Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR227240 Cardamine hirsuta HOM05D004415 ORTHO05D005198 9.3e-159 563.5 292 100.0
Thhalv10025893m.g Eutrema salsugineum HOM05D004415 ORTHO05D005198 3.4e-153 545.0 292 95.5
Carub.0007s2075 Capsella rubella HOM05D004415 ORTHO05D005198 9.9e-153 543.5 292 95.5
AT4G20410 Arabidopsis thaliana HOM05D004415 ORTHO05D005198 2.9e-152 542.0 292 95.2
AL7G33480 Arabidopsis lyrata HOM05D004415 ORTHO05D005198 3.8e-152 541.6 292 95.5
Sp7g18770 Schrenkiella parvula HOM05D004415 ORTHO05D005198 3.2e-151 538.5 292 94.2
C01p14410 Brassica napus HOM05D004415 ORTHO05D005198 1.2e-150 536.6 292 94.2
BolC1t01398H Brassica oleracea HOM05D004415 ORTHO05D005198 1.2e-150 536.6 292 94.2
A01p12100 Brassica napus HOM05D004415 ORTHO05D005198 3.0e-149 531.9 292 93.2
BraA01t01153Z Brassica rapa HOM05D004415 ORTHO05D005198 4.3e-148 528.1 292 92.8
Aa31LG6G2800 Aethionema arabicum HOM05D004415 ORTHO05D005198 7.4e-140 500.7 292 88.0
THA.LOC104812930 Tarenaya hassleriana HOM05D004415 ORTHO05D005198 1.8e-130 469.5 294 81.0
SalBow8G0313 Salvia bowleyana HOM05D004415 ORTHO05D005198 3.7e-123 445.3 295 74.9
SalBow8G4844 Salvia bowleyana HOM05D004415 ORTHO05D005198 3.7e-123 445.3 295 74.9
Gohir.A06G202400 Gossypium hirsutum HOM05D004415 ORTHO05D005198 4.8e-123 444.9 295 76.9
Gorai.010G247000 Gossypium raimondii HOM05D004415 ORTHO05D005198 4.8e-123 444.9 295 77.3
Cpa.g.sc173.46 Carica papaya HOM05D004415 ORTHO05D005198 3.1e-122 442.2 294 77.9
Duzib235G0717 Durio zibethinus HOM05D004415 ORTHO05D005198 6.9e-122 441.0 295 75.9
COL.COLO4_22898 Corchorus olitorius HOM05D004415 ORTHO05D005198 9.0e-122 440.7 291 77.0
vmacro03476 Vaccinium macrocarpon HOM05D004415 ORTHO05D005198 1.2e-121 440.3 291 75.6
Thecc.06G005600 Theobroma cacao HOM05D004415 ORTHO05D005198 1.5e-121 439.9 294 76.5
Phvul.009G218500 Phaseolus vulgaris HOM05D004415 ORTHO05D005198 3.4e-121 438.7 296 75.0
CANSAT35G0835 Cannabis sativa HOM05D004415 ORTHO05D005198 1.7e-120 436.4 295 75.9
VMungo1309G0873 Vigna mungo HOM05D004415 ORTHO05D005198 3.8e-120 435.3 294 74.8
Ciclev10016110m.g Citrus clementina HOM05D004415 ORTHO05D005198 6.5e-120 434.5 295 74.9
Manes.16G062800 Manihot esculenta HOM05D004415 ORTHO05D005198 6.5e-120 434.5 294 75.9
GSVIVG01037942001 Vitis vinifera HOM05D004415 ORTHO05D005198 6.5e-120 434.5 296 75.3
Ca_02386_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 1.1e-119 433.7 295 74.9
Rhsim13G0126400 Rhododendron simsii HOM05D004415 ORTHO05D005198 1.4e-119 433.3 291 74.2
arahy.Tifrunner.gnm1.ann1.ZSFV9B Arachis hypogaea HOM05D004415 ORTHO05D005198 4.2e-119 431.8 295 73.9
Potri.001G440600 Populus trichocarpa HOM05D004415 ORTHO05D005198 9.4e-119 430.6 294 74.8
