Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR226750 Cardamine hirsuta HOM05D008198 ORTHO05D010220 3.9e-66 254.6 125 100.0
Thhalv10026564m.g Eutrema salsugineum HOM05D008198 ORTHO05D010220 4.4e-49 198.0 128 78.9
Carub.0007s2117 Capsella rubella HOM05D008198 ORTHO05D010220 8.2e-48 193.7 129 81.4
AL7G33930 Arabidopsis lyrata HOM05D008198 ORTHO05D010220 1.4e-47 193.0 127 79.5
AT4G19980 Arabidopsis thaliana HOM05D008198 ORTHO05D010220 7.0e-47 190.7 128 78.1
BcaNung01739 Brassica carinata HOM05D008198 ORTHO05D010220 2.0e-46 189.1 127 78.0
Sp7g18430 Schrenkiella parvula HOM05D008198 ORTHO05D010220 2.0e-46 189.1 127 78.0
A01p11780 Brassica napus HOM05D008198 ORTHO05D010220 7.7e-46 187.2 127 77.2
BraA01t01120Z Brassica rapa HOM05D008198 ORTHO05D010220 7.7e-46 187.2 127 77.2
C01p13980 Brassica napus HOM05D008198 ORTHO05D010220 1.6e-43 179.5 127 74.8
BolC1t01365H Brassica oleracea HOM05D008198 ORTHO05D010220 1.6e-43 179.5 127 74.8
BcaC09g51355 Brassica carinata HOM05D008198 ORTHO05D010220 2.7e-43 178.7 127 74.8
C03p82100 Brassica napus HOM05D008198 ORTHO05D010220 2.8e-32 142.1 127 64.6
BolC3t20547H Brassica oleracea HOM05D008198 ORTHO05D010220 2.8e-32 142.1 127 64.6
Aa31LG6G2390 Aethionema arabicum HOM05D008198 ORTHO05D010220 1.2e-19 100.1 117 57.3
RcHm_v2.0_Chr5g0020591 Rosa chinensis HOM05D008198 ORTHO05D010220 7.5e-17 90.9 103 51.5
Thecc.02G006400 Theobroma cacao HOM05D008198 ORTHO05D010220 2.9e-16 89.0 82 54.9
Duzib248G0575 Durio zibethinus HOM05D008198 ORTHO05D010220 8.3e-16 87.4 76 56.6
FAN21G2662 Fragaria x ananassa HOM05D008198 ORTHO05D010220 8.3e-16 87.4 89 51.7
Sabra03G0076400 Salix brachista HOM05D008198 ORTHO05D010220 4.1e-15 85.1 76 57.9
CiPaw.09G074800 Carya illinoinensis HOM05D008198 ORTHO05D010220 5.4e-15 84.7 107 48.6
VMungo0251G3138 Vigna mungo HOM05D008198 ORTHO05D010220 2.1e-14 82.8 93 52.7
ClCG01G025660 Citrullus lanatus HOM05D008198 ORTHO05D010220 2.7e-14 82.4 96 46.9
Ciclev10017172m.g Citrus clementina HOM05D008198 ORTHO05D010220 2.7e-14 82.4 102 50.0
Prupe.4G115000 Prunus persica HOM05D008198 ORTHO05D010220 2.7e-14 82.4 91 51.6
Atru.chr10.441 Acer truncatum HOM05D008198 ORTHO05D010220 3.5e-14 82.0 71 56.3
Potri.001G123300 Populus trichocarpa HOM05D008198 ORTHO05D010220 3.5e-14 82.0 96 49.0
QL11p013556 Quercus lobata HOM05D008198 ORTHO05D010220 6.0e-14 81.3 71 56.3
Glyma.05G131701 Glycine max HOM05D008198 ORTHO05D010220 1.0e-13 80.5 99 51.5
Gorai.005G268000 Gossypium raimondii HOM05D008198 ORTHO05D010220 1.0e-13 80.5 109 41.3
MD05G1249200 Malus domestica HOM05D008198 ORTHO05D010220 1.0e-13 80.5 81 51.9
CSS0019680 Camellia sinensis var. sinensis HOM05D008198 ORTHO05D010220 1.7e-13 79.7 68 60.3
COL.COLO4_17639 Corchorus olitorius HOM05D008198 ORTHO05D010220 1.7e-13 79.7 117 41.0
Gohir.D02G239700 Gossypium hirsutum HOM05D008198 ORTHO05D010220 1.7e-13 79.7 101 42.6
