Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR226870 Cardamine hirsuta HOM05D004959 ORTHO05D005961 0.0e+00 2226.1 1134 100.0
AL7G33790 Arabidopsis lyrata HOM05D004959 ORTHO05D005961 0.0e+00 1824.7 1138 81.5
AT4G20060 Arabidopsis thaliana HOM05D004959 ORTHO05D005961 0.0e+00 1822.4 1138 80.9
Carub.0007s2107 Capsella rubella HOM05D004959 ORTHO05D005961 0.0e+00 1783.1 1138 79.4
Thhalv10024260m.g Eutrema salsugineum HOM05D004959 ORTHO05D005961 0.0e+00 1734.2 1145 78.3
BolC1t01373H Brassica oleracea HOM05D004959 ORTHO05D005961 0.0e+00 1726.1 1133 78.5
BraA01t01128Z Brassica rapa HOM05D004959 ORTHO05D005961 0.0e+00 1724.5 1140 78.0
C01p14060 Brassica napus HOM05D004959 ORTHO05D005961 0.0e+00 1713.0 1136 78.3
Sp7g18520 Schrenkiella parvula HOM05D004959 ORTHO05D005961 0.0e+00 1713.0 1142 77.1
BcaNung06192 Brassica carinata HOM05D004959 ORTHO05D005961 0.0e+00 1702.2 1140 77.6
A01p11860 Brassica napus HOM05D004959 ORTHO05D005961 0.0e+00 1638.2 1140 74.9
Aa31LG6G2470 Aethionema arabicum HOM05D004959 ORTHO05D005961 0.0e+00 1430.2 1145 66.4
Cpa.g.sc30.122 Carica papaya HOM05D004959 ORTHO05D005961 5.9e-262 908.3 1146 44.2
GSVIVG01032944001 Vitis vinifera HOM05D004959 ORTHO05D005961 1.4e-247 860.5 1159 43.0
Cfa000659 Carpinus fangiana HOM05D004959 ORTHO05D005961 5.6e-244 848.6 1160 43.3
QL04p014466 Quercus lobata HOM05D004959 ORTHO05D005961 2.4e-239 833.2 1173 42.5
QL04p014830 Quercus lobata HOM05D004959 ORTHO05D005961 4.1e-239 832.4 1173 42.5
Thecc.02G004800 Theobroma cacao HOM05D004959 ORTHO05D005961 4.0e-234 815.8 1162 41.5
Dinv06304 Davidia involucrata HOM05D004959 ORTHO05D005961 9.3e-231 804.7 1176 41.6
Dinv04263 Davidia involucrata HOM05D004959 ORTHO05D005961 1.1e-228 797.7 1177 41.9
TWI63G1138 Tripterygium wilfordii HOM05D004959 ORTHO05D005961 9.9e-225 784.6 1165 40.8
Manes.16G050600 Manihot esculenta HOM05D004959 ORTHO05D005961 1.2e-222 777.7 1167 40.0
Potri.018G118800 Populus trichocarpa HOM05D004959 ORTHO05D005961 1.1e-218 764.6 1178 39.9
Sabra18G0102400 Salix brachista HOM05D004959 ORTHO05D005961 5.8e-217 758.8 1180 39.3
COL.COLO4_18025 Corchorus olitorius HOM05D004959 ORTHO05D005961 4.9e-216 755.7 1158 39.4
Prupe.3G104300 Prunus persica HOM05D004959 ORTHO05D005961 1.6e-214 750.7 1169 39.3
Hma1.2p1_0137F.1_g062550 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 2.8e-211 740.0 1171 40.1
Actinidia07601 Actinidia chinensis HOM05D004959 ORTHO05D005961 5.8e-209 732.3 1173 38.6
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 8.4e-208 728.4 1159 38.5
Gohir.D12G047700 Gossypium hirsutum HOM05D004959 ORTHO05D005961 2.1e-206 723.8 1161 37.8
CsaV3_5G015760 Cucumis sativus L. HOM05D004959 ORTHO05D005961 2.5e-204 716.8 1170 37.6
Gohir.A12G049000 Gossypium hirsutum HOM05D004959 ORTHO05D005961 2.2e-203 713.8 1193 36.9
Sed0018634 Sechium edule HOM05D004959 ORTHO05D005961 9.0e-202 708.4 1160 37.4
MD13G1224700 Malus domestica HOM05D004959 ORTHO05D005961 2.6e-201 706.8 1143 38.4
Gorai.008G050400 Gossypium raimondii HOM05D004959 ORTHO05D005961 4.5e-201 706.1 1193 36.7
Rhsim02G0134800 Rhododendron simsii HOM05D004959 ORTHO05D005961 2.2e-200 703.7 1157 37.6
Rhsim01G0101500 Rhododendron simsii HOM05D004959 ORTHO05D005961 3.8e-200 703.0 1177 37.9
