Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR226070 Cardamine hirsuta HOM05D006577 ORTHO05D008428 1.2e-277 959.5 596 100.0
AT4G19190 Arabidopsis thaliana HOM05D006577 ORTHO05D008428 3.6e-210 735.3 598 77.8
Sp7g17900 Schrenkiella parvula HOM05D006577 ORTHO05D008428 4.7e-210 734.9 598 79.8
BraA01t01062Z Brassica rapa HOM05D006577 ORTHO05D008428 1.8e-209 733.0 555 79.1
A01p11160 Brassica napus HOM05D006577 ORTHO05D008428 1.3e-207 726.9 555 78.9
C01p13200 Brassica napus HOM05D006577 ORTHO05D008428 1.2e-202 710.3 555 77.1
Carub.0007s2195 Capsella rubella HOM05D006577 ORTHO05D008428 6.2e-202 708.0 599 77.5
AL7G34890 Arabidopsis lyrata HOM05D006577 ORTHO05D008428 4.4e-200 701.8 475 83.8
BolC1t01294H Brassica oleracea HOM05D006577 ORTHO05D008428 6.4e-199 698.0 555 76.8
BcaC09g51429 Brassica carinata HOM05D006577 ORTHO05D008428 2.8e-194 682.6 556 75.4
Thhalv10024821m.g Eutrema salsugineum HOM05D006577 ORTHO05D008428 1.9e-187 659.8 450 81.8
Aa31LG6G1900 Aethionema arabicum HOM05D006577 ORTHO05D008428 7.0e-153 545.0 556 64.4
THA.LOC104806196 Tarenaya hassleriana HOM05D006577 ORTHO05D008428 4.1e-137 492.7 518 62.2
BcaC09g51430 Brassica carinata HOM05D006577 ORTHO05D008428 2.3e-132 476.9 264 89.0
CiPaw.11G075200 Carya illinoinensis HOM05D006577 ORTHO05D008428 7.5e-131 471.9 320 74.7
CANSAT35G0698 Cannabis sativa HOM05D006577 ORTHO05D008428 2.2e-130 470.3 322 74.8
Eucgr.D02560 Eucalyptus grandis HOM05D006577 ORTHO05D008428 1.6e-128 464.2 320 71.2
Thecc.03G318900 Theobroma cacao HOM05D006577 ORTHO05D008428 2.0e-128 463.8 322 72.4
Manes.17G000100 Manihot esculenta HOM05D006577 ORTHO05D008428 1.0e-127 461.5 397 62.2
GSVIVG01036870001 Vitis vinifera HOM05D006577 ORTHO05D008428 6.6e-127 458.8 320 73.1
CSS0014058 Camellia sinensis var. sinensis HOM05D006577 ORTHO05D008428 1.9e-126 457.2 316 73.1
Peaxi162Scf00193g00730 Petunia axillaris HOM05D006577 ORTHO05D008428 1.9e-126 457.2 314 73.6
Gohir.A08G149500 Gossypium hirsutum HOM05D006577 ORTHO05D008428 2.5e-126 456.8 324 71.9
Gorai.004G178000 Gossypium raimondii HOM05D006577 ORTHO05D008428 2.5e-126 456.8 324 71.6
Gohir.D08G170500 Gossypium hirsutum HOM05D006577 ORTHO05D008428 3.3e-126 456.4 325 71.4
PGR042G0863 Punica granatum HOM05D006577 ORTHO05D008428 5.5e-126 455.7 322 71.4
CAN.G1026.7 Capsicum annuum HOM05D006577 ORTHO05D008428 9.5e-126 454.9 314 73.9
Cc08_g05650 Coffea canephora HOM05D006577 ORTHO05D008428 9.5e-126 454.9 322 73.3
Lalb_Chr16g0380351 Lupinus albus HOM05D006577 ORTHO05D008428 9.5e-126 454.9 314 73.6
Nitab4.5_0007095g0010 Nicotiana tabacum HOM05D006577 ORTHO05D008428 2.1e-125 453.8 323 72.1
