Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR227170 Cardamine hirsuta HOM05D003201 ORTHO05D008805 5.9e-146 520.8 250 100.0
AL7G33540 Arabidopsis lyrata HOM05D003201 ORTHO05D008805 1.3e-116 423.3 245 86.5
Carub.0007s2082 Capsella rubella HOM05D003201 ORTHO05D008805 3.7e-116 421.8 245 86.5
Thhalv10026088m.g Eutrema salsugineum HOM05D003201 ORTHO05D008805 5.9e-114 414.5 251 85.3
Sp7g18690 Schrenkiella parvula HOM05D003201 ORTHO05D008805 7.8e-114 414.1 251 84.1
C01p14340 Brassica napus HOM05D003201 ORTHO05D008914 6.8e-110 401.0 254 80.3
BraA01t01146Z Brassica rapa HOM05D003201 ORTHO05D008914 4.4e-109 398.3 250 81.6
Aa31LG6G2740 Aethionema arabicum HOM05D003201 ORTHO05D008914 1.1e-107 393.7 260 77.7
A01p12040 Brassica napus HOM05D003201 ORTHO05D008914 3.2e-107 392.1 250 80.0
BolC1t01393H Brassica oleracea HOM05D000280 ORTHO05D004510 5.6e-104 381.3 249 77.9
THA.LOC104806236 Tarenaya hassleriana HOM05D003201 ORTHO05D008805 6.0e-98 361.3 263 71.9
BcaC09g51346 Brassica carinata HOM05D003201 ORTHO05D008805 1.5e-93 346.7 218 82.1
AT4G20350 Arabidopsis thaliana HOM05D003201 ORTHO05D008805 4.0e-86 322.0 192 83.3
Glyma.16G207100 Glycine max HOM05D003201 ORTHO05D008805 1.9e-80 303.1 268 59.0
TWI34G1882 Tripterygium wilfordii HOM05D003201 ORTHO05D008805 4.3e-80 302.0 260 59.2
VMungo0464G1483 Vigna mungo HOM05D003201 ORTHO05D008805 7.3e-80 301.2 264 58.7
Lj2g0011105 Lotus japonicus HOM05D003201 ORTHO05D008805 2.1e-79 299.7 267 56.2
QL04p043008 Quercus lobata HOM05D003201 ORTHO05D008805 3.6e-79 298.9 266 57.5
Thecc.05G124600 Theobroma cacao HOM05D003201 ORTHO05D008805 6.2e-79 298.1 263 60.1
CANSAT35G1729 Cannabis sativa HOM05D003201 ORTHO05D008805 1.4e-78 297.0 247 60.3
Medtr6g059320 Medicago truncatula HOM05D003201 ORTHO05D008805 2.4e-78 296.2 259 57.9
GSVIVG01034815001 Vitis vinifera HOM05D003201 ORTHO05D008805 2.4e-78 296.2 267 59.2
Psat1g112800 Pisum sativum HOM05D003201 ORTHO05D008805 4.0e-78 295.4 263 58.2
MELO3C024592.2 Cucumis melo HOM05D003201 ORTHO05D008805 6.9e-78 294.7 253 58.5
CAN.G431.2 Capsicum annuum HOM05D003201 ORTHO05D008805 9.0e-78 294.3 262 58.8
Prupe.6G000300 Prunus persica HOM05D003201 ORTHO05D008805 1.2e-77 293.9 267 56.6
Cfa002302 Carpinus fangiana HOM05D003201 ORTHO05D008805 1.5e-77 293.5 259 58.3
HanXRQChr17g0555621 Helianthus annuus HOM05D003201 ORTHO05D008805 1.5e-77 293.5 252 58.7
ClCG01G015060 Citrullus lanatus HOM05D003201 ORTHO05D008805 2.0e-77 293.1 252 59.1
Gohir.D09G114700 Gossypium hirsutum HOM05D003201 ORTHO05D008805 7.6e-77 291.2 263 58.6
