Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR222330 Cardamine hirsuta HOM05D003956 ORTHO05D004850 0.0e+00 1895.6 957 100.0
AT4G15530 Arabidopsis thaliana HOM05D003956 ORTHO05D004850 0.0e+00 1776.5 956 94.0
AL7G39990 Arabidopsis lyrata HOM05D003956 ORTHO05D004850 0.0e+00 1771.9 958 93.7
C01p27430 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1748.8 953 92.3
A01p22040 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1748.0 956 92.3
BraA01t02110Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1748.0 956 92.3
Thhalv10024330m.g Eutrema salsugineum HOM05D003956 ORTHO05D004850 0.0e+00 1745.7 958 92.7
BcaNung00266 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1744.6 956 92.1
BolC1t02682H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1739.5 960 91.7
BcaC06g32940 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1737.2 958 92.1
C07p47210 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1729.5 958 91.3
BolC7t45243H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1725.7 958 91.0
BraA03t14011Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1723.4 958 91.1
Sp7g13780 Schrenkiella parvula HOM05D003956 ORTHO05D004850 0.0e+00 1717.6 959 91.0
A03p49170 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1702.2 944 91.0
Aa31LG9G1910 Aethionema arabicum HOM05D003956 ORTHO05D004850 0.0e+00 1678.3 957 88.8
BcaC09g50248 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1653.6 871 95.1
Carub.0007s2635 Capsella rubella HOM05D003956 ORTHO05D004850 0.0e+00 1627.8 857 95.3
THA.LOC104820228 Tarenaya hassleriana HOM05D003956 ORTHO05D004850 0.0e+00 1595.5 975 83.1
Manes.03G188300 Manihot esculenta HOM05D003956 ORTHO05D004850 0.0e+00 1530.0 958 80.2
CiPaw.01G156600 Carya illinoinensis HOM05D003956 ORTHO05D004850 0.0e+00 1525.8 963 79.3
Atru.chr4.2704 Acer truncatum HOM05D003956 ORTHO05D004850 0.0e+00 1520.0 968 79.9
PGR004G0287 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1520.0 946 81.2
Prupe.1G146600 Prunus persica HOM05D003956 ORTHO05D004850 0.0e+00 1518.8 893 83.9
QL06p006231 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1518.8 977 79.0
Potri.010G027800 Populus trichocarpa HOM05D003956 ORTHO05D004850 0.0e+00 1518.1 894 84.8
TAR365G1004 Trochodendron aralioides HOM05D003956 ORTHO05D004850 0.0e+00 1518.1 885 84.4
Cfa015539 Carpinus fangiana HOM05D003956 ORTHO05D004850 0.0e+00 1517.7 964 80.0
TWI09G0935 Tripterygium wilfordii HOM05D003956 ORTHO05D004850 0.0e+00 1516.1 961 79.1
Haze_01011 Corylus avellana HOM05D003956 ORTHO05D004850 0.0e+00 1514.2 964 80.3
Rhsim04G0213100 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1514.2 972 78.2
Peaxi162Scf00095g00414 Petunia axillaris HOM05D003956 ORTHO05D004850 0.0e+00 1513.4 892 84.1
CANSAT78G1736 Cannabis sativa HOM05D003956 ORTHO05D004850 0.0e+00 1512.7 901 82.8
GSVIVG01017850001 Vitis vinifera HOM05D003956 ORTHO05D004850 0.0e+00 1510.7 893 84.0
Duzib212G0153 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1509.6 891 83.6
Sopen01g032260 Solanum pennellii HOM05D003956 ORTHO05D004850 0.0e+00 1506.5 892 83.9
Gorai.011G181800 Gossypium raimondii HOM05D003956 ORTHO05D004850 0.0e+00 1504.2 890 83.6
Solyc01g080460.3 Solanum lycopersicum HOM05D003956 ORTHO05D004850 0.0e+00 1504.2 892 83.6
Gohir.D10G162900 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1500.0 890 83.5
Nn3g21184 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1499.6 917 80.9
Actinidia23451 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1498.8 893 83.2
Eucgr.H03642 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1496.9 965 77.8
CAN.G889.10 Capsicum annuum HOM05D003956 ORTHO05D004850 0.0e+00 1496.5 892 83.0
Dinv44455 Davidia involucrata HOM05D003956 ORTHO05D004850 0.0e+00 1495.7 893 83.0
MD16G1179500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1493.8 964 78.1
