Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR221630 Cardamine hirsuta HOM05D007170 ORTHO05D009243 1.8e-235 818.9 420 100.0
AL7G40850 Arabidopsis lyrata HOM05D007170 ORTHO05D009243 3.1e-208 728.4 405 92.3
AT4G14970 Arabidopsis thaliana HOM05D007170 ORTHO05D009243 1.7e-206 722.6 405 91.9
BcaB04g18275 Brassica carinata HOM05D007170 ORTHO05D009243 6.5e-206 720.7 405 90.9
Thhalv10024215m.g Eutrema salsugineum HOM05D007170 ORTHO05D009243 7.2e-205 717.2 410 90.5
BcaC07g37864 Brassica carinata HOM05D007170 ORTHO05D009243 8.0e-204 713.8 405 90.1
BolC8t48255H Brassica oleracea HOM05D007170 ORTHO05D009243 8.0e-204 713.8 405 90.1
BraA08t33150Z Brassica rapa HOM05D007170 ORTHO05D009243 3.0e-203 711.8 405 90.4
A08p11580 Brassica napus HOM05D007170 ORTHO05D009243 4.4e-202 708.0 405 89.9
Haze_09546 Corylus avellana HOM05D007170 ORTHO05D009243 1.5e-162 576.6 407 72.0
Cfa020492 Carpinus fangiana HOM05D007170 ORTHO05D009243 5.8e-162 574.7 407 72.2
Duzib138G0290 Durio zibethinus HOM05D007170 ORTHO05D009243 9.2e-160 567.4 398 71.6
Gohir.D07G192100 Gossypium hirsutum HOM05D007170 ORTHO05D009243 3.9e-158 562.0 398 71.9
Thecc.01G177100 Theobroma cacao HOM05D007170 ORTHO05D009243 6.6e-158 561.2 398 71.4
GSVIVG01020797001 Vitis vinifera HOM05D007170 ORTHO05D009243 2.5e-157 559.3 403 70.5
Prupe.3G191100 Prunus persica HOM05D007170 ORTHO05D009243 9.5e-157 557.4 407 70.8
MD09G1135500 Malus domestica HOM05D007170 ORTHO05D009243 4.7e-156 555.1 407 69.0
CiPaw.03G198500 Carya illinoinensis HOM05D007170 ORTHO05D009243 2.0e-154 549.7 398 69.8
RcHm_v2.0_Chr2g0154431 Rosa chinensis HOM05D007170 ORTHO05D009243 4.4e-154 548.5 397 70.3
Gorai.001G214900 Gossypium raimondii HOM05D007170 ORTHO05D009243 7.6e-154 547.7 398 70.9
FAN02G4004 Fragaria x ananassa HOM05D007170 ORTHO05D009243 9.9e-154 547.4 406 69.0
Ciclev10010909m.g Citrus clementina HOM05D007170 ORTHO05D009243 2.9e-153 545.8 398 69.3
Nn3g20634 Nelumbo nucifera HOM05D007170 ORTHO05D009243 6.4e-153 544.7 397 69.3
TAR626G1158 Trochodendron aralioides HOM05D007170 ORTHO05D009243 8.4e-153 544.3 398 69.8
FvH4_6g39900 Fragaria vesca HOM05D007170 ORTHO05D009243 1.4e-152 543.5 398 69.6
FAN14G4936 Fragaria x ananassa HOM05D007170 ORTHO05D009243 5.4e-152 541.6 406 68.2
Hma1.2p1_0892F.1_g233440 Hydrangea macrophylla HOM05D007170 ORTHO05D009243 4.6e-151 538.5 397 70.0
Potri.006G023500 Populus trichocarpa HOM05D007170 ORTHO05D009243 6.0e-151 538.1 400 68.8
Sabra06G0017000 Salix brachista HOM05D007170 ORTHO05D009243 1.3e-150 537.0 400 68.8
Atru.chr8.950 Acer truncatum HOM05D007170 ORTHO05D009243 1.2e-148 530.4 412 66.3
CANSAT64G1590 Cannabis sativa HOM05D007170 ORTHO05D009243 2.4e-147 526.2 397 68.0
Sc07g0002130 Simmondsia chinensis HOM05D007170 ORTHO05D009243 4.0e-147 525.4 409 64.8
Actinidia06806 Actinidia chinensis HOM05D007170 ORTHO05D009243 7.6e-146 521.2 408 64.2
Dinv20277 Davidia involucrata HOM05D007170 ORTHO05D009243 1.3e-142 510.4 407 66.3
PGR031G3275 Punica granatum HOM05D007170 ORTHO05D009243 3.0e-142 509.2 398 64.6
MBI02_g15149_MAGBIO Magnolia biondii HOM05D007170 ORTHO05D009243 6.6e-142 508.1 398 66.8
Manes.09G075018 Manihot esculenta HOM05D007170 ORTHO05D009243 6.6e-142 508.1 393 65.4
Nitab4.5_0002247g0080 Nicotiana tabacum HOM05D007170 ORTHO05D009243 7.3e-141 504.6 402 62.4
Nitab4.5_0005905g0020 Nicotiana tabacum HOM05D007170 ORTHO05D009243 3.4e-138 495.7 402 61.4