Lalb_Chr01g0008671 Lupinus albus HOM05D003201 ORTHO05D008805 7.6e-77 291.2 264 59.1
ECA248G3933 Erigeron canadensis HOM05D003201 ORTHO05D008805 1.7e-76 290.0 256 57.8
FvH4_3g46100 Fragaria vesca HOM05D003201 ORTHO05D008805 1.7e-76 290.0 271 58.7
Phvul.004G131600 Phaseolus vulgaris HOM05D003201 ORTHO05D008805 1.7e-76 290.0 264 57.2
TPR.G5800 Trifolium pratense HOM05D003201 ORTHO05D008805 2.2e-76 289.7 263 57.0
Glyma.09G156400 Glycine max HOM05D003201 ORTHO05D008805 2.9e-76 289.3 268 57.8
Gohir.A09G117900 Gossypium hirsutum HOM05D003201 ORTHO05D008805 4.9e-76 288.5 262 58.4
CSS0031904 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008805 8.4e-76 287.7 270 57.8
CsaV3_6G041170 Cucumis sativus L. HOM05D003201 ORTHO05D008805 8.4e-76 287.7 253 58.1
Aqoxy5G03624 Aquilegia oxysepala HOM05D003201 ORTHO05D008805 1.9e-75 286.6 268 56.3
MD11G1000200 Malus domestica HOM05D003201 ORTHO05D008805 5.4e-75 285.0 272 55.9
RcHm_v2.0_Chr5g0084171 Rosa chinensis HOM05D003201 ORTHO05D008805 5.4e-75 285.0 272 57.0
PSO339G6265 Papaver somniferum HOM05D003201 ORTHO05D008805 9.3e-75 284.3 268 54.9
Cc01_g05060 Coffea canephora HOM05D003201 ORTHO05D008805 1.2e-74 283.9 266 55.6
PSO384G0221 Papaver somniferum HOM05D003201 ORTHO05D008805 1.3e-73 280.4 268 55.2
Sabra13G0129200 Salix brachista HOM05D003201 ORTHO05D008805 1.3e-73 280.4 265 57.0
ATR0068G091 Amborella trichopoda HOM05D003201 ORTHO05D008805 2.3e-73 279.6 258 54.7
DCAR_028397 Daucus carota HOM05D003201 ORTHO05D008805 6.7e-73 278.1 263 54.8
Dinv15525 Davidia involucrata HOM05D003201 ORTHO05D008805 6.7e-73 278.1 271 56.5
AUR62000916 Chenopodium quinoa HOM05D003201 ORTHO05D008805 1.1e-72 277.3 265 57.4
Sopen01g022430 Solanum pennellii HOM05D003201 ORTHO05D008805 1.5e-72 276.9 262 54.2
TAR623G0449 Trochodendron aralioides HOM05D003201 ORTHO05D008805 1.9e-72 276.6 270 56.7
Potri.013G161600 Populus trichocarpa HOM05D003201 ORTHO05D008805 2.5e-72 276.2 265 56.6
Peaxi162Scf01181g00210 Petunia axillaris HOM05D003201 ORTHO05D008805 3.3e-72 275.8 271 54.6
Solyc01g057570.3 Solanum lycopersicum HOM05D003201 ORTHO05D008805 4.3e-72 275.4 263 54.8
CDE02G2127 Ceratophyllum demersum HOM05D003201 ORTHO05D008805 1.4e-70 270.4 274 51.5
Actinidia16221 Actinidia chinensis HOM05D003201 ORTHO05D008805 1.8e-70 270.0 267 54.7
arahy.Tifrunner.gnm1.ann1.75P5EB Arachis hypogaea HOM05D003201 ORTHO05D008805 3.1e-70 269.2 216 62.5
Migut.N00525 Erythranthe guttata HOM05D003201 ORTHO05D008805 4.0e-70 268.9 252 56.0