FvH4_4g05080 Fragaria vesca HOM05D004959 ORTHO05D005961 1.1e-199 701.4 1145 37.9
vmacro15931 Vaccinium macrocarpon HOM05D004959 ORTHO05D005961 1.0e-197 694.9 1185 36.7
RcHm_v2.0_Chr4g0396011 Rosa chinensis HOM05D004959 ORTHO05D005961 8.8e-197 691.8 1148 37.5
FAN12G3376 Fragaria x ananassa HOM05D004959 ORTHO05D005961 7.4e-196 688.7 1151 37.4
MELO3C026444.2 Cucumis melo HOM05D004959 ORTHO05D005961 5.3e-194 682.6 1167 37.2
Eucgr.I01567 Eucalyptus grandis HOM05D004959 ORTHO05D005961 6.5e-192 675.6 1155 37.2
Duzib248G0683 Durio zibethinus HOM05D004959 ORTHO05D005961 8.2e-187 658.7 1092 37.5
CiPaw.10G061900 Carya illinoinensis HOM05D004959 ORTHO05D005961 1.8e-186 657.5 973 41.1
FAN22G0965 Fragaria x ananassa HOM05D004959 ORTHO05D005961 1.8e-186 657.5 1147 36.6
Phvul.004G026300 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 5.9e-185 652.5 1157 36.7
Glyma.19G032700 Glycine max HOM05D004959 ORTHO05D005961 6.5e-184 649.0 1156 37.2
VMungo0464G0163 Vigna mungo HOM05D004959 ORTHO05D005961 6.5e-184 649.0 1154 37.6
Haze_06165 Corylus avellana HOM05D004959 ORTHO05D005961 5.5e-183 646.0 1100 38.4
PGR142G3977 Punica granatum HOM05D004959 ORTHO05D005961 1.2e-182 644.8 1160 35.3
CANSAT25G2352 Cannabis sativa HOM05D004959 ORTHO05D005961 3.6e-182 643.3 1147 35.9
Nn3g21093 Nelumbo nucifera HOM05D004959 ORTHO05D005961 8.8e-181 638.6 1173 36.4
Lj3A850G96 Lonicera japonica HOM05D004959 ORTHO05D005961 1.5e-180 637.9 1181 36.8
FAN17G1136 Fragaria x ananassa HOM05D004959 ORTHO05D005961 4.4e-180 636.3 1142 36.5
HanXRQChr12g0366411 Helianthus annuus HOM05D004959 ORTHO05D005961 2.4e-178 630.6 1154 36.0
Sopen02g014720 Solanum pennellii HOM05D004959 ORTHO05D005961 3.6e-174 616.7 1174 34.8
MBI07_g42017_MAGBIO Magnolia biondii HOM05D004959 ORTHO05D005961 5.2e-173 612.8 1258 33.9
PGSC0003DMG400003329 Solanum tuberosum HOM05D004959 ORTHO05D005961 2.0e-172 610.9 1176 34.9
Solyc02g064590.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 2.6e-172 610.5 1172 34.4
Solyc02g064620.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 2.6e-172 610.5 1172 34.4
Aqoxy5G03195 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 6.3e-171 605.9 1172 34.5
Atru.chr8.666 Acer truncatum HOM05D004959 ORTHO05D005961 3.5e-169 600.1 949 40.3
Aqoxy3G03508 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 4.5e-169 599.7 1172 34.0
PSO017G0156 Papaver somniferum HOM05D004959 ORTHO05D005961 5.9e-169 599.4 1173 34.5
ECA233G2209 Erigeron canadensis HOM05D004959 ORTHO05D005961 3.2e-167 593.6 1153 34.1
PSO478G1937 Papaver somniferum HOM05D004959 ORTHO05D005961 3.6e-166 590.1 1164 33.9
Nitab4.5_0000036g0080 Nicotiana tabacum HOM05D004959 ORTHO05D005961 3.0e-165 587.0 1170 33.6
MD16G1229900 Malus domestica HOM05D004959 ORTHO05D005961 5.2e-165 586.3 1050 36.4
Lsat_1_v5_gn_8_33541 Lactuca sativa HOM05D004959 ORTHO05D005961 7.5e-164 582.4 1139 35.2
Nitab4.5_0010326g0010 Nicotiana tabacum HOM05D004959 ORTHO05D005961 1.1e-162 578.6 1146 33.4
TAR622G1187 Trochodendron aralioides HOM05D004959 ORTHO05D005961 1.8e-162 577.8 999 37.7
Cc04_g10880 Coffea canephora HOM05D004959 ORTHO05D005961 3.5e-161 573.5 1178 34.7
Sc10g0002790 Simmondsia chinensis HOM05D004959 ORTHO05D005961 1.0e-160 572.0 1164 33.0
