Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR221640 Cardamine hirsuta HOM05D007170 ORTHO05D009243 3.5e-86 321.6 165 100.0
AL7G40850 Arabidopsis lyrata HOM05D007170 ORTHO05D009243 1.0e-66 256.9 157 85.4
AT4G14970 Arabidopsis thaliana HOM05D007170 ORTHO05D009243 4.0e-66 255.0 157 84.7
Thhalv10024215m.g Eutrema salsugineum HOM05D007170 ORTHO05D009243 5.2e-66 254.6 142 90.8
BcaC07g37864 Brassica carinata HOM05D007170 ORTHO05D009243 3.7e-64 248.4 159 81.8
A08p11580 Brassica napus HOM05D007170 ORTHO05D009243 4.1e-63 245.0 160 81.9
BolC8t48255H Brassica oleracea HOM05D007170 ORTHO05D009243 9.2e-63 243.8 160 81.2
BcaB04g18275 Brassica carinata HOM05D007170 ORTHO05D009243 1.2e-62 243.4 160 81.9
BraA08t33150Z Brassica rapa HOM05D007170 ORTHO05D009243 5.9e-62 241.1 160 81.2
Atru.chr8.950 Acer truncatum HOM05D007170 ORTHO05D009243 2.0e-49 199.5 143 69.2
Cfa020492 Carpinus fangiana HOM05D007170 ORTHO05D009243 4.9e-48 194.9 157 61.8
Sabra06G0017000 Salix brachista HOM05D007170 ORTHO05D009243 1.1e-47 193.7 143 65.0
Potri.006G023500 Populus trichocarpa HOM05D007170 ORTHO05D009243 4.1e-47 191.8 143 63.6
Prupe.3G191100 Prunus persica HOM05D007170 ORTHO05D009243 5.4e-47 191.4 143 66.4
MD09G1135500 Malus domestica HOM05D007170 ORTHO05D009243 3.5e-46 188.7 143 67.1
Dinv20277 Davidia involucrata HOM05D007170 ORTHO05D009243 4.6e-46 188.3 140 66.4
Thecc.01G177100 Theobroma cacao HOM05D007170 ORTHO05D009243 1.0e-45 187.2 147 63.3
RcHm_v2.0_Chr2g0154431 Rosa chinensis HOM05D007170 ORTHO05D009243 3.9e-45 185.3 143 65.0
Peaxi162Scf00647g00012 Petunia axillaris HOM05D007170 ORTHO05D009243 1.9e-44 183.0 141 64.5
Lj7A482G28 Lonicera japonica HOM05D007170 ORTHO05D009243 2.5e-44 182.6 141 63.1
FvH4_6g39900 Fragaria vesca HOM05D007170 ORTHO05D009243 4.3e-44 181.8 155 61.3
CANSAT64G1590 Cannabis sativa HOM05D007170 ORTHO05D009243 7.3e-44 181.0 157 57.3
Sopen01g040790 Solanum pennellii HOM05D007170 ORTHO05D009243 7.3e-44 181.0 141 63.8
Nitab4.5_0002247g0080 Nicotiana tabacum HOM05D007170 ORTHO05D009243 9.5e-44 180.6 141 63.8
Solyc01g097110.2 Solanum lycopersicum HOM05D007170 ORTHO05D009243 9.5e-44 180.6 141 63.8
TAR626G1158 Trochodendron aralioides HOM05D007170 ORTHO05D009243 2.1e-43 179.5 143 62.2
DCAR_006644 Daucus carota HOM05D007170 ORTHO05D009243 2.8e-43 179.1 141 63.1
FAN02G4004 Fragaria x ananassa HOM05D007170 ORTHO05D009243 2.8e-43 179.1 143 62.9
Nitab4.5_0005905g0020 Nicotiana tabacum HOM05D007170 ORTHO05D009243 2.8e-43 179.1 141 62.4
Ciclev10010909m.g Citrus clementina HOM05D007170 ORTHO05D009243 3.6e-43 178.7 157 58.0
Haze_09546 Corylus avellana HOM05D007170 ORTHO05D009243 1.4e-42 176.8 170 55.9
Gorai.001G214900 Gossypium raimondii HOM05D007170 ORTHO05D009243 1.8e-42 176.4 147 60.5
CiPaw.03G198500 Carya illinoinensis HOM05D007170 ORTHO05D009243 2.3e-42 176.0 157 58.6
Manes.09G075018 Manihot esculenta HOM05D007170 ORTHO05D009243 3.1e-42 175.6 147 58.5
MBI02_g15149_MAGBIO Magnolia biondii HOM05D007170 ORTHO05D009243 4.0e-42 175.3 144 60.4
CSS0006494 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 5.2e-42 174.9 143 62.2