MSTRG.7566 Avicennia marina HOM05D004415 ORTHO05D005198 2.1e-118 429.5 292 72.3
Oeu063146.1 Olea europaea HOM05D004415 ORTHO05D005198 2.7e-118 429.1 294 73.1
Potri.011G155200 Populus trichocarpa HOM05D004415 ORTHO05D005198 2.7e-118 429.1 295 74.9
TWI38G1449 Tripterygium wilfordii HOM05D004415 ORTHO05D005198 6.1e-118 427.9 295 74.2
Atru.chr10.660 Acer truncatum HOM05D004415 ORTHO05D005198 1.4e-117 426.8 293 74.4
Lalb_Chr08g0233111 Lupinus albus HOM05D004415 ORTHO05D005198 1.4e-117 426.8 294 73.5
Medtr2g047110 Medicago truncatula HOM05D004415 ORTHO05D005198 1.8e-117 426.4 295 73.6
Lalb_Chr11g0073471 Lupinus albus HOM05D004415 ORTHO05D005198 6.7e-117 424.5 294 73.8
Sabra16G0300000 Salix brachista HOM05D004415 ORTHO05D005198 6.7e-117 424.5 302 73.2
PGSC0003DMG400021134 Solanum tuberosum HOM05D004415 ORTHO05D005198 8.8e-117 424.1 296 73.0
CiPaw.09G149000 Carya illinoinensis HOM05D004415 ORTHO05D005198 1.1e-116 423.7 294 73.8
MD00G1097300 Malus domestica HOM05D004415 ORTHO05D005198 1.1e-116 423.7 294 71.8
Sabra16G0298000 Salix brachista HOM05D004415 ORTHO05D005198 1.5e-116 423.3 302 73.2
Dinv03287 Davidia involucrata HOM05D004415 ORTHO05D005198 2.0e-116 422.9 298 73.2
Lj1A1155G52 Lonicera japonica HOM05D004415 ORTHO05D005198 2.6e-116 422.5 294 73.5
TAR627G0414 Trochodendron aralioides HOM05D004415 ORTHO05D005198 2.6e-116 422.5 295 72.9
TAR627G1150 Trochodendron aralioides HOM05D004415 ORTHO05D005198 2.6e-116 422.5 295 72.9
Cfa000755 Carpinus fangiana HOM05D004415 ORTHO05D005198 3.3e-116 422.2 294 74.5
Nn7g37839 Nelumbo nucifera HOM05D004415 ORTHO05D005198 4.3e-116 421.8 294 71.8
FvH4_3g11520 Fragaria vesca HOM05D004415 ORTHO05D005198 5.7e-116 421.4 294 71.4
Hma1.2p1_0008F-2.1_g005810 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 5.7e-116 421.4 295 73.6
Actinidia29247 Actinidia chinensis HOM05D004415 ORTHO05D005198 7.4e-116 421.0 291 73.2
arahy.Tifrunner.gnm1.ann1.UW0JAL Arachis hypogaea HOM05D004415 ORTHO05D005198 9.7e-116 420.6 295 72.5
Migut.M01938 Erythranthe guttata HOM05D004415 ORTHO05D005198 9.7e-116 420.6 295 70.8
Prupe.4G102500 Prunus persica HOM05D004415 ORTHO05D005198 9.7e-116 420.6 293 73.4
Sopen02g018770 Solanum pennellii HOM05D004415 ORTHO05D005198 9.7e-116 420.6 296 72.3
PGR083G0443 Punica granatum HOM05D004415 ORTHO05D005198 1.3e-115 420.2 295 72.9
Solyc02g069640.3 Solanum lycopersicum HOM05D004415 ORTHO05D005198 1.3e-115 420.2 296 72.0
RcHm_v2.0_Chr5g0018471 Rosa chinensis HOM05D004415 ORTHO05D005198 2.2e-115 419.5 294 71.4
SGA_v2.0_scaffold298G47634 Striga asiatica HOM05D004415 ORTHO05D005198 4.8e-115 418.3 295 71.2
Ah.01g002800 Amaranthus hybridus HOM05D004415 ORTHO05D005198 1.1e-114 417.2 292 72.6
MSTRG.16315 Avicennia marina HOM05D004415 ORTHO05D005198 2.4e-114 416.0 295 70.5
