Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR224760 Cardamine hirsuta HOM05D003187 ORTHO05D003630 4.9e-32 140.6 74 100.0
BcaNung02707 Brassica carinata HOM05D003187 ORTHO05D003630 3.0e-13 78.2 79 58.2
C07p49720 Brassica napus HOM05D003187 ORTHO05D003630 3.0e-13 78.2 79 58.2
BolC7t45473H Brassica oleracea HOM05D003187 ORTHO05D003630 3.0e-13 78.2 79 58.2
A03p51310 Brassica napus HOM05D003187 ORTHO05D003630 5.1e-13 77.4 79 57.0
BraA03t14212Z Brassica rapa HOM05D003187 ORTHO05D003630 5.1e-13 77.4 79 57.0
C03p81220 Brassica napus HOM05D003187 ORTHO05D003630 6.7e-13 77.0 79 55.7
AL3G37850 Arabidopsis lyrata HOM05D003187 ORTHO05D003630 8.7e-13 76.6 79 58.2
AT1G36280 Arabidopsis thaliana HOM05D003187 ORTHO05D003630 8.7e-13 76.6 79 58.2
BcaC06g30583 Brassica carinata HOM05D003187 ORTHO05D003630 8.7e-13 76.6 79 57.0
BcaC09g51513 Brassica carinata HOM05D003187 ORTHO05D003630 8.7e-13 76.6 79 57.0
A01p10400 Brassica napus HOM05D003187 ORTHO05D003630 8.7e-13 76.6 79 57.0
A08p13810 Brassica napus HOM05D003187 ORTHO05D003630 8.7e-13 76.6 79 57.0
C01p12350 Brassica napus HOM05D003187 ORTHO05D003630 8.7e-13 76.6 79 57.0
BolC1t01210H Brassica oleracea HOM05D003187 ORTHO05D003630 8.7e-13 76.6 79 57.0
BraA01t00987Z Brassica rapa HOM05D003187 ORTHO05D003630 8.7e-13 76.6 79 57.0
BraA08t33360Z Brassica rapa HOM05D003187 ORTHO05D003630 8.7e-13 76.6 79 57.0
CARHR225270 Cardamine hirsuta HOM05D003187 ORTHO05D003630 8.7e-13 76.6 79 58.2
Sp7g15590 Schrenkiella parvula HOM05D003187 ORTHO05D003630 1.1e-12 76.3 79 55.7
THA.LOC104806141 Tarenaya hassleriana HOM05D003187 ORTHO05D003630 1.5e-12 75.9 79 57.0
BcaC01g00541 Brassica carinata HOM05D003187 ORTHO05D003630 1.9e-12 75.5 79 54.4
BolC3t20388H Brassica oleracea HOM05D003187 ORTHO05D003630 1.9e-12 75.5 79 54.4
AL7G35850 Arabidopsis lyrata HOM05D003187 ORTHO05D003630 2.5e-12 75.1 79 57.0
AT4G18440 Arabidopsis thaliana HOM05D003187 ORTHO05D003630 2.5e-12 75.1 79 57.0
Thhalv10025077m.g Eutrema salsugineum HOM05D003187 ORTHO05D003630 2.5e-12 75.1 79 57.0
Carub.0007s2280 Capsella rubella HOM05D003187 ORTHO05D003630 4.3e-12 74.3 79 58.2
Manes.10G018200 Manihot esculenta HOM05D003187 ORTHO05D003630 4.3e-12 74.3 79 55.7
Gohir.D04G066500 Gossypium hirsutum HOM05D003187 ORTHO05D003630 5.6e-12 73.9 79 57.0
Sabra10G0148900 Salix brachista HOM05D003187 ORTHO05D003630 5.6e-12 73.9 79 55.7
EL10Ac7g17924 Beta vulgaris HOM05D003187 ORTHO05D003630 7.4e-12 73.6 79 54.4
Potri.010G193400 Populus trichocarpa HOM05D003187 ORTHO05D003630 7.4e-12 73.6 79 54.4
PGR042G2760 Punica granatum HOM05D003187 ORTHO05D003630 7.4e-12 73.6 79 55.7