Nitab4.5_0000059g0230 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1493.8 904 82.4
CsaV3_3G013930 Cucumis sativus L. HOM05D003956 ORTHO05D004850 0.0e+00 1491.5 948 79.2
Lj4g0014830 Lotus japonicus HOM05D003956 ORTHO05D004850 0.0e+00 1489.9 960 77.6
Nitab4.5_0010477g0010 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1488.0 912 81.4
MD13G1177500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1487.6 1003 75.4
RcHm_v2.0_Chr4g0420131 Rosa chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1486.5 885 82.5
Migut.G00282 Erythranthe guttata HOM05D003956 ORTHO05D004850 0.0e+00 1486.1 870 83.7
Glyma.07G253700 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1485.7 892 82.3
FvH4_4g16670 Fragaria vesca HOM05D003956 ORTHO05D004850 0.0e+00 1484.5 890 81.8
Sabra10G0012900 Salix brachista HOM05D003956 ORTHO05D004850 0.0e+00 1484.5 894 83.0
TPR.G28132 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1484.5 892 82.4
Ciclev10006837m.g Citrus clementina HOM05D003956 ORTHO05D004850 0.0e+00 1483.0 908 80.9
Sed0002405 Sechium edule HOM05D003956 ORTHO05D004850 0.0e+00 1481.5 884 82.6
ECA240G3955 Erigeron canadensis HOM05D003956 ORTHO05D004850 0.0e+00 1479.5 892 81.4
VMungo1215G0684 Vigna mungo HOM05D003956 ORTHO05D004850 0.0e+00 1479.5 892 82.1
Cpa.g.sc16.74 Carica papaya HOM05D003956 ORTHO05D004850 0.0e+00 1479.2 893 82.3
Cc03_g02730 Coffea canephora HOM05D003956 ORTHO05D004850 0.0e+00 1478.4 896 81.5
FAN22G1243 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1478.4 890 81.7
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 0.0e+00 1477.2 882 82.5
FAN12G0499 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1476.5 900 80.9
FAN12G2270 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1476.5 900 80.9
Glyma.17G020600 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1473.8 953 77.6
Actinidia40209 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1472.6 885 82.3
FAN17G1489 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1472.2 900 80.8
CSS0033563 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1471.1 875 83.0
MD13G1177400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1469.9 871 83.0
FAN07G1911 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1468.0 911 79.9
Aqoxy2G03183 Aquilegia oxysepala HOM05D003956 ORTHO05D004850 0.0e+00 1467.2 888 81.3
Hund20662 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1465.3 882 82.3
Phvul.003G098200 Phaseolus vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1464.1 892 81.4
Lalb_Chr13g0303991 Lupinus albus HOM05D003956 ORTHO05D004850 0.0e+00 1463.7 892 81.2
SalBow2G1708 Salvia bowleyana HOM05D003956 ORTHO05D004850 0.0e+00 1457.6 874 82.2
QL06p005921 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1457.2 872 82.2
MSTRG.10030 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1456.4 878 81.3
MSTRG.10031 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1455.7 874 81.6
PSO302G0065 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1455.7 893 79.6
Nn4g26122 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1454.5 874 82.2
Lsat_1_v5_gn_5_51481 Lactuca sativa HOM05D003956 ORTHO05D004850 0.0e+00 1453.7 872 82.0
PSO170G3340 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1450.3 895 79.6
Os05g0405000 Oryza sativa ssp. japonica HOM05D003956 ORTHO05D004850 0.0e+00 1447.2 890 79.2
Lj3C806G12 Lonicera japonica HOM05D003956 ORTHO05D004850 0.0e+00 1445.3 906 79.9
Zm00001eb349810 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1444.1 892 79.0
ATR0626G228 Amborella trichopoda HOM05D003956 ORTHO05D004850 0.0e+00 1441.4 874 81.0
PGSC0003DMG400032107 Solanum tuberosum HOM05D003956 ORTHO05D004850 0.0e+00 1439.5 842 84.0
Duzib151G0049 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1438.7 859 82.3