Sc17g0004090 Simmondsia chinensis HOM05D004415 ORTHO05D005198 2.4e-114 416.0 294 72.4
Glyma.15G191200 Glycine max HOM05D004415 ORTHO05D005198 1.2e-113 413.7 295 71.2
Hund01093 Selenicereus undatus HOM05D004415 ORTHO05D005198 4.5e-113 411.8 294 71.4
ECA236G1935 Erigeron canadensis HOM05D004415 ORTHO05D005198 7.7e-113 411.0 292 70.9
CSS0002194 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 1.3e-112 410.2 295 70.2
Glyma.09G083100 Glycine max HOM05D004415 ORTHO05D005198 1.7e-112 409.8 292 70.9
FAN21G2450 Fragaria x ananassa HOM05D004415 ORTHO05D005198 3.8e-112 408.7 312 66.7
Peaxi162Scf00195g00616 Petunia axillaris HOM05D004415 ORTHO05D005198 3.8e-112 408.7 296 70.3
Sabra11G0144600 Salix brachista HOM05D004415 ORTHO05D005198 3.8e-112 408.7 289 73.7
ClCG01G008890 Citrullus lanatus HOM05D004415 ORTHO05D005198 5.0e-112 408.3 295 70.5
Gorai.009G116300 Gossypium raimondii HOM05D004415 ORTHO05D005198 8.5e-112 407.5 292 70.5
FAN16G2189 Fragaria x ananassa HOM05D004415 ORTHO05D005198 1.1e-111 407.1 312 66.3
CSS0048897 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 1.4e-111 406.8 295 69.5
CsaV3_1G037760 Cucumis sativus L. HOM05D004415 ORTHO05D005198 1.4e-111 406.8 295 70.5
CDE03G0179 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 1.9e-111 406.4 295 68.8
FAN25G0769 Fragaria x ananassa HOM05D004415 ORTHO05D005198 3.2e-111 405.6 311 66.6
TPR.G22904 Trifolium pratense HOM05D004415 ORTHO05D005198 5.5e-111 404.8 289 70.9
Nitab4.5_0007613g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 7.2e-111 404.4 296 70.6
Nitab4.5_0010415g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 1.2e-110 403.7 296 70.3
CDE06G2804 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 1.6e-110 403.3 295 68.5
Psat1g018760 Pisum sativum HOM05D004415 ORTHO05D005198 1.6e-110 403.3 295 70.5
Aqoxy4G00050 Aquilegia oxysepala HOM05D004415 ORTHO05D005198 2.7e-110 402.5 292 70.2
QL05p063115 Quercus lobata HOM05D004415 ORTHO05D005198 2.7e-110 402.5 339 63.4
AUR62025006 Chenopodium quinoa HOM05D004415 ORTHO05D005198 1.4e-109 400.2 295 70.2
ATR1098G142 Amborella trichopoda HOM05D004415 ORTHO05D005198 3.0e-109 399.1 289 69.6
PSO541G2694 Papaver somniferum HOM05D004415 ORTHO05D005198 3.0e-109 399.1 296 69.9
HPP92_013188 Vanilla planifolia HOM05D004415 ORTHO05D005198 3.9e-109 398.7 292 69.9
CSS0010489 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 5.2e-109 398.3 282 70.6
Ca_17811_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 5.2e-109 398.3 297 68.0
Gohir.D06G219300 Gossypium hirsutum HOM05D004415 ORTHO05D005198 5.2e-109 398.3 248 80.2
Medtr8g089250 Medicago truncatula HOM05D004415 ORTHO05D005198 6.7e-109 397.9 295 68.8
PSO675G6508 Papaver somniferum HOM05D004415 ORTHO05D005198 6.7e-109 397.9 296 69.3