Migut.E00705 Erythranthe guttata HOM05D004959 ORTHO05D005961 3.8e-160 570.1 1174 34.2
EL10Ac2g04300 Beta vulgaris HOM05D004959 ORTHO05D005961 1.5e-156 558.1 1167 32.6
Oeu021359.1 Olea europaea HOM05D004959 ORTHO05D005961 1.8e-154 551.2 1173 32.2
DCAR_026905 Daucus carota HOM05D004959 ORTHO05D005961 3.8e-152 543.5 1176 33.5
AUR62022971 Chenopodium quinoa HOM05D004959 ORTHO05D005961 1.1e-151 542.0 1172 32.2
AUR62012329 Chenopodium quinoa HOM05D004959 ORTHO05D005961 9.5e-151 538.9 1166 32.6
Ciclev10014195m.g Citrus clementina HOM05D004959 ORTHO05D005961 3.6e-150 537.0 911 37.5
HanXRQChr04g0121291 Helianthus annuus HOM05D004959 ORTHO05D005961 1.8e-149 534.6 1103 33.5
Migut.E00612 Erythranthe guttata HOM05D004959 ORTHO05D005961 1.5e-148 531.6 1181 32.5
ATR0037G053 Amborella trichopoda HOM05D004959 ORTHO05D005961 7.5e-148 529.3 1210 32.8
HPP92_024644 Vanilla planifolia HOM05D004959 ORTHO05D005961 6.8e-141 506.1 1216 31.5
Ah.09g226960 Amaranthus hybridus HOM05D004959 ORTHO05D005961 4.1e-138 496.9 1166 31.0
SGA_v2.0_scaffold36G14263 Striga asiatica HOM05D004959 ORTHO05D005961 6.6e-136 489.6 1149 31.9
BcaB03g11657 Brassica carinata HOM05D004959 ORTHO05D005961 7.3e-135 486.1 364 72.3
Glyma.13G054500 Glycine max HOM05D004959 ORTHO05D005961 2.4e-130 471.1 939 34.3
SGA_v2.0_scaffold99G29470 Striga asiatica HOM05D004959 ORTHO05D005961 3.6e-126 457.2 1142 31.9
CSS0032692 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 6.8e-125 453.0 903 33.9
Aqoxy7G01840 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 9.9e-124 449.1 975 31.9
SEGI_31831 Sequoiadendron giganteum HOM05D004959 ORTHO05D005961 1.6e-121 441.8 1265 28.8
Hma1.2p1_0286F.1_g114200 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 2.5e-111 407.9 664 40.2
SHI28141 Sapria himalayana HOM05D004959 ORTHO05D005961 3.1e-109 401.0 893 32.0
Zm00001eb126950 Zea mays HOM05D004959 ORTHO05D005961 6.2e-102 376.7 1233 26.0
Peaxi162Scf00449g00320 Petunia axillaris HOM05D004959 ORTHO05D005961 4.3e-95 354.0 896 29.6
LjContig00564g0005645 Lotus japonicus HOM05D004959 ORTHO05D005961 5.3e-77 293.9 310 51.6
Pp3c21_2460 Physcomitrium patens HOM05D004959 ORTHO05D005961 2.0e-76 292.0 1271 25.6
Psat7g167160 Pisum sativum HOM05D004959 ORTHO05D005961 1.3e-75 289.3 329 49.5
LjContig00564g0002415 Lotus japonicus HOM05D004959 ORTHO05D005961 8.5e-75 286.6 310 50.6
Medtr4g078330 Medicago truncatula HOM05D004959 ORTHO05D005961 5.5e-74 283.9 309 50.5
BcaNung06193 Brassica carinata HOM05D004959 ORTHO05D005961 4.7e-73 280.8 187 77.5
Ca_18944_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 4.7e-73 280.8 309 50.5
PSO161G0046 Papaver somniferum HOM05D004959 ORTHO05D005961 6.1e-73 280.4 798 29.3
Lalb_Chr19g0135221 Lupinus albus HOM05D004959 ORTHO05D005961 7.9e-73 280.0 323 46.4
CAN.G370.71 Capsicum annuum HOM05D004959 ORTHO05D005961 3.7e-70 271.2 427 39.1
Lj3g0004583 Lotus japonicus HOM05D004959 ORTHO05D005961 2.7e-65 255.0 310 47.4
Oeu021362.1 Olea europaea HOM05D004959 ORTHO05D005961 6.1e-57 227.3 432 34.0
arahy.Tifrunner.gnm1.ann1.WXF40H Arachis hypogaea HOM05D004959 ORTHO05D005961 1.8e-53 215.7 304 41.4
Peaxi162Scf00449g00321 Petunia axillaris HOM05D004959 ORTHO05D005961 3.1e-53 214.9 270 46.7
CDE04G0396 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 1.0e-51 209.9 237 47.7