Solyc01g097110.2 Solanum lycopersicum HOM05D007170 ORTHO05D009243 1.7e-137 493.4 415 59.5
Peaxi162Scf00647g00012 Petunia axillaris HOM05D007170 ORTHO05D009243 2.2e-137 493.0 431 58.9
Sopen01g040790 Solanum pennellii HOM05D007170 ORTHO05D009243 3.8e-137 492.3 415 59.3
Cpa.g.sc8.299 Carica papaya HOM05D007170 ORTHO05D009243 4.2e-136 488.8 403 63.3
PSO675G2674 Papaver somniferum HOM05D007170 ORTHO05D009243 9.3e-136 487.6 393 62.3
DCAR_006644 Daucus carota HOM05D007170 ORTHO05D009243 2.1e-135 486.5 401 62.3
Lsat_1_v5_gn_2_66140 Lactuca sativa HOM05D007170 ORTHO05D009243 3.5e-135 485.7 400 61.5
CAN.G134.71 Capsicum annuum HOM05D007170 ORTHO05D009243 1.0e-134 484.2 417 58.8
Oeu038464.1 Olea europaea HOM05D007170 ORTHO05D009243 1.0e-134 484.2 401 62.1
PSO541G2476 Papaver somniferum HOM05D007170 ORTHO05D009243 3.0e-134 482.6 393 61.8
Migut.B01114 Erythranthe guttata HOM05D007170 ORTHO05D009243 6.7e-134 481.5 402 61.9
HanXRQChr10g0314771 Helianthus annuus HOM05D007170 ORTHO05D009243 6.7e-134 481.5 400 60.5
SalBow8G4071 Salvia bowleyana HOM05D007170 ORTHO05D009243 1.2e-130 470.7 401 60.1
Cc02_g31000 Coffea canephora HOM05D007170 ORTHO05D009243 2.9e-129 466.1 411 57.9
Eucgr.A00891 Eucalyptus grandis HOM05D007170 ORTHO05D009243 4.9e-129 465.3 366 64.8
SGA_v2.0_scaffold172G38980 Striga asiatica HOM05D007170 ORTHO05D009243 4.9e-129 465.3 408 59.6
ATR1098G002 Amborella trichopoda HOM05D007170 ORTHO05D009243 4.2e-128 462.2 395 59.5
Aqoxy3G00362 Aquilegia oxysepala HOM05D007170 ORTHO05D009243 6.7e-126 454.9 393 60.1
Zm00001eb117500 Zea mays HOM05D007170 ORTHO05D009243 1.4e-123 447.2 403 56.3
HPP92_019550 Vanilla planifolia HOM05D007170 ORTHO05D009243 1.5e-122 443.7 394 56.3
Os07g0154400 Oryza sativa ssp. japonica HOM05D007170 ORTHO05D009243 2.0e-122 443.4 391 58.1
ECA238G4341 Erigeron canadensis HOM05D007170 ORTHO05D009243 4.2e-112 409.1 343 60.3
Lj7A482G28 Lonicera japonica HOM05D007170 ORTHO05D009243 7.4e-101 371.7 401 51.1
Pp3c3_20180 Physcomitrium patens HOM05D007170 ORTHO05D009243 3.9e-94 349.4 403 44.9
Mapoly0001s0378 Marchantia polymorpha HOM05D007170 ORTHO05D009243 2.4e-91 340.1 397 44.6
CSS0002264 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 6.7e-86 322.0 255 64.3
CSS0006494 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 6.7e-86 322.0 255 64.3
CSS0034103 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 6.7e-86 322.0 255 64.7
CBR_g3147 Chara braunii HOM05D007170 ORTHO05D009243 7.7e-82 308.5 414 40.1
SEGI_23823 Sequoiadendron giganteum HOM05D007170 ORTHO05D009243 1.8e-67 260.8 280 49.3
CDE07G1176 Ceratophyllum demersum HOM05D007170 ORTHO05D009243 1.3e-41 174.9 150 62.0
SEGI_21897 Sequoiadendron giganteum HOM05D007170 ORTHO05D009243 9.2e-35 152.1 133 56.4
AagrBONN_evm.TU.Sc2ySwM_344.1322 Anthoceros agrestis HOM05D007170 ORTHO05D009243 3.0e-33 147.1 175 40.6
MBI08_g17991_MAGBIO Magnolia biondii HOM05D007170 ORTHO05D009243 7.9e-18 95.9 81 60.5
Lj7C724G9 Lonicera japonica HOM05D003337 ORTHO05D003808 6.2e-07 59.7 389 20.8
TAR365G0197 Trochodendron aralioides HOM05D000751 ORTHO05D000889 8.2e-07 59.3 45 64.4
Cre10.g453650 Chlamydomonas reinhardtii HOM05D007170 ORTHO05D009243 1.1e-06 58.9 179 24.6
DCAR_001543 Daucus carota HOM05D003337 ORTHO05D003808 9.0e-06 55.8 398 21.1


User provided reference genes

Program Settings