unitig_37.g12064 Utricularia gibba HOM05D004415 ORTHO05D005198 6.7e-109 397.9 295 68.1
Sed0021762 Sechium edule HOM05D004415 ORTHO05D005198 8.8e-109 397.5 296 69.3
AUR62006530 Chenopodium quinoa HOM05D004415 ORTHO05D005198 1.1e-108 397.1 295 69.5
Os04g0618500 Oryza sativa ssp. japonica HOM05D004415 ORTHO05D005198 1.5e-108 396.7 295 67.8
Lalb_Chr07g0185681 Lupinus albus HOM05D004415 ORTHO05D005198 2.6e-108 396.0 282 70.9
Eucgr.D01029 Eucalyptus grandis HOM05D004415 ORTHO05D005198 1.3e-107 393.7 267 74.2
Sed0009944 Sechium edule HOM05D004415 ORTHO05D005198 2.8e-107 392.5 277 72.9
CAN.G954.7 Capsicum annuum HOM05D004415 ORTHO05D005198 4.8e-107 391.7 288 70.1
TPR.G6264 Trifolium pratense HOM05D004415 ORTHO05D005198 6.3e-107 391.3 297 66.7
arahy.Tifrunner.gnm1.ann1.5MZ6ZS Arachis hypogaea HOM05D004415 ORTHO05D005198 1.4e-106 390.2 294 68.0
arahy.Tifrunner.gnm1.ann1.Z0R64B Arachis hypogaea HOM05D004415 ORTHO05D005198 5.3e-106 388.3 294 68.0
EL10Ac9g22486 Beta vulgaris HOM05D004415 ORTHO05D005198 2.2e-104 382.9 284 67.6
Lsat_1_v5_gn_7_31101 Lactuca sativa HOM05D004415 ORTHO05D005198 4.2e-103 378.6 293 67.2
Gohir.D05G112100 Gossypium hirsutum HOM05D004415 ORTHO05D005198 8.8e-101 370.9 317 61.8
Haze_05963 Corylus avellana HOM05D004415 ORTHO05D005198 2.7e-89 332.8 294 62.9
AagrBONN_evm.TU.Sc2ySwM_368.1346 Anthoceros agrestis HOM05D004415 ORTHO05D005198 2.2e-88 329.7 287 56.4
Hma1.2p1_0008F-2.1_g005800 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 1.5e-87 327.0 216 75.0
Lj6g0004921 Lotus japonicus HOM05D004415 ORTHO05D005198 1.0e-85 320.9 294 58.5
HanXRQChr04g0119541 Helianthus annuus HOM05D004415 ORTHO05D005198 2.3e-85 319.7 222 72.5
Cc09_g04060 Coffea canephora HOM05D004415 ORTHO05D005198 1.2e-84 317.4 221 71.9
Mapoly0008s0129 Marchantia polymorpha HOM05D004415 ORTHO05D005198 1.2e-84 317.4 290 54.5
Zm00001eb431060 Zea mays HOM05D004415 ORTHO05D005198 3.4e-84 315.8 216 71.3
AagrBONN_evm.TU.Sc2ySwM_362.579 Anthoceros agrestis HOM05D004415 ORTHO05D005198 1.1e-82 310.8 287 55.7
Pp3c19_23300 Physcomitrium patens HOM05D004415 ORTHO05D005198 5.4e-82 308.5 288 55.2
arahy.Tifrunner.gnm1.ann1.QWIY8B Arachis hypogaea HOM05D004415 ORTHO05D005198 1.2e-81 307.4 279 60.2
AagrBONN_evm.TU.Sc2ySwM_368.3355 Anthoceros agrestis HOM05D004415 ORTHO05D005198 2.7e-81 306.2 287 55.1
MELO3C021810.2 Cucumis melo HOM05D004415 ORTHO05D005198 2.7e-81 306.2 223 70.0
SMO228G0081 Selaginella moellendorffii HOM05D004415 ORTHO05D005198 7.7e-81 304.7 262 58.8
CBR_g24190 Chara braunii HOM05D004415 ORTHO05D005198 4.0e-77 292.4 292 54.5
Zm00001eb410240 Zea mays HOM05D004415 ORTHO05D005198 3.5e-73 279.3 214 64.5
CDE03G0221 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 5.9e-73 278.5 270 56.7