Manes.03G073400 Manihot esculenta HOM05D008198 ORTHO05D010220 1.7e-13 79.7 111 43.2
Gohir.A03G217600 Gossypium hirsutum HOM05D008198 ORTHO05D010220 2.3e-13 79.3 92 45.7
FvH4_3g12620 Fragaria vesca HOM05D008198 ORTHO05D010220 3.0e-13 79.0 71 57.7
FAN25G2935 Fragaria x ananassa HOM05D008198 ORTHO05D010220 3.0e-13 79.0 71 57.7
Sabra01G0095000 Salix brachista HOM05D008198 ORTHO05D010220 3.0e-13 79.0 93 49.5
TPR.G11001 Trifolium pratense HOM05D008198 ORTHO05D010220 5.1e-13 78.2 94 53.2
Haze_06107 Corylus avellana HOM05D008198 ORTHO05D010220 6.6e-13 77.8 83 50.6
Lj4g0024937 Lotus japonicus HOM05D008198 ORTHO05D010220 1.5e-12 76.6 77 53.2
Phvul.002G191200 Phaseolus vulgaris HOM05D008198 ORTHO05D010220 3.3e-12 75.5 77 53.2
MD10G1229700 Malus domestica HOM05D008198 ORTHO05D010220 4.3e-12 75.1 103 44.7
Medtr4g094640 Medicago truncatula HOM05D008198 ORTHO05D010220 4.3e-12 75.1 77 55.8
TWI38G1073 Tripterygium wilfordii HOM05D008198 ORTHO05D010220 4.3e-12 75.1 78 53.8
Cfa000688 Carpinus fangiana HOM05D008198 ORTHO05D010220 7.3e-12 74.3 84 51.2
Dinv09067 Davidia involucrata HOM05D008198 ORTHO05D010220 9.5e-12 73.9 92 46.7
Nn7g38206 Nelumbo nucifera HOM05D008198 ORTHO05D010220 9.5e-12 73.9 77 50.6
Actinidia22419 Actinidia chinensis HOM05D008198 ORTHO05D010220 1.2e-11 73.6 66 60.6
Ca_18253_v3 Cicer arietinum L. HOM05D008198 ORTHO05D010220 1.6e-11 73.2 99 45.5
Potri.003G110200 Populus trichocarpa HOM05D008198 ORTHO05D010220 1.6e-11 73.2 94 46.8
CiPaw.10G063000 Carya illinoinensis HOM05D008198 ORTHO05D010220 2.1e-11 72.8 107 46.7
SalBow8G3784 Salvia bowleyana HOM05D008198 ORTHO05D010220 2.8e-11 72.4 63 57.1
Lalb_Chr07g0188441 Lupinus albus HOM05D008198 ORTHO05D010220 6.2e-11 71.2 77 50.6
Eucgr.L01648 Eucalyptus grandis HOM05D008198 ORTHO05D010220 1.1e-10 70.5 68 55.9
Psat7g089000 Pisum sativum HOM05D008198 ORTHO05D010220 1.8e-10 69.7 95 48.4
Sed0017835 Sechium edule HOM05D008198 ORTHO05D010220 3.1e-10 68.9 97 41.2
Glyma.08G086200 Glycine max HOM05D008198 ORTHO05D010220 5.2e-10 68.2 90 53.3
Oeu058939.1 Olea europaea HOM05D008198 ORTHO05D010220 9.9e-09 63.9 76 47.4
PGSC0003DMG400010446 Solanum tuberosum HOM05D008198 ORTHO05D010220 2.9e-08 62.4 91 48.4
Sopen02g017700 Solanum pennellii HOM05D008198 ORTHO05D010220 8.3e-08 60.8 77 49.4
Lalb_Chr04g0257791 Lupinus albus HOM05D008198 ORTHO05D010220 5.4e-07 58.2 45 62.2
Os06g0666800 Oryza sativa ssp. japonica HOM05D019633 ORTHO05D010220 2.1e-06 56.2 85 36.5
SGA_v2.0_scaffold298G47697 Striga asiatica HOM05D008198 ORTHO05D010220 2.1e-06 56.2 70 48.6
Migut.M01995 Erythranthe guttata HOM05D008198 ORTHO05D010220 4.6e-06 55.1 73 42.5
Cpa.g.sc30.141 Carica papaya HOM05D008198 ORTHO05D010220 6.0e-06 54.7 82 39.0
Zm00001eb233120 Zea mays HOM05D019633 ORTHO05D010220 7.8e-06 54.3 81 48.1


User provided reference genes

Program Settings