Sc18g0002730 Simmondsia chinensis HOM05D003201 ORTHO05D008805 4.0e-70 268.9 218 63.3
MBI13_g39202_MAGBIO Magnolia biondii HOM05D003201 ORTHO05D008805 9.0e-70 267.7 276 54.7
Hma1.2p1_1133F.1_g260360 Hydrangea macrophylla HOM05D003201 ORTHO05D008805 1.5e-69 266.9 268 53.7
Hma1.2p1_1133F.1_g260370 Hydrangea macrophylla HOM05D003201 ORTHO05D008805 1.5e-69 266.9 268 53.7
MSTRG.12815 Avicennia marina HOM05D003201 ORTHO05D008805 3.4e-69 265.8 262 55.3
vmacro04280 Vaccinium macrocarpon HOM05D003201 ORTHO05D008805 9.9e-69 264.2 285 53.0
CiPaw.03G255400 Carya illinoinensis HOM05D003201 ORTHO05D008805 3.8e-68 262.3 225 61.8
HPP92_021155 Vanilla planifolia HOM05D003201 ORTHO05D008805 3.8e-68 262.3 259 55.6
Zm00001eb047810 Zea mays HOM05D003201 ORTHO05D008805 1.9e-67 260.0 273 51.3
EL10Ac4g09260 Beta vulgaris HOM05D003201 ORTHO05D008805 3.5e-66 255.8 301 48.5
arahy.Tifrunner.gnm1.ann1.F1EX5J Arachis hypogaea HOM05D003201 ORTHO05D008805 7.9e-66 254.6 236 57.2
PGR119G1272 Punica granatum HOM05D003201 ORTHO05D008805 7.9e-66 254.6 263 54.8
unitig_0.g1143 Utricularia gibba HOM05D003201 ORTHO05D008805 1.0e-65 254.2 246 53.7
Sopen01g019970 Solanum pennellii HOM05D003201 ORTHO05D008805 2.5e-64 249.6 262 51.1
SGA_v2.0_scaffold6G03334 Striga asiatica HOM05D003201 ORTHO05D008805 8.1e-63 244.6 272 50.7
Ciclev10029320m.g Citrus clementina HOM05D003201 ORTHO05D008805 3.1e-62 242.7 188 62.8
Eucgr.J01718 Eucalyptus grandis HOM05D003201 ORTHO05D008805 9.0e-62 241.1 231 56.3
Gorai.006G132500 Gossypium raimondii HOM05D003201 ORTHO05D008805 1.2e-61 240.7 188 64.9
Atru.chr2.209 Acer truncatum HOM05D003201 ORTHO05D008805 2.0e-61 240.0 184 63.0
Sed0008662 Sechium edule HOM05D003201 ORTHO05D008805 2.6e-61 239.6 251 51.8
SMO147G0005 Selaginella moellendorffii HOM05D003201 ORTHO05D008805 1.7e-60 236.9 247 50.6
Os10g0420000 Oryza sativa ssp. japonica HOM05D003201 ORTHO05D008805 2.2e-60 236.5 262 50.0
Pp3c2_18510 Physcomitrium patens HOM05D003201 ORTHO05D008805 8.4e-60 234.6 257 47.9
SEGI_31075 Sequoiadendron giganteum HOM05D003201 ORTHO05D008805 1.2e-58 230.7 278 46.8
Lsat_1_v5_gn_1_71340 Lactuca sativa HOM05D003201 ORTHO05D008805 3.5e-58 229.2 197 58.4
Mapoly0007s0017 Marchantia polymorpha HOM05D003201 ORTHO05D008805 1.9e-56 223.4 255 46.3
SMO132G0004 Selaginella moellendorffii HOM05D003201 ORTHO05D008805 3.3e-56 222.6 262 46.9
AUR62004843 Chenopodium quinoa HOM05D003201 ORTHO05D008805 1.7e-52 210.3 135 71.1