arahy.Tifrunner.gnm1.ann1.0U4NMV Arachis hypogaea HOM05D006577 ORTHO05D008428 2.8e-125 453.4 413 61.7
arahy.Tifrunner.gnm1.ann1.Y0J304 Arachis hypogaea HOM05D006577 ORTHO05D008428 2.8e-125 453.4 413 61.7
TWI73G0063 Tripterygium wilfordii HOM05D006577 ORTHO05D008428 2.8e-125 453.4 319 72.1
MELO3C010522.2 Cucumis melo HOM05D006577 ORTHO05D008428 1.4e-124 451.1 316 72.5
MD08G1001400 Malus domestica HOM05D006577 ORTHO05D008428 2.3e-124 450.3 414 63.3
Dinv41806 Davidia involucrata HOM05D006577 ORTHO05D008428 4.0e-124 449.5 323 72.1
Rhsim11G0036700 Rhododendron simsii HOM05D006577 ORTHO05D008428 4.0e-124 449.5 316 71.8
Cfa012291 Carpinus fangiana HOM05D000435 ORTHO05D000430 5.2e-124 449.1 308 74.0
Sopen08g024050 Solanum pennellii HOM05D006577 ORTHO05D008428 6.8e-124 448.7 317 72.2
CsaV3_4G027910 Cucumis sativus L. HOM05D006577 ORTHO05D008428 8.9e-124 448.4 320 70.9
COL.COLO4_11282 Corchorus olitorius HOM05D006577 ORTHO05D008428 1.2e-123 448.0 323 70.9
TAR629G1131 Trochodendron aralioides HOM05D006577 ORTHO05D008428 1.5e-123 447.6 320 70.3
Actinidia32789 Actinidia chinensis HOM05D006577 ORTHO05D008428 2.0e-123 447.2 315 71.7
Ca_13135_v3 Cicer arietinum L. HOM05D006577 ORTHO05D008428 2.0e-123 447.2 320 70.9
Migut.E01373 Erythranthe guttata HOM05D006577 ORTHO05D008428 3.4e-123 446.4 317 73.2
Medtr2g040410 Medicago truncatula HOM05D006577 ORTHO05D008428 3.4e-123 446.4 316 72.2
Prupe.1G353400 Prunus persica HOM05D006577 ORTHO05D008428 4.4e-123 446.0 401 61.6
Solyc08g075420.4 Solanum lycopersicum HOM05D006577 ORTHO05D008428 4.4e-123 446.0 314 72.6
ECA233G0973 Erigeron canadensis HOM05D006577 ORTHO05D008428 7.5e-123 445.3 320 70.0
Lj2g0006155 Lotus japonicus HOM05D006577 ORTHO05D008428 7.5e-123 445.3 320 70.6
TPR.G29075 Trifolium pratense HOM05D006577 ORTHO05D008428 9.8e-123 444.9 316 72.5
FvH4_2g37380 Fragaria vesca HOM05D006577 ORTHO05D008428 1.7e-122 444.1 413 67.1
Haze_08434 Corylus avellana HOM05D006577 ORTHO05D008428 2.8e-122 443.4 338 68.3
DCAR_030906 Daucus carota HOM05D006577 ORTHO05D008428 1.1e-121 441.4 316 69.9
Psat1g131640 Pisum sativum HOM05D006577 ORTHO05D008428 1.1e-121 441.4 321 70.7
Aqoxy7G00896 Aquilegia oxysepala HOM05D006577 ORTHO05D008428 1.8e-121 440.7 323 69.3
vmacro00091 Vaccinium macrocarpon HOM05D006577 ORTHO05D008428 1.8e-121 440.7 316 71.2
Glyma.01G154300 Glycine max HOM05D006577 ORTHO05D008428 3.2e-121 439.9 319 70.5
Cpa.g.sc90.36 Carica papaya HOM05D006577 ORTHO05D008428 5.4e-121 439.1 449 58.6
Lsat_1_v5_gn_6_17281 Lactuca sativa HOM05D006577 ORTHO05D008428 5.4e-121 439.1 316 70.9