vmacro14468 Vaccinium macrocarpon HOM05D003187 ORTHO05D003630 7.4e-12 73.6 79 54.4
CAN.G584.39 Capsicum annuum HOM05D003187 ORTHO05D003630 9.6e-12 73.2 79 55.7
Ciclev10031157m.g Citrus clementina HOM05D003187 ORTHO05D003630 9.6e-12 73.2 79 55.7
Thecc.10G027100 Theobroma cacao HOM05D003187 ORTHO05D003630 9.6e-12 73.2 79 55.7
Atru.chr12.251 Acer truncatum HOM05D003187 ORTHO05D003630 1.3e-11 72.8 79 55.7
COL.COLO4_25670 Corchorus olitorius HOM05D003187 ORTHO05D003630 1.3e-11 72.8 79 55.7
Duzib114G0739 Durio zibethinus HOM05D003187 ORTHO05D003630 1.3e-11 72.8 79 55.7
CSS0009728 Camellia sinensis var. sinensis HOM05D003187 ORTHO05D003630 1.6e-11 72.4 79 54.4
CSS0010540 Camellia sinensis var. sinensis HOM05D003187 ORTHO05D003630 1.6e-11 72.4 79 54.4
Eucgr.G03026 Eucalyptus grandis HOM05D003187 ORTHO05D003630 1.6e-11 72.4 79 55.7
Gohir.A05G346100 Gossypium hirsutum HOM05D003187 ORTHO05D003630 1.6e-11 72.4 79 55.7
Gorai.012G075300 Gossypium raimondii HOM05D003187 ORTHO05D003630 1.6e-11 72.4 79 55.7
Manes.07G124700 Manihot esculenta HOM05D003187 ORTHO05D003630 1.6e-11 72.4 79 55.7
Sc17g0002050 Simmondsia chinensis HOM05D003187 ORTHO05D003630 1.6e-11 72.4 79 54.4
GSVIVG01016375001 Vitis vinifera HOM05D003187 ORTHO05D003630 1.6e-11 72.4 79 55.7
Peaxi162Scf00457g00110 Petunia axillaris HOM05D003187 ORTHO05D003630 2.1e-11 72.0 79 54.4
Hund05583 Selenicereus undatus HOM05D003187 ORTHO05D003630 2.1e-11 72.0 79 54.4
vmacro10066 Vaccinium macrocarpon HOM05D003187 ORTHO05D003630 2.1e-11 72.0 79 53.2
Aqoxy6G01396 Aquilegia oxysepala HOM05D003187 ORTHO05D003630 2.8e-11 71.6 79 55.7
Cpa.g.sc19.222 Carica papaya HOM05D003187 ORTHO05D003630 2.8e-11 71.6 79 53.2
AUR62001143 Chenopodium quinoa HOM05D003187 ORTHO05D003630 2.8e-11 71.6 79 53.2
AUR62016534 Chenopodium quinoa HOM05D003187 ORTHO05D003630 2.8e-11 71.6 79 53.2
Peaxi162Scf00297g01023 Petunia axillaris HOM05D003187 ORTHO05D003630 2.8e-11 71.6 79 55.7
Solyc07g006530.3 Solanum lycopersicum HOM05D003187 ORTHO05D003630 2.8e-11 71.6 79 54.4
Sopen07g002610 Solanum pennellii HOM05D003187 ORTHO05D003630 2.8e-11 71.6 79 54.4
PGSC0003DMG400027451 Solanum tuberosum HOM05D003187 ORTHO05D003630 2.8e-11 71.6 79 54.4
TAR369G0547 Trochodendron aralioides HOM05D003187 ORTHO05D003630 2.8e-11 71.6 79 54.4
ClCG07G003910 Citrullus lanatus HOM05D003187 ORTHO05D003630 4.8e-11 70.9 79 55.7
MELO3C025148.2 Cucumis melo HOM05D003187 ORTHO05D003630 4.8e-11 70.9 79 55.7
CsaV3_5G008870 Cucumis sativus L. HOM05D003187 ORTHO05D003630 4.8e-11 70.9 79 55.7