arahy.Tifrunner.gnm1.ann1.C6XSUD Arachis hypogaea HOM05D004959 ORTHO05D005961 2.2e-51 208.8 304 40.8
Atru.chr8.667 Acer truncatum HOM05D004959 ORTHO05D005961 3.8e-51 208.0 175 57.7
CSS0018526 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 2.7e-49 201.8 244 43.4
Mapoly0306s0002 Marchantia polymorpha HOM05D004959 ORTHO05D005961 2.3e-48 198.7 1118 22.4
CDE04G1301 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 1.4e-45 189.5 418 33.7
unitig_46.g18488 Utricularia gibba HOM05D004959 ORTHO05D005961 3.1e-45 188.3 283 41.0
BcaB03g11656 Brassica carinata HOM05D004959 ORTHO05D005961 1.7e-43 182.6 133 73.7
SHI28139 Sapria himalayana HOM05D004959 ORTHO05D005961 1.5e-42 179.5 175 50.3
PSO478G4754 Papaver somniferum HOM05D004959 ORTHO05D005961 7.2e-42 177.2 203 47.3
LjContig00564g0005363 Lotus japonicus HOM05D004959 ORTHO05D005961 1.6e-41 176.0 177 54.8
Phvul.005G124450 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 2.3e-40 172.2 175 53.7
SMO111G0127 Selaginella moellendorffii HOM05D004959 ORTHO05D005961 1.3e-38 166.4 1004 21.8
BcaC01g00655 Brassica carinata HOM05D004959 ORTHO05D005961 3.5e-36 158.3 128 71.1
TPR.G23000 Trifolium pratense HOM05D004959 ORTHO05D005961 3.6e-33 148.3 168 50.0
Phvul.005G124501 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 4.9e-30 137.9 302 32.1
Psat2g088000 Pisum sativum HOM05D004959 ORTHO05D005961 6.4e-30 137.5 131 51.9
BolC3t20557H Brassica oleracea HOM05D000005 ORTHO05D000449 1.4e-29 136.3 79 86.1
C03p82750 Brassica napus HOM05D000005 ORTHO05D000449 3.2e-29 135.2 78 87.2
Os01g0188200 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 1.3e-27 129.8 247 32.8
BcaC01g00652 Brassica carinata HOM05D004959 ORTHO05D005961 4.7e-25 121.3 189 42.9
Phvul.005G124551 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 4.7e-25 121.3 314 30.3
Aqoxy5G03191 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 2.0e-23 115.9 495 26.1
CDE04G2317 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 9.2e-21 107.1 422 25.6
CBR_g16049 Chara braunii HOM05D004959 ORTHO05D005961 2.7e-20 105.5 361 24.7
Atru.chr10.384 Acer truncatum HOM05D004959 ORTHO05D005961 1.5e-18 99.8 227 31.3
TPR.G940 Trifolium pratense HOM05D004959 ORTHO05D005961 1.6e-17 96.3 98 52.0
C03p82740 Brassica napus HOM05D050026 ORTHO05D041081 3.1e-16 92.0 499 25.5
BolC3t20554H Brassica oleracea HOM05D004959 ORTHO05D005961 3.1e-16 92.0 98 51.0
C03p82730 Brassica napus HOM05D004959 ORTHO05D005961 1.3e-14 86.7 97 49.5
BolC3t20556H Brassica oleracea HOM05D050026 ORTHO05D041081 1.3e-14 86.7 186 36.0
Ca_14573_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 2.4e-13 82.4 111 42.3
Ca_14572_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 1.2e-12 80.1 116 41.4
Aqoxy5G03189 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 1.1e-10 73.6 211 27.0
Ca_14567_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 2.5e-10 72.4 99 45.5
AagrBONN_evm.TU.Sc2ySwM_228.5373 Anthoceros agrestis HOM05D004959 ORTHO05D005961 2.8e-09 68.9 477 22.6
SHI28140 Sapria himalayana HOM05D004959 ORTHO05D005961 1.1e-08 67.0 65 52.3
BolC3t20555H Brassica oleracea HOM05D004959 ORTHO05D005961 4.4e-07 61.6 50 62.0


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