Duzib043G0003 Durio zibethinus HOM05D004415 ORTHO05D005198 1.5e-68 263.8 176 75.0
CBR_g48904 Chara braunii HOM05D004415 ORTHO05D005198 4.9e-67 258.8 255 54.1
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 9.2e-66 254.6 252 56.7
arahy.Tifrunner.gnm1.ann1.6K3MVX Arachis hypogaea HOM05D004415 ORTHO05D005198 2.0e-60 236.9 223 58.3
Gohir.A05G111501 Gossypium hirsutum HOM05D004415 ORTHO05D005198 9.2e-58 228.0 202 58.4
MBI02_g43828_MAGBIO Magnolia biondii HOM05D004415 ORTHO05D005198 2.1e-57 226.9 150 76.0
SEGI_29507 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 2.0e-52 210.3 159 64.8
Zm00001eb072080 Zea mays HOM05D004415 ORTHO05D005198 3.2e-50 203.0 143 65.0
arahy.Tifrunner.gnm1.ann1.W2C20P Arachis hypogaea HOM05D004415 ORTHO05D005198 1.6e-49 200.7 149 68.5
TAR627G0753 Trochodendron aralioides HOM05D004415 ORTHO05D005198 1.1e-45 188.0 135 68.9
MCO11G422 Micromonas commoda HOM05D004415 ORTHO05D005198 9.9e-44 181.4 281 36.3
Oeu063144.1 Olea europaea HOM05D004415 ORTHO05D005198 8.7e-40 168.3 181 53.6
arahy.Tifrunner.gnm1.ann1.NJ63RV Arachis hypogaea HOM05D004415 ORTHO05D005198 3.4e-36 156.4 151 55.6
VMungo0464G1344 Vigna mungo HOM05D004415 ORTHO05D005198 2.4e-34 150.2 105 71.4
PRCOL_00005341 Prasinoderma coloniale HOM05D004415 ORTHO05D005198 1.6e-33 147.5 300 34.0
SEGI_22365 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 6.9e-29 132.1 106 67.0
Zm00001eb266710 Zea mays HOM05D004415 ORTHO05D005198 1.5e-28 131.0 99 61.6
arahy.Tifrunner.gnm1.ann1.YAAB6X Arachis hypogaea HOM05D004415 ORTHO05D005198 1.2e-25 121.3 106 61.3
Cre08.g385700 Chlamydomonas reinhardtii HOM05D004415 ORTHO05D005198 1.0e-19 101.7 273 25.6
arahy.Tifrunner.gnm1.ann1.479FYN Arachis hypogaea HOM05D004415 ORTHO05D005198 6.5e-19 99.0 116 50.9
Cc09_g04070 Coffea canephora HOM05D004415 ORTHO05D005198 8.4e-19 98.6 66 77.3
SGA_v2.0_scaffold298G47629 Striga asiatica HOM05D004415 ORTHO05D005198 1.6e-17 94.4 128 45.3
BcaB03g15995 Brassica carinata HOM05D004415 ORTHO05D005198 6.0e-17 92.4 91 59.3
FvH4_3g11480 Fragaria vesca HOM05D004415 ORTHO05D005198 6.7e-16 89.0 81 55.6
arahy.Tifrunner.gnm1.ann1.LII2ER Arachis hypogaea HOM05D004415 ORTHO05D005198 3.4e-12 76.6 113 42.5
arahy.Tifrunner.gnm1.ann1.8SCZ96 Arachis hypogaea HOM05D004415 ORTHO05D005198 1.3e-11 74.7 113 41.6
VMungo0331G0484 Vigna mungo HOM05D003730 ORTHO05D005198 1.5e-07 61.2 44 63.6
HanXRQChr04g0119531 Helianthus annuus HOM05D004415 ORTHO05D005198 2.5e-07 60.5 37 70.3
GSVIVG01003362001 Vitis vinifera HOM05D004415 ORTHO05D005198 3.3e-07 60.1 51 56.9
VMungo0251G3417 Vigna mungo HOM05D004415 ORTHO05D005198 2.2e-06 57.4 32 78.1


User provided reference genes

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