Migut.F00885 Erythranthe guttata HOM05D003187 ORTHO05D003630 4.8e-11 70.9 79 55.7
Aa31LG6G1160 Aethionema arabicum HOM05D003187 ORTHO05D003630 6.2e-11 70.5 79 54.4
CANSAT80G0456 Cannabis sativa HOM05D003187 ORTHO05D003630 8.1e-11 70.1 79 54.4
CANSAT80G1383 Cannabis sativa HOM05D003187 ORTHO05D003630 8.1e-11 70.1 79 54.4
Lj8A73G45 Lonicera japonica HOM05D003187 ORTHO05D003630 1.1e-10 69.7 79 54.4
MD04G1043000 Malus domestica HOM05D003187 ORTHO05D003630 1.1e-10 69.7 79 54.4
Nitab4.5_0000244g0020 Nicotiana tabacum HOM05D003187 ORTHO05D003630 1.1e-10 69.7 79 53.2
SHI03522 Sapria himalayana HOM05D003187 ORTHO05D003630 1.1e-10 69.7 79 51.9
Dinv34429 Davidia involucrata HOM05D003187 ORTHO05D003630 1.4e-10 69.3 79 55.7
TWI53G1626 Tripterygium wilfordii HOM05D003187 ORTHO05D003630 1.4e-10 69.3 79 54.4
Dinv20950 Davidia involucrata HOM05D003187 ORTHO05D003630 1.8e-10 68.9 79 54.4
Dinv20993 Davidia involucrata HOM05D003187 ORTHO05D003630 1.8e-10 68.9 79 54.4
Nitab4.5_0009672g0030 Nicotiana tabacum HOM05D003187 ORTHO05D003630 1.8e-10 68.9 79 53.2
QL08p062568 Quercus lobata HOM05D003187 ORTHO05D003630 1.8e-10 68.9 79 53.2
Sed0019761 Sechium edule HOM05D003187 ORTHO05D003630 1.8e-10 68.9 79 54.4
Hund18445 Selenicereus undatus HOM05D003187 ORTHO05D003630 1.8e-10 68.9 79 51.9
AagrBONN_evm.TU.Sc2ySwM_228.2882 Anthoceros agrestis HOM05D003187 ORTHO05D003630 2.4e-10 68.6 79 50.6
Haze_17177 Corylus avellana HOM05D003187 ORTHO05D003630 2.4e-10 68.6 79 53.2
Nitab4.5_0008689g0020 Nicotiana tabacum HOM05D003187 ORTHO05D003630 2.4e-10 68.6 79 53.2
SalBow1G1358 Salvia bowleyana HOM05D003187 ORTHO05D003630 2.4e-10 68.6 79 53.2
arahy.Tifrunner.gnm1.ann1.GJ5BI6 Arachis hypogaea HOM05D003187 ORTHO05D003630 3.1e-10 68.2 79 53.2
arahy.Tifrunner.gnm1.ann1.K3QQ9E Arachis hypogaea HOM05D003187 ORTHO05D003630 3.1e-10 68.2 79 53.2
arahy.Tifrunner.gnm1.ann1.P69V6G Arachis hypogaea HOM05D003187 ORTHO05D003630 3.1e-10 68.2 79 53.2
Glyma.02G254000 Glycine max HOM05D003187 ORTHO05D003630 3.1e-10 68.2 79 53.2
Hma1.2p1_0710F.1_g207370 Hydrangea macrophylla HOM05D003187 ORTHO05D003630 3.1e-10 68.2 79 53.2
Lalb_Chr10g0104991 Lupinus albus HOM05D003187 ORTHO05D003630 3.1e-10 68.2 79 53.2
Prupe.1G197600 Prunus persica HOM05D003187 ORTHO05D003630 3.1e-10 68.2 79 53.2
Prupe.7G059800 Prunus persica HOM05D003187 ORTHO05D003630 3.1e-10 68.2 79 53.2
CiPaw.05G043000 Carya illinoinensis HOM05D003187 ORTHO05D003630 4.0e-10 67.8 79 51.9
Glyma.14G062500 Glycine max HOM05D003187 ORTHO05D003630 4.0e-10 67.8 79 53.2
Nn2g11364 Nelumbo nucifera HOM05D003187 ORTHO05D003630 4.0e-10 67.8 79 54.4