FAN11G2508 Fragaria x ananassa HOM05D003201 ORTHO05D008805 1.3e-49 200.7 202 57.9
Nitab4.5_0000075g0050 Nicotiana tabacum HOM05D003201 ORTHO05D008805 6.7e-49 198.4 276 44.6
Haze_24508 Corylus avellana HOM05D003201 ORTHO05D008805 1.5e-48 197.2 198 55.6
AUR62005054 Chenopodium quinoa HOM05D003201 ORTHO05D008805 1.2e-45 187.6 202 53.5
Duzib093G2193 Durio zibethinus HOM05D003201 ORTHO05D008805 4.5e-45 185.7 263 43.7
FAN16G0934 Fragaria x ananassa HOM05D000104 ORTHO05D004363 1.1e-43 181.0 249 45.0
FAN25G0659 Fragaria x ananassa HOM05D003201 ORTHO05D008805 1.9e-43 180.3 194 55.2
Manes.18G121700 Manihot esculenta HOM05D003201 ORTHO05D008805 3.2e-43 179.5 196 53.6
Cpa.g.sc30.50 Carica papaya HOM05D003201 ORTHO05D008805 2.6e-40 169.9 184 54.9
Rhsim13G0235500 Rhododendron simsii HOM05D003201 ORTHO05D008805 5.0e-36 155.6 296 36.5
SalBow3G4219 Salvia bowleyana HOM05D003201 ORTHO05D008805 9.4e-35 151.4 135 60.7
MCO03G055 Micromonas commoda HOM05D003201 ORTHO05D008805 2.1e-34 150.2 250 38.4
Ca_25246_v3 Cicer arietinum L. HOM05D003201 ORTHO05D008805 3.0e-33 146.4 151 52.3
MBI13_g36948_MAGBIO Magnolia biondii HOM05D003201 ORTHO05D008805 7.4e-32 141.7 158 53.2
FAN21G2623 Fragaria x ananassa HOM05D003201 ORTHO05D008805 3.7e-31 139.4 165 52.1
COL.COLO4_24749 Corchorus olitorius HOM05D003201 ORTHO05D008805 5.9e-29 132.1 263 35.7
PGSC0003DMG400026601 Solanum tuberosum HOM05D003201 ORTHO05D008805 7.7e-29 131.7 156 48.7
Lj1A555G38 Lonicera japonica HOM05D003201 ORTHO05D008805 1.0e-28 131.3 166 47.0
Nitab4.5_0005125g0010 Nicotiana tabacum HOM05D003201 ORTHO05D008805 1.0e-28 131.3 135 55.6
CBR_g45550 Chara braunii HOM05D000019 ORTHO05D000353 8.5e-28 128.3 105 53.3
Hund07019 Selenicereus undatus HOM05D003201 ORTHO05D008805 1.6e-26 124.0 160 49.4
Cre14.g632791 Chlamydomonas reinhardtii HOM05D003201 ORTHO05D008805 1.9e-19 100.5 174 35.1
MCO08G131 Micromonas commoda HOM05D003201 ORTHO05D008805 4.2e-19 99.4 194 35.6
FAN11G4037 Fragaria x ananassa HOM05D003201 ORTHO05D008805 7.2e-19 98.6 70 62.9
FAN25G1903 Fragaria x ananassa HOM05D003201 ORTHO05D008805 5.2e-17 92.4 71 60.6
Cfa026017 Carpinus fangiana HOM05D003201 ORTHO05D124792 7.5e-16 88.6 193 33.2
PRCOL_00004726 Prasinoderma coloniale HOM05D003201 ORTHO05D008805 2.9e-12 76.6 190 30.0
BcaC07g37753 Brassica carinata HOM05D007105 ORTHO05D009304 7.0e-06 55.5 244 25.4
BolC8t48138H Brassica oleracea HOM05D007105 ORTHO05D009304 7.0e-06 55.5 244 25.4


User provided reference genes

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