Oryza sativa ssp. japonica HOM05D005881 ORTHO05D007298 2.1e-28 128.6 80 76.2
arahy.Tifrunner.gnm1.ann1.6Q1IVA Arachis hypogaea HOM05D005881 ORTHO05D007298 2.8e-28 128.3 75 74.7
arahy.Tifrunner.gnm1.ann1.GZL8T6 Arachis hypogaea HOM05D005881 ORTHO05D007298 2.8e-28 128.3 75 74.7
FvH4_5g29590 Fragaria vesca HOM05D005881 ORTHO05D007298 4.7e-28 127.5 75 74.7
MBI06_g43454_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 4.7e-28 127.5 79 75.9
Ah.00g001370 Amaranthus hybridus HOM05D005881 ORTHO05D007298 8.0e-28 126.7 81 72.8
Gohir.1Z049575 Gossypium hirsutum HOM05D005881 ORTHO05D007298 8.0e-28 126.7 79 78.5
Gorai.002G000900 Gossypium raimondii HOM05D005881 ORTHO05D007298 8.0e-28 126.7 79 78.5
TAR623G1668 Trochodendron aralioides HOM05D005881 ORTHO05D007298 8.0e-28 126.7 75 76.0
Nitab4.5_0002546g0080 Nicotiana tabacum HOM05D005881 ORTHO05D007298 4.0e-27 124.4 89 67.4
arahy.Tifrunner.gnm1.ann1.VTJ29R Arachis hypogaea HOM05D005881 ORTHO05D007298 5.2e-27 124.0 80 70.0
GSVIVG01023198001 Vitis vinifera HOM05D005881 ORTHO05D007298 1.5e-26 122.5 79 73.4
COL.COLO4_17857 Corchorus olitorius HOM05D005881 ORTHO05D007298 1.7e-25 119.0 69 84.1
PGSC0003DMG400024874 Solanum tuberosum HOM05D005881 ORTHO05D007298 6.4e-25 117.1 110 56.4
FAN18G0030 Fragaria x ananassa HOM05D005881 ORTHO05D007298 8.3e-25 116.7 92 60.9
Gohir.1Z049313 Gossypium hirsutum HOM05D005881 ORTHO05D007298 8.3e-25 116.7 79 73.4
Gohir.A01G140426 Gossypium hirsutum HOM05D005881 ORTHO05D007298 3.2e-24 114.8 69 78.3
CsaV3_3G006580 Cucumis sativus L. HOM05D005881 ORTHO05D007298 4.1e-24 114.4 64 78.1
Gohir.1Z049675 Gossypium hirsutum HOM05D005881 ORTHO05D007298 4.1e-24 114.4 61 80.3
Haze_20435 Corylus avellana HOM05D005881 ORTHO05D007298 7.8e-23 110.2 66 74.2
Gohir.1Z049721 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.0e-22 109.8 70 78.6
Gorai.011G000600 Gossypium raimondii HOM05D005881 ORTHO05D007298 1.3e-22 109.4 70 77.1
SGA_v2.0_scaffold131G34400 Striga asiatica HOM05D005881 ORTHO05D007298 3.0e-22 108.2 64 73.4
Cfa026049 Carpinus fangiana HOM05D005881 ORTHO05D007298 3.9e-22 107.8 68 70.6
Nitab4.5_0001057g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 5.0e-22 107.5 62 79.0
Zm00001eb244030 Zea mays HOM05D005881 ORTHO05D007298 5.0e-22 107.5 64 73.4
Cfa021151 Carpinus fangiana HOM05D005881 ORTHO05D007298 1.1e-21 106.3 66 71.2
Rhsim11G0129900 Rhododendron simsii HOM05D005881 ORTHO05D007298 1.9e-21 105.5 62 74.2
C04p26430 Brassica napus HOM05D005881 ORTHO05D007298 2.5e-21 105.1 49 91.8
BolC4t24162H Brassica oleracea HOM05D005881 ORTHO05D007298 2.5e-21 105.1 49 91.8
BcaC02g10665 Brassica carinata HOM05D005881 ORTHO05D007298 5.6e-21 104.0 73 71.2
unitig_22.g6105 Utricularia gibba HOM05D005881 ORTHO05D007298 9.5e-21 103.2 68 69.1
Mapoly0035s0117 Marchantia polymorpha HOM05D005881 ORTHO05D007298 4.7e-20 100.9 74 59.5
Phvul.006G085400 Phaseolus vulgaris HOM05D005881 ORTHO05D007298 4.7e-20 100.9 50 78.0
MBI06_g45555_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 1.8e-19 99.0 65 72.3
Haze_10676 Corylus avellana HOM05D005881 ORTHO05D007298 4.0e-19 97.8 66 69.7
Rhsim06G0200500 Rhododendron simsii HOM05D005881 ORTHO05D007298 3.4e-18 94.7 62 66.1
Haze_09300 Corylus avellana HOM05D005881 ORTHO05D007298 4.4e-18 94.4 66 68.2
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 5.8e-18 94.0 50 78.0
EL10Ac4g07780 Beta vulgaris HOM05D000065 ORTHO05D002939 7.5e-18 93.6 61 68.9
EL10Ac4g07877 Beta vulgaris HOM05D005881 ORTHO05D007298 7.5e-18 93.6 61 68.9
AagrBONN_evm.TU.Sc2ySwM_117.2390 Anthoceros agrestis HOM05D005881 ORTHO05D007298 1.7e-17 92.4 75 54.7
Haze_10008 Corylus avellana HOM05D000045 ORTHO05D001346 8.3e-17 90.1 63 63.5
EL10Ac7g16281 Beta vulgaris HOM05D005881 ORTHO05D007298 1.0e-14 83.2 66 60.6
HPP92_009201 Vanilla planifolia HOM05D005881 ORTHO05D007298 3.9e-14 81.3 53 71.7
MELO3C032219.2 Cucumis melo HOM05D005881 ORTHO05D007298 8.1e-12 73.6 35 80.0
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 2.0e-10 68.9 38 73.7
arahy.Tifrunner.gnm1.ann1.0A1TZX Arachis hypogaea HOM05D001400 ORTHO05D016394 8.3e-09 63.5 36 69.4
MBI06_g35042_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 1.9e-08 62.4 65 46.2
SHI38298 Sapria himalayana HOM05D005881 ORTHO05D000001 3.2e-08 61.6 42 57.1
MCO07G551 Micromonas commoda HOM05D005881 ORTHO05D007298 4.1e-08 61.2 71 38.0
SalBow5G0226 Salvia bowleyana HOM05D005881 ORTHO05D007298 5.4e-08 60.8 38 71.1
Nitab4.5_0001129g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 9.2e-08 60.1 37 78.4


User provided reference genes

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