Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR221470 Cardamine hirsuta HOM05D007425 ORTHO05D009334 4.4e-84 314.7 173 100.0
AL7G40980 Arabidopsis lyrata HOM05D007425 ORTHO05D009334 7.3e-71 270.8 178 86.5
Sp7g13010 Schrenkiella parvula HOM05D007425 ORTHO05D009334 1.1e-63 246.9 182 81.9
BraA01t02180Z Brassica rapa HOM05D007425 ORTHO05D009334 1.3e-62 243.4 175 81.1
BcaNung00324 Brassica carinata HOM05D007425 ORTHO05D009334 1.1e-61 240.4 181 79.6
Carub.0007s2724 Capsella rubella HOM05D007425 ORTHO05D009334 1.8e-61 239.6 178 79.2
C01p28260 Brassica napus HOM05D007425 ORTHO05D009334 6.9e-61 237.7 177 79.1
AT4G14870 Arabidopsis thaliana HOM05D007425 ORTHO05D009334 1.2e-60 236.9 178 79.8
BcaC09g50166 Brassica carinata HOM05D007425 ORTHO05D009334 2.0e-60 236.1 177 78.5
BolC1t02755H Brassica oleracea HOM05D007425 ORTHO05D009334 2.0e-60 236.1 177 78.5
Aa31LG9G2430 Aethionema arabicum HOM05D007425 ORTHO05D009334 1.9e-55 219.5 183 72.1
Thhalv10026366m.g Eutrema salsugineum HOM05D007425 ORTHO05D009334 5.3e-53 211.5 181 72.4
THA.LOC104822268 Tarenaya hassleriana HOM05D007425 ORTHO05D009334 1.5e-44 183.3 188 63.3
THA.LOC104803027 Tarenaya hassleriana HOM05D007425 ORTHO05D009334 3.8e-43 178.7 187 65.8
CANSAT78G0262 Cannabis sativa HOM05D007425 ORTHO05D009334 4.4e-31 138.7 161 52.8
Atru.chr4.2458 Acer truncatum HOM05D007425 ORTHO05D009334 7.4e-31 137.9 166 53.0
MD13G1193800 Malus domestica HOM05D007425 ORTHO05D009334 3.1e-29 132.5 175 50.3
Nn4g26476 Nelumbo nucifera HOM05D007425 ORTHO05D009334 4.1e-29 132.1 177 49.2
RcHm_v2.0_Chr7g0190521 Rosa chinensis HOM05D007425 ORTHO05D009334 7.0e-29 131.3 155 54.2
Gohir.A09G216200 Gossypium hirsutum HOM05D007425 ORTHO05D009334 1.2e-28 130.6 176 51.1
Prupe.1G014400 Prunus persica HOM05D007425 ORTHO05D009334 1.2e-28 130.6 176 52.8
Cpa.g.sc9.287 Carica papaya HOM05D007425 ORTHO05D009334 2.0e-28 129.8 151 53.6
FAN13G1551 Fragaria x ananassa HOM05D007425 ORTHO05D009334 2.0e-28 129.8 138 58.7
PGR142G3696 Punica granatum HOM05D007425 ORTHO05D009334 2.0e-28 129.8 126 61.1
Gohir.D09G218600 Gossypium hirsutum HOM05D007425 ORTHO05D009334 2.6e-28 129.4 176 50.6
Thecc.04G232500 Theobroma cacao HOM05D007425 ORTHO05D009334 2.6e-28 129.4 158 52.5
Gorai.006G239600 Gossypium raimondii HOM05D007425 ORTHO05D009334 3.5e-28 129.0 176 50.6
MD16G1194500 Malus domestica HOM05D007425 ORTHO05D009334 4.5e-28 128.6 176 51.1
Duzib151G0901 Durio zibethinus HOM05D007425 ORTHO05D009334 7.7e-28 127.9 155 52.3
Duzib212G0056 Durio zibethinus HOM05D007425 ORTHO05D009334 7.7e-28 127.9 155 52.9
TAR636G0682 Trochodendron aralioides HOM05D007425 ORTHO05D009334 1.0e-27 127.5 181 51.9
Lj3P734T17 Lonicera japonica HOM05D007425 ORTHO05D009334 3.8e-27 125.6 157 51.6
Oeu031224.1 Olea europaea HOM05D007425 ORTHO05D009334 6.5e-27 124.8 133 55.6
Oeu031227.1 Olea europaea HOM05D007425 ORTHO05D009334 6.5e-27 124.8 133 55.6
Oeu031228.1 Olea europaea HOM05D007425 ORTHO05D009334 6.5e-27 124.8 133 55.6