Glyma.11G090300 Glycine max HOM05D006577 ORTHO05D008428 2.0e-120 437.2 319 70.5
VMungo1215G3406 Vigna mungo HOM05D006577 ORTHO05D008428 4.5e-120 436.0 318 70.4
Atru.chr8.2629 Acer truncatum HOM05D006577 ORTHO05D008428 5.9e-120 435.6 321 68.2
FAN21G2299 Fragaria x ananassa HOM05D006577 ORTHO05D008428 1.3e-119 434.5 418 64.6
Oeu046783.1 Olea europaea HOM05D006577 ORTHO05D008428 1.3e-119 434.5 321 69.8
Nn7g37388 Nelumbo nucifera HOM05D006577 ORTHO05D008428 1.7e-119 434.1 291 73.2
CDE01G0285 Ceratophyllum demersum HOM05D006577 ORTHO05D008428 3.9e-119 433.0 321 69.8
Phvul.002G121300 Phaseolus vulgaris HOM05D006577 ORTHO05D008428 3.9e-119 433.0 319 70.2
MSTRG.1757 Avicennia marina HOM05D006577 ORTHO05D008428 5.0e-119 432.6 315 72.4
RcHm_v2.0_Chr6g0304321 Rosa chinensis HOM05D006577 ORTHO05D008428 6.6e-119 432.2 320 71.6
EL10Ac8g19602 Beta vulgaris HOM05D006577 ORTHO05D008428 9.5e-118 428.3 351 63.8
ClCG11G016060 Citrullus lanatus HOM05D006577 ORTHO05D008428 9.5e-118 428.3 341 66.9
Potri.004G236300 Populus trichocarpa HOM05D006577 ORTHO05D008428 9.5e-118 428.3 323 69.7
CDE12G0431 Ceratophyllum demersum HOM05D006577 ORTHO05D008428 1.6e-117 427.6 412 58.3
HanXRQChr07g0198411 Helianthus annuus HOM05D006577 ORTHO05D008428 2.8e-117 426.8 312 71.5
Ciclev10011516m.g Citrus clementina HOM05D006577 ORTHO05D008428 1.8e-116 424.1 317 69.1
Oeu015543.2 Olea europaea HOM05D006577 ORTHO05D008428 2.3e-116 423.7 434 56.0
SEGI_36653 Sequoiadendron giganteum HOM05D006577 ORTHO05D008428 7.5e-115 418.7 322 65.2
unitig_37.g12910 Utricularia gibba HOM05D006577 ORTHO05D008428 1.7e-114 417.5 321 66.7
FAN27G1697 Fragaria x ananassa HOM05D006577 ORTHO05D008428 2.9e-114 416.8 447 62.2
ATR0568G043 Amborella trichopoda HOM05D006577 ORTHO05D008428 4.1e-113 412.9 329 66.0
FAN20G0322 Fragaria x ananassa HOM05D006577 ORTHO05D008428 5.4e-113 412.5 434 59.9
AUR62030109 Chenopodium quinoa HOM05D006577 ORTHO05D008428 2.3e-111 407.1 495 52.1
HPP92_002488 Vanilla planifolia HOM05D006577 ORTHO05D008428 5.0e-111 406.0 298 69.5
PSO502G0007 Papaver somniferum HOM05D006577 ORTHO05D008428 9.5e-110 401.7 317 65.9
PSO675G5955 Papaver somniferum HOM05D006577 ORTHO05D008428 4.7e-109 399.4 317 65.9
Sabra01G0180600 Salix brachista HOM05D006577 ORTHO05D008428 1.8e-108 397.5 392 57.9
Mapoly0190s0006 Marchantia polymorpha HOM05D006577 ORTHO05D008428 5.8e-99 365.9 394 54.1
Lj3A8G25 Lonicera japonica HOM05D006577 ORTHO05D008428 4.9e-98 362.8 260 70.8
Pp3c3_31660 Physcomitrium patens HOM05D006577 ORTHO05D008428 5.4e-97 359.4 283 64.7
QL12p004173 Quercus lobata HOM05D006577 ORTHO05D008428 3.5e-96 356.7 632 40.3