Psat0ss7919g0200 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1438.7 858 81.9
Sc25g0004550 Simmondsia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1438.3 858 82.9
MELO3C006585.2 Cucumis melo HOM05D003956 ORTHO05D004850 0.0e+00 1436.4 844 83.6
Thecc.04G272600 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1435.2 935 77.9
Thecc.04G272800 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1433.3 874 80.9
CDE08G0632 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1432.9 874 79.7
MD16G1179300 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1432.9 855 82.2
SGA_v2.0_scaffold142G35643 Striga asiatica HOM05D003956 ORTHO05D004850 0.0e+00 1432.5 854 82.6
Duzib151G0209 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1425.2 870 80.7
MD16G1179400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1416.7 855 81.6
arahy.Tifrunner.gnm1.ann1.EQKV61 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1415.6 926 77.3
Hma1.2p1_0511F.1_g169230 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1412.5 878 80.4
Hund19586 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1411.0 844 81.6
arahy.Tifrunner.gnm1.ann1.YQ8C5N Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1410.2 851 81.7
DCAR_023283 Daucus carota HOM05D003956 ORTHO05D004850 0.0e+00 1408.3 893 78.6
CDE02G0811 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1407.9 891 78.0
arahy.Tifrunner.gnm1.ann1.I3NY02 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1394.0 902 77.1
Mapoly0009s0124 Marchantia polymorpha HOM05D003956 ORTHO05D004850 0.0e+00 1390.9 917 75.1
Pp3c5_22540 Physcomitrium patens HOM05D003956 ORTHO05D004850 0.0e+00 1388.6 887 76.8
PGR031G3666 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1381.3 862 78.8
AagrBONN_evm.TU.Sc2ySwM_228.3276 Anthoceros agrestis HOM05D003956 ORTHO05D004850 0.0e+00 1378.6 882 76.3
EL10Ac1g01820 Beta vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1372.8 880 78.5
BcaC09g50243 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1370.9 777 89.3
Ah.11g043140 Amaranthus hybridus HOM05D003956 ORTHO05D004850 0.0e+00 1366.3 881 78.3
vmacro08238 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1360.1 1006 70.2
ClCG05G005590 Citrullus lanatus HOM05D003956 ORTHO05D004850 0.0e+00 1359.4 873 78.5
Rhsim02G0016700 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1357.0 882 77.8
SMO351G0542 Selaginella moellendorffii HOM05D003956 ORTHO05D004850 0.0e+00 1352.4 870 75.5
unitig_26.g8936 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1343.9 873 76.9
Eucgr.B01186 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1343.2 823 79.6
Oeu032695.1 Olea europaea HOM05D003956 ORTHO05D004850 0.0e+00 1327.4 774 84.2
Psat4g028880 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1325.5 803 80.4
Actinidia32373 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1308.1 885 74.9
arahy.Tifrunner.gnm1.ann1.DC6B04 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1304.7 902 73.1
CSS0013368 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1298.1 803 81.1
CSS0018237 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1269.6 882 74.9
Hma1.2p1_2025F.1_g311530 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1240.3 878 73.1
vmacro15287 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1228.8 876 72.3
Gohir.A10G105700 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1225.7 735 82.6
Zm00001eb287770 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1202.6 730 80.0
MCO12G211 Micromonas commoda HOM05D003956 ORTHO05D004850 0.0e+00 1196.0 854 69.0
Cre17.g734548 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 0.0e+00 1181.0 872 67.1
TPR.G28133 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1172.1 878 68.0
unitig_749.g14056 Utricularia gibba HOM05D003956 ORTHO05D004850 6.5e-312 1073.9 633 82.5