COL.COLO4_21483 Corchorus olitorius HOM05D007425 ORTHO05D009334 1.1e-26 124.0 188 46.8
MELO3C006532.2 Cucumis melo HOM05D007425 ORTHO05D009334 1.1e-26 124.0 143 54.5
Sed0025719 Sechium edule HOM05D007425 ORTHO05D009334 1.5e-26 123.6 148 52.0
Cfa015652 Carpinus fangiana HOM05D007425 ORTHO05D009334 2.5e-26 122.9 167 48.5
Dinv13997 Davidia involucrata HOM05D001000 ORTHO05D002976 2.5e-26 122.9 134 56.0
QL06p002223 Quercus lobata HOM05D007425 ORTHO05D009334 2.5e-26 122.9 176 50.6
CsaV3_3G013300 Cucumis sativus L. HOM05D007425 ORTHO05D009334 3.2e-26 122.5 143 53.8
Hma1.2p1_0275F.1_g110893 Hydrangea macrophylla HOM05D007425 ORTHO05D009334 3.2e-26 122.5 111 64.0
Hma1.2p1_0275F.1_g110900 Hydrangea macrophylla HOM05D007425 ORTHO05D009334 3.2e-26 122.5 111 64.0
Haze_00892 Corylus avellana HOM05D007425 ORTHO05D009334 4.2e-26 122.1 166 48.2
FAN04G2988 Fragaria x ananassa HOM05D007425 ORTHO05D009334 4.2e-26 122.1 144 55.6
Rhsim04G0201800 Rhododendron simsii HOM05D007425 ORTHO05D009334 4.2e-26 122.1 158 48.7
Cc03_g03840 Coffea canephora HOM05D007425 ORTHO05D009334 5.5e-26 121.7 145 55.2
MSTRG.24738 Avicennia marina HOM05D007425 ORTHO05D009334 9.4e-26 120.9 126 58.7
SGA_v2.0_scaffold39G15229 Striga asiatica HOM05D007425 ORTHO05D009334 1.6e-25 120.2 126 59.5
Ah.14g089400 Amaranthus hybridus HOM05D007425 ORTHO05D009334 3.6e-25 119.0 140 52.9
DCAR_002385 Daucus carota HOM05D007425 ORTHO05D009334 3.6e-25 119.0 152 50.7
Nitab4.5_0004258g0010 Nicotiana tabacum HOM05D007425 ORTHO05D009334 3.6e-25 119.0 108 65.7
Migut.G00341 Erythranthe guttata HOM05D007425 ORTHO05D009334 4.7e-25 118.6 120 60.0
Potri.008G153400 Populus trichocarpa HOM05D007425 ORTHO05D009334 4.7e-25 118.6 128 60.2
Manes.03G178200 Manihot esculenta HOM05D007425 ORTHO05D009334 8.0e-25 117.9 176 45.5
Sopen09g030940 Solanum pennellii HOM05D007425 ORTHO05D009334 8.0e-25 117.9 106 65.1
SalBow3G4464 Salvia bowleyana HOM05D007425 ORTHO05D009334 1.4e-24 117.1 159 50.3
CiPaw.01G166700 Carya illinoinensis HOM05D007425 ORTHO05D009334 1.8e-24 116.7 179 47.5
PGSC0003DMG400032277 Solanum tuberosum HOM05D007425 ORTHO05D009334 2.3e-24 116.3 102 65.7
EL10Ac3g06446 Beta vulgaris HOM05D007425 ORTHO05D009334 3.0e-24 115.9 112 58.0
CSS0011351 Camellia sinensis var. sinensis HOM05D007425 ORTHO05D009334 4.0e-24 115.5 111 59.5
Sabra08G0117000 Salix brachista HOM05D007425 ORTHO05D009334 8.8e-24 114.4 172 47.1
Eucgr.L02493 Eucalyptus grandis HOM05D007425 ORTHO05D009334 1.1e-23 114.0 128 53.1
AUR62033636 Chenopodium quinoa HOM05D007425 ORTHO05D009334 1.5e-23 113.6 164 47.6
FvH4_5g07900 Fragaria vesca HOM05D007425 ORTHO05D009334 1.5e-23 113.6 116 59.5
FAN18G2754 Fragaria x ananassa HOM05D007425 ORTHO05D009334 1.5e-23 113.6 116 59.5
Eucgr.L01274 Eucalyptus grandis HOM05D007425 ORTHO05D009334 2.0e-23 113.2 133 53.4
HanXRQChr08g0229221 Helianthus annuus HOM05D007425 ORTHO05D009334 2.0e-23 113.2 91 70.3
Sed0000110 Sechium edule HOM05D007425 ORTHO05D009334 2.0e-23 113.2 141 50.4