Nn2g12076 Nelumbo nucifera HOM05D003187 ORTHO05D003630 4.0e-10 67.8 79 54.4
DCAR_011784 Daucus carota HOM05D003187 ORTHO05D003630 5.3e-10 67.4 79 51.9
PSO384G1733 Papaver somniferum HOM05D003187 ORTHO05D003630 5.3e-10 67.4 79 51.9
Phvul.008G226900 Phaseolus vulgaris HOM05D003187 ORTHO05D003630 6.9e-10 67.0 79 51.9
Rhsim09G0171800 Rhododendron simsii HOM05D003187 ORTHO05D003630 6.9e-10 67.0 90 48.9
arahy.Tifrunner.gnm1.ann1.0XII0R Arachis hypogaea HOM05D003187 ORTHO05D003630 9.0e-10 66.6 79 51.9
Cc05_g02550 Coffea canephora HOM05D003187 ORTHO05D003630 9.0e-10 66.6 79 51.9
PSO339G2876 Papaver somniferum HOM05D003187 ORTHO05D003630 1.2e-09 66.2 79 50.6
RcHm_v2.0_Chr7g0194071 Rosa chinensis HOM05D003187 ORTHO05D003630 1.2e-09 66.2 79 53.2
SGA_v2.0_scaffold62G21340 Striga asiatica HOM05D003187 ORTHO05D003630 1.2e-09 66.2 79 51.9
FAN04G2380 Fragaria x ananassa HOM05D003187 ORTHO05D003630 1.5e-09 65.9 79 51.9
FAN08G2825 Fragaria x ananassa HOM05D003187 ORTHO05D003630 1.5e-09 65.9 79 51.9
FAN13G0040 Fragaria x ananassa HOM05D003187 ORTHO05D003630 1.5e-09 65.9 79 51.9
FAN18G0443 Fragaria x ananassa HOM05D003187 ORTHO05D003630 1.5e-09 65.9 79 51.9
FAN18G2229 Fragaria x ananassa HOM05D003187 ORTHO05D003630 1.5e-09 65.9 79 51.9
Os03g0313600 Oryza sativa ssp. japonica HOM05D003187 ORTHO05D003630 1.5e-09 65.9 79 49.4
CiPaw.06G148700 Carya illinoinensis HOM05D003187 ORTHO05D003630 2.0e-09 65.5 79 51.9
Oeu027845.1 Olea europaea HOM05D003187 ORTHO05D003630 2.0e-09 65.5 79 53.2
SEGI_04750 Sequoiadendron giganteum HOM05D003187 ORTHO05D003630 2.0e-09 65.5 78 55.1
Zm00001eb015040 Zea mays HOM05D003187 ORTHO05D003630 2.0e-09 65.5 79 49.4
Cc06_g17320 Coffea canephora HOM05D003187 ORTHO05D003630 2.6e-09 65.1 79 50.6
Medtr7g092860 Medicago truncatula HOM05D003187 ORTHO05D003630 2.6e-09 65.1 79 51.9
Pp3c9_17690 Physcomitrium patens HOM05D003187 ORTHO05D003630 2.6e-09 65.1 79 48.1
Psat6g127920 Pisum sativum HOM05D003187 ORTHO05D003630 2.6e-09 65.1 79 51.9
Cc05_g02410 Coffea canephora HOM05D003187 ORTHO05D003630 3.4e-09 64.7 79 49.4
HPP92_018291 Vanilla planifolia HOM05D003187 ORTHO05D003630 3.4e-09 64.7 79 49.4
CDE04G1847 Ceratophyllum demersum HOM05D003187 ORTHO05D003630 4.5e-09 64.3 79 51.9
CDE12G0549 Ceratophyllum demersum HOM05D003187 ORTHO05D003630 4.5e-09 64.3 79 51.9
FvH4_5g04980 Fragaria vesca HOM05D003187 ORTHO05D003630 4.5e-09 64.3 79 50.6
LjContig00357g0016423 Lotus japonicus HOM05D003187 ORTHO05D003630 4.5e-09 64.3 79 49.4
FAN06G4812 Fragaria x ananassa HOM05D003187 ORTHO05D003630 5.8e-09 63.9 79 50.6