Cre10.g424750 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 4.3e-306 1054.7 880 60.2
Migut.G00280 Erythranthe guttata HOM05D003956 ORTHO05D004850 3.2e-285 985.3 581 82.8
MCO01G687 Micromonas commoda HOM05D003956 ORTHO05D004850 1.3e-262 910.2 913 54.9
Medtr4g118350 Medicago truncatula HOM05D003956 ORTHO05D004850 8.6e-262 907.5 576 77.8
AUR62034950 Chenopodium quinoa HOM05D003956 ORTHO05D004850 4.3e-213 745.7 522 73.8
AUR62035455 Chenopodium quinoa HOM05D003956 ORTHO05D004850 4.5e-210 735.7 437 84.2
AUR62035456 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.1e-203 714.5 505 72.9
HanXRQChr03g0080571 Helianthus annuus HOM05D003956 ORTHO05D004850 6.3e-188 662.1 419 79.5
AUR62034949 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.3e-185 654.4 450 73.8
CBR_g50184 Chara braunii HOM05D003956 ORTHO05D004850 1.6e-183 647.5 743 48.9
BcaC06g33414 Brassica carinata HOM05D003956 ORTHO05D004850 1.1e-176 624.8 337 92.6
SGA_v2.0_scaffold86G26866 Striga asiatica HOM05D003956 ORTHO05D004850 6.5e-161 572.4 466 64.4
Medtr4g118355 Medicago truncatula HOM05D003956 ORTHO05D004850 3.3e-136 490.3 293 80.9
SGA_v2.0_scaffold86G26865 Striga asiatica HOM05D003956 ORTHO05D004850 8.6e-129 465.7 390 61.8
AUR62034328 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.0e-105 389.0 422 51.4
arahy.Tifrunner.gnm1.ann1.9WT78J Arachis hypogaea HOM05D003956 ORTHO05D004850 5.8e-101 373.2 318 62.9
HanXRQChr16g0518081 Helianthus annuus HOM05D003956 ORTHO05D004850 1.6e-90 338.6 216 77.3
arahy.Tifrunner.gnm1.ann1.HZTZ4X Arachis hypogaea HOM05D003956 ORTHO05D004850 9.3e-83 312.8 260 62.3
arahy.Tifrunner.gnm1.ann1.7LSJ4G Arachis hypogaea HOM05D003956 ORTHO05D004850 1.1e-64 252.7 227 60.8
arahy.Tifrunner.gnm1.ann1.989M5Y Arachis hypogaea HOM05D003956 ORTHO05D004850 3.2e-59 234.6 213 58.2
unitig_749.g14057 Utricularia gibba HOM05D003956 ORTHO05D004850 9.7e-56 223.0 151 71.5
AagrBONN_evm.TU.Sc2ySwM_362.937 Anthoceros agrestis HOM05D003956 ORTHO05D004850 7.7e-45 186.8 119 73.9
BcaC09g50244 Brassica carinata HOM05D003956 ORTHO05D004850 2.2e-39 168.7 85 97.6
arahy.Tifrunner.gnm1.ann1.S9XVUY Arachis hypogaea HOM05D003956 ORTHO05D004850 5.4e-38 164.1 268 39.6
Pp3c6_6540 Physcomitrium patens HOM05D003956 ORTHO05D004850 6.5e-36 157.1 118 66.9
GSVIVG01018502001 Vitis vinifera HOM05D003956 ORTHO05D004850 1.0e-28 133.3 81 77.8
arahy.Tifrunner.gnm1.ann1.LGH8AH Arachis hypogaea HOM05D003956 ORTHO05D004850 1.7e-28 132.5 83 74.7
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 1.0e-25 123.2 91 63.7
Pp3s196_40 Physcomitrium patens HOM05D003956 ORTHO05D044360 2.3e-25 122.1 438 28.1
QL06p005983 Quercus lobata HOM05D003956 ORTHO05D004850 1.4e-22 112.8 130 51.5
arahy.Tifrunner.gnm1.ann1.G5444S Arachis hypogaea HOM05D003956 ORTHO05D004850 1.7e-20 105.9 95 60.0
TPR.G26738 Trifolium pratense HOM05D003956 ORTHO05D000576 3.3e-19 101.7 64 71.9
BcaC09g50249 Brassica carinata HOM05D003956 ORTHO05D004850 5.6e-19 100.9 83 65.1
TPR.G35464 Trifolium pratense HOM05D003956 ORTHO05D004850 5.8e-16 90.9 60 66.7
MBI15_g32557_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 1.5e-11 76.3 57 70.2
arahy.Tifrunner.gnm1.ann1.57CL3B Arachis hypogaea HOM05D003956 ORTHO05D004850 5.6e-11 74.3 51 70.6
arahy.Tifrunner.gnm1.ann1.V4Y3U4 Arachis hypogaea HOM05D003956 ORTHO05D004850 7.3e-11 73.9 49 73.5
Nn8g40271 Nelumbo nucifera HOM05D001541 ORTHO05D001465 3.6e-10 71.6 63 60.3
Pp3c5_22980 Physcomitrium patens HOM05D003956 ORTHO05D004850 1.8e-09 69.3 43 74.4
HanXRQChr09g0261911 Helianthus annuus HOM05D000495 ORTHO05D000357 8.9e-09 67.0 43 69.8
SGA_v2.0_scaffold86G26869 Striga asiatica HOM05D000924 ORTHO05D001209 7.5e-08 63.9 48 62.5
arahy.Tifrunner.gnm1.ann1.GGZS5I Arachis hypogaea HOM05D003956 ORTHO05D004850 1.9e-06 59.3 43 65.1


User provided reference genes

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