CSS0034103 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 5.2e-42 174.9 143 62.2
FAN14G4936 Fragaria x ananassa HOM05D007170 ORTHO05D009243 8.9e-42 174.1 158 57.6
Actinidia06806 Actinidia chinensis HOM05D007170 ORTHO05D009243 1.2e-41 173.7 141 63.1
Cc02_g31000 Coffea canephora HOM05D007170 ORTHO05D009243 1.5e-41 173.3 142 61.3
Duzib138G0290 Durio zibethinus HOM05D007170 ORTHO05D009243 1.5e-41 173.3 147 59.2
Nn3g20634 Nelumbo nucifera HOM05D007170 ORTHO05D009243 1.5e-41 173.3 158 56.3
Gohir.D07G192100 Gossypium hirsutum HOM05D007170 ORTHO05D009243 2.0e-41 172.9 147 59.9
CSS0002264 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 3.4e-41 172.2 137 64.2
HanXRQChr10g0314771 Helianthus annuus HOM05D007170 ORTHO05D009243 4.4e-41 171.8 142 60.6
Eucgr.A00891 Eucalyptus grandis HOM05D007170 ORTHO05D009243 7.6e-41 171.0 157 54.8
ECA238G4341 Erigeron canadensis HOM05D007170 ORTHO05D009243 2.9e-40 169.1 142 59.9
Aqoxy3G00362 Aquilegia oxysepala HOM05D007170 ORTHO05D009243 3.2e-39 165.6 140 58.6
Sc07g0002130 Simmondsia chinensis HOM05D007170 ORTHO05D009243 4.1e-39 165.2 143 55.2
PSO675G2674 Papaver somniferum HOM05D007170 ORTHO05D009243 7.1e-39 164.5 145 55.9
PSO541G2476 Papaver somniferum HOM05D007170 ORTHO05D009243 1.2e-38 163.7 142 57.0
Lsat_1_v5_gn_2_66140 Lactuca sativa HOM05D007170 ORTHO05D009243 2.1e-38 162.9 144 57.6
Migut.B01114 Erythranthe guttata HOM05D007170 ORTHO05D009243 7.8e-38 161.0 145 55.9
Gohir.A07G185500 Gossypium hirsutum HOM05D007170 ORTHO05D009243 1.9e-36 156.4 136 58.8
Os07g0154400 Oryza sativa ssp. japonica HOM05D007170 ORTHO05D009243 2.5e-36 156.0 155 47.7
PGR031G3275 Punica granatum HOM05D007170 ORTHO05D009243 3.6e-35 152.1 160 52.5
ATR1098G002 Amborella trichopoda HOM05D007170 ORTHO05D009243 6.2e-35 151.4 144 52.8
QL08p022040 Quercus lobata HOM05D007170 ORTHO05D009243 2.4e-34 149.4 187 44.4
Cpa.g.sc8.300 Carica papaya HOM05D007170 ORTHO05D009243 7.6e-33 144.4 117 59.0
Zm00001eb117500 Zea mays HOM05D007170 ORTHO05D009243 9.9e-33 144.1 159 45.9
HPP92_019550 Vanilla planifolia HOM05D007170 ORTHO05D009243 1.1e-31 140.6 143 49.7
SGA_v2.0_scaffold172G38980 Striga asiatica HOM05D007170 ORTHO05D009243 1.9e-31 139.8 141 50.4
Oeu038464.1 Olea europaea HOM05D007170 ORTHO05D009243 1.1e-28 130.6 203 39.9
GSVIVG01020797001 Vitis vinifera HOM05D007170 ORTHO05D009243 1.9e-28 129.8 143 49.0
SalBow8G4071 Salvia bowleyana HOM05D007170 ORTHO05D009243 2.5e-28 129.4 186 39.8
SEGI_23823 Sequoiadendron giganteum HOM05D007170 ORTHO05D009243 4.8e-27 125.2 145 42.1
Pp3c3_20180 Physcomitrium patens HOM05D007170 ORTHO05D009243 3.8e-24 115.5 158 39.2
Mapoly0001s0378 Marchantia polymorpha HOM05D007170 ORTHO05D009243 3.2e-23 112.5 145 41.4
CBR_g3147 Chara braunii HOM05D007170 ORTHO05D009243 6.0e-22 108.2 138 39.9
AagrBONN_evm.TU.Sc2ySwM_344.1322 Anthoceros agrestis HOM05D007170 ORTHO05D009243 2.5e-20 102.8 147 36.1
Cpa.g.sc8.299 Carica papaya HOM05D007170 ORTHO05D009243 7.9e-06 54.7 41 61.0


User provided reference genes

Program Settings