VMungo0647G1330 Vigna mungo HOM05D003187 ORTHO05D003630 5.8e-09 63.9 79 51.9
Glyma.10G247850 Glycine max HOM05D003187 ORTHO05D003630 7.6e-09 63.5 79 49.4
MBI17_g24519_MAGBIO Magnolia biondii HOM05D003187 ORTHO05D003630 7.6e-09 63.5 79 51.9
Mapoly0031s0040 Marchantia polymorpha HOM05D003187 ORTHO05D003630 1.0e-08 63.2 79 48.1
FAN10G0795 Fragaria x ananassa HOM05D003187 ORTHO05D003630 1.3e-08 62.8 79 51.9
TPR.G8049 Trifolium pratense HOM05D003187 ORTHO05D003630 1.3e-08 62.8 79 50.6
ATR0026G045 Amborella trichopoda HOM05D003187 ORTHO05D003630 1.7e-08 62.4 79 48.1
BcaB04g18477 Brassica carinata HOM05D003187 ORTHO05D003630 2.2e-08 62.0 79 48.1
Cc00_g04440 Coffea canephora HOM05D003187 ORTHO05D003630 2.2e-08 62.0 90 47.8
Medtr5g081750 Medicago truncatula HOM05D003187 ORTHO05D003630 2.2e-08 62.0 79 50.6
Cre13.g565450 Chlamydomonas reinhardtii HOM05D003187 ORTHO05D003630 2.9e-08 61.6 79 45.6
FAN03G0133 Fragaria x ananassa HOM05D003187 ORTHO05D003630 2.9e-08 61.6 79 49.4
unitig_27.g25097 Utricularia gibba HOM05D003187 ORTHO05D003630 3.8e-08 61.2 79 48.1
CBR_g16842 Chara braunii HOM05D003187 ORTHO05D003630 4.9e-08 60.8 79 45.6
HanXRQChr14g0459901 Helianthus annuus HOM05D003187 ORTHO05D003630 4.9e-08 60.8 79 50.6
Lsat_1_v5_gn_7_58981 Lactuca sativa HOM05D003187 ORTHO05D003630 4.9e-08 60.8 79 50.6
Zm00001eb297360 Zea mays HOM05D003187 ORTHO05D003630 1.1e-07 59.7 73 47.9
PRCOL_00002332 Prasinoderma coloniale HOM05D003187 ORTHO05D003630 1.9e-07 58.9 79 44.3
SMO356G0706 Selaginella moellendorffii HOM05D003187 ORTHO05D003630 1.9e-07 58.9 79 44.3
Zm00001eb319880 Zea mays HOM05D003187 ORTHO05D003630 1.9e-07 58.9 74 47.3
Actinidia13914 Actinidia chinensis HOM05D003187 ORTHO05D003630 2.5e-07 58.5 66 53.0
Actinidia25354 Actinidia chinensis HOM05D003187 ORTHO05D003630 2.5e-07 58.5 66 53.0
ECA238G3690 Erigeron canadensis HOM05D003187 ORTHO05D003630 3.2e-07 58.2 79 50.6
HanXRQChr07g0202751 Helianthus annuus HOM05D003187 ORTHO05D003630 3.2e-07 58.2 79 49.4
ECA232G0632 Erigeron canadensis HOM05D003187 ORTHO05D003630 7.1e-07 57.0 78 50.0
Lsat_1_v5_gn_2_122660 Lactuca sativa HOM05D003187 ORTHO05D003630 9.3e-07 56.6 79 49.4
MCO12G170 Micromonas commoda HOM05D003187 ORTHO05D003630 9.3e-07 56.6 78 42.3
FvH4_7g08522 Fragaria vesca HOM05D003187 ORTHO05D003630 2.1e-06 55.5 73 47.9
HanXRQChr01g0017651 Helianthus annuus HOM05D003187 ORTHO05D003630 2.1e-06 55.5 79 45.6
RcHm_v2.0_Chr5g0043781 Rosa chinensis HOM05D003187 ORTHO05D003630 2.1e-06 55.5 98 40.8


User provided reference genes

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