Eucgr.B01085 Eucalyptus grandis HOM05D007425 ORTHO05D009334 2.6e-23 112.8 143 49.7
VMungo1215G1239 Vigna mungo HOM05D007425 ORTHO05D009334 2.6e-23 112.8 166 53.0
Sc13g0004450 Simmondsia chinensis HOM05D007425 ORTHO05D009334 7.5e-23 111.3 168 47.6
Lsat_1_v5_gn_9_18440 Lactuca sativa HOM05D007425 ORTHO05D009334 2.2e-22 109.8 91 65.9
Ciclev10006055m.g Citrus clementina HOM05D007425 ORTHO05D009334 3.7e-22 109.0 70 78.6
LjContig00408g0025154 Lotus japonicus HOM05D007425 ORTHO05D009334 4.8e-22 108.6 105 56.2
PSO017G2433 Papaver somniferum HOM05D007425 ORTHO05D009334 6.3e-22 108.2 147 49.0
PSO170G1990 Papaver somniferum HOM05D007425 ORTHO05D009334 6.3e-22 108.2 127 55.9
Phvul.002G045100 Phaseolus vulgaris HOM05D007425 ORTHO05D009334 6.3e-22 108.2 87 67.8
Nitab4.5_0000043g0080 Nicotiana tabacum HOM05D007425 ORTHO05D009334 1.1e-21 107.5 100 65.0
Zm00001eb375110 Zea mays HOM05D007425 ORTHO05D009334 1.4e-21 107.1 136 49.3
ECA247G1832 Erigeron canadensis HOM05D007425 ORTHO05D009334 1.8e-21 106.7 91 64.8
arahy.Tifrunner.gnm1.ann1.CGGZ98 Arachis hypogaea HOM05D007425 ORTHO05D009334 2.4e-21 106.3 87 64.4
CAN.G490.15 Capsicum annuum HOM05D007425 ORTHO05D009334 3.1e-21 105.9 72 76.4
Glyma.01G237800 Glycine max HOM05D007425 ORTHO05D009334 3.1e-21 105.9 120 55.8
unitig_32.g10818 Utricularia gibba HOM05D007425 ORTHO05D009334 2.6e-20 102.8 126 51.6
TAR636G0596 Trochodendron aralioides HOM05D007425 ORTHO05D009334 4.5e-20 102.1 67 76.1
HPP92_010419 Vanilla planifolia HOM05D007425 ORTHO05D009334 4.5e-20 102.1 151 46.4
Aqoxy7G02632 Aquilegia oxysepala HOM05D007425 ORTHO05D009334 5.9e-20 101.7 182 41.2
MBI16_g00841_MAGBIO Magnolia biondii HOM05D007425 ORTHO05D009334 5.9e-20 101.7 95 65.3
CDE04G2079 Ceratophyllum demersum HOM05D007425 ORTHO05D009334 5.0e-19 98.6 60 80.0
Medtr5g038520 Medicago truncatula HOM05D007425 ORTHO05D009334 6.5e-19 98.2 139 45.3
ATR0626G045 Amborella trichopoda HOM05D007425 ORTHO05D009334 8.5e-19 97.8 68 72.1
Psat2g124560 Pisum sativum HOM05D007425 ORTHO05D009334 1.1e-18 97.4 153 45.8
Ca_04746_v3 Cicer arietinum L. HOM05D007425 ORTHO05D009334 1.9e-18 96.7 79 67.1
SGA_v2.0_scaffold52G19002 Striga asiatica HOM05D006387 ORTHO05D008533 7.2e-18 94.7 74 73.0
Lalb_Chr05g0211001 Lupinus albus HOM05D007425 ORTHO05D009334 2.7e-17 92.8 87 56.3
Os04g0306750 Oryza sativa ssp. japonica HOM05D007425 ORTHO05D009334 1.2e-15 87.4 60 71.7
SEGI_06187 Sequoiadendron giganteum HOM05D007425 ORTHO05D009334 2.6e-15 86.3 66 66.7
Pp3c2_27330 Physcomitrium patens HOM05D007425 ORTHO05D009334 2.7e-12 76.3 145 38.6
Mapoly0070s0085 Marchantia polymorpha HOM05D007425 ORTHO05D009334 2.9e-11 72.8 120 44.2
AUR62034746 Chenopodium quinoa HOM05D007425 ORTHO05D009334 5.0e-11 72.0 139 40.3
Os08g0399050 Oryza sativa ssp. japonica HOM05D007425 ORTHO05D009334 4.7e-09 65.5 62 59.7
SMO358G0357 Selaginella moellendorffii HOM05D013303 ORTHO05D015288 1.2e-07 60.8 151 38.4


User provided reference genes

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