SGA_v2.0_scaffold144G35886 Striga asiatica HOM05D006577 ORTHO05D008428 2.4e-92 344.0 281 65.8
SMO172G0042 Selaginella moellendorffii HOM05D006577 ORTHO05D008428 3.8e-90 336.7 453 46.6
CBR_g50314 Chara braunii HOM05D006577 ORTHO05D008428 9.0e-84 315.5 296 55.7
Sc24g0001520 Simmondsia chinensis HOM05D006577 ORTHO05D008428 4.4e-83 313.2 230 69.6
Sed0006082 Sechium edule HOM05D006577 ORTHO05D008428 1.8e-76 291.2 378 50.0
Zm00001eb227500 Zea mays HOM05D006577 ORTHO05D008428 2.4e-76 290.8 222 66.2
Lj3A28G25 Lonicera japonica HOM05D006577 ORTHO05D008428 5.5e-65 253.1 192 68.8
Ah.09g232390 Amaranthus hybridus HOM05D006577 ORTHO05D008428 2.4e-60 237.7 316 47.5
Hund17694 Selenicereus undatus HOM05D006577 ORTHO05D008428 4.8e-53 213.4 192 61.5
Hund17692 Selenicereus undatus HOM05D006577 ORTHO05D008428 1.1e-52 212.2 126 77.0
Lj9P453T24 Lonicera japonica HOM05D006577 ORTHO05D008428 2.7e-48 197.6 156 62.8
HanXRQChr07g0198421 Helianthus annuus HOM05D006577 ORTHO05D008428 2.0e-46 191.4 186 57.0
MCO15G109 Micromonas commoda HOM05D006577 ORTHO05D008428 3.2e-41 174.1 294 37.1
CARHR123800 Cardamine hirsuta HOM05D006577 ORTHO05D008428 7.2e-33 146.4 69 97.1
Zm00001eb395460 Zea mays HOM05D006577 ORTHO05D008428 2.8e-29 134.4 97 71.1
Zm00001eb339160 Zea mays HOM05D006577 ORTHO05D008428 4.1e-28 130.6 96 69.8
Os06g0708900 Oryza sativa ssp. japonica HOM05D006577 ORTHO05D008428 6.5e-26 123.2 83 74.7
VMungo0251G3731 Vigna mungo HOM05D006577 ORTHO05D008428 8.5e-26 122.9 93 69.9
TPR.G30154 Trifolium pratense HOM05D006577 ORTHO05D008428 3.6e-24 117.5 196 41.3
MD15G1000700 Malus domestica HOM05D006577 ORTHO05D008428 1.2e-19 102.4 118 54.2
Nitab4.5_0000030g0480 Nicotiana tabacum HOM05D006577 ORTHO05D008428 2.2e-18 98.2 56 80.4
FAN21G2282 Fragaria x ananassa HOM05D006577 ORTHO05D011051 1.5e-14 85.5 154 54.5
Cre06.g280700 Chlamydomonas reinhardtii HOM05D006577 ORTHO05D008428 3.4e-14 84.3 120 39.2
FAN21G2462 Fragaria x ananassa HOM05D006577 ORTHO05D011051 7.5e-14 83.2 154 53.9
TPR.G13376 Trifolium pratense HOM05D006577 ORTHO05D008428 4.9e-13 80.5 67 62.7
BcaB08g35318 Brassica carinata HOM05D006577 ORTHO05D008428 1.1e-12 79.3 50 78.0
FAN21G2626 Fragaria x ananassa HOM05D006577 ORTHO05D011051 5.4e-12 77.0 154 53.9
FvH4_3g03932 Fragaria vesca HOM05D006577 ORTHO05D008428 2.0e-11 75.1 39 89.7
Lj3A8T28 Lonicera japonica HOM05D006577 ORTHO05D008428 7.7e-11 73.2 50 70.0
AUR62042461 Chenopodium quinoa HOM05D006577 ORTHO05D008428 1.0e-10 72.8 232 37.5
Lj3C28T3 Lonicera japonica HOM05D006577 ORTHO05D008428 5.0e-10 70.5 50 68.0


User provided reference genes

Program Settings