Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR220820 Cardamine hirsuta HOM05D002030 ORTHO05D007413 2.1e-299 1031.6 520 100.0
AL7G41540 Arabidopsis lyrata HOM05D002030 ORTHO05D007413 7.2e-231 803.9 489 82.0
Carub.0007s2761 Capsella rubella HOM05D002030 ORTHO05D007413 9.5e-223 776.9 492 78.0
AT4G14590 Arabidopsis thaliana HOM05D002030 ORTHO05D007413 1.7e-219 766.1 489 79.3
Sp7g12690 Schrenkiella parvula HOM05D002030 ORTHO05D007413 2.3e-216 755.7 492 77.6
BraA03t11180Z Brassica rapa HOM05D002030 ORTHO05D007413 7.3e-215 750.7 447 81.7
A03p19250 Brassica napus HOM05D002030 ORTHO05D007413 9.5e-215 750.4 447 81.9
Thhalv10017599m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 2.8e-214 748.8 460 79.8
BolC3t14628H Brassica oleracea HOM05D002030 ORTHO05D007413 2.1e-209 732.6 447 79.4
C03p22450 Brassica napus HOM05D002030 ORTHO05D007413 4.6e-209 731.5 447 79.2
Aa31LG9G2740 Aethionema arabicum HOM05D002030 ORTHO05D007413 1.5e-207 726.5 496 73.4
Thhalv10027440m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 4.3e-207 724.9 459 77.6
BcaC08g44279 Brassica carinata HOM05D002030 ORTHO05D007413 4.0e-189 665.2 472 73.1
C06p16980 Brassica napus HOM05D002030 ORTHO05D007413 4.0e-189 665.2 472 73.1
THA.LOC104800445 Tarenaya hassleriana HOM05D002030 ORTHO05D007413 6.7e-176 621.3 494 63.6
CiPaw.06G055000 Carya illinoinensis HOM05D002030 ORTHO05D007413 1.0e-160 570.9 458 60.7
Ciclev10018312m.g Citrus clementina HOM05D002030 ORTHO05D007413 1.5e-159 567.0 500 57.4
Duzib168G1726 Durio zibethinus HOM05D002030 ORTHO05D007413 1.9e-159 566.6 465 60.4
Haze_02982 Corylus avellana HOM05D002030 ORTHO05D007413 3.3e-159 565.8 453 61.4
Cfa010958 Carpinus fangiana HOM05D002030 ORTHO05D007413 1.6e-158 563.5 453 60.9
COL.COLO4_33273 Corchorus olitorius HOM05D002030 ORTHO05D007413 1.4e-157 560.5 457 61.5
Cpa.g.sc529.1 Carica papaya HOM05D002030 ORTHO05D007413 1.8e-157 560.1 458 60.9
TWI09G0205 Tripterygium wilfordii HOM05D002030 ORTHO05D007413 3.4e-156 555.8 488 55.7
Dinv05065 Davidia involucrata HOM05D002030 ORTHO05D007413 2.2e-155 553.1 491 56.6
Cfa019819 Carpinus fangiana HOM05D002030 ORTHO05D007413 5.0e-155 552.0 453 60.0
Gohir.A05G071600 Gossypium hirsutum HOM05D002030 ORTHO05D007413 5.0e-155 552.0 465 59.4
QL04p021544 Quercus lobata HOM05D002030 ORTHO05D007413 1.1e-154 550.8 458 59.0
Atru.chr3.2803 Acer truncatum HOM05D002030 ORTHO05D007413 1.9e-154 550.1 456 61.0
Potri.001G277200 Populus trichocarpa HOM05D002030 ORTHO05D007413 3.2e-154 549.3 490 55.9
CANSAT25G2826 Cannabis sativa HOM05D002030 ORTHO05D007413 2.7e-153 546.2 458 57.9
Manes.02G141000 Manihot esculenta HOM05D002030 ORTHO05D007413 1.0e-152 544.3 459 59.9
MD11G1194100 Malus domestica HOM05D002030 ORTHO05D007413 4.3e-151 538.9 457 56.5
CSS0014605 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 3.7e-150 535.8 461 57.5
CSS0026005 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 3.7e-150 535.8 461 57.5
Lalb_Chr02g0151181 Lupinus albus HOM05D002030 ORTHO05D007413 8.2e-150 534.6 460 57.4
Psat4g003440 Pisum sativum HOM05D002030 ORTHO05D007413 4.1e-149 532.3 456 56.1
Sabra16G0171300 Salix brachista HOM05D002030 ORTHO05D007413 4.1e-149 532.3 495 53.7
Gorai.009G075600 Gossypium raimondii HOM05D002030 ORTHO05D007413 5.3e-149 531.9 465 58.3
Prupe.1G578000 Prunus persica HOM05D002030 ORTHO05D007413 9.1e-149 531.2 456 57.7
Hma1.2p1_0872F.1_g231160 Hydrangea macrophylla HOM05D002030 ORTHO05D007413 1.2e-148 530.8 492 55.3
RcHm_v2.0_Chr6g0267091 Rosa chinensis HOM05D002030 ORTHO05D007413 1.5e-148 530.4 456 56.8
Rhsim13G0212600 Rhododendron simsii HOM05D002030 ORTHO05D007413 7.7e-148 528.1 458 56.1
CsaV3_1G043250 Cucumis sativus L. HOM05D002030 ORTHO05D007413 6.5e-147 525.0 465 56.8
Medtr4g132910 Medicago truncatula HOM05D002030 ORTHO05D007413 3.2e-146 522.7 453 56.1
Cc01_g00100 Coffea canephora HOM05D002030 ORTHO05D007413 5.5e-146 521.9 453 58.1
Lj5g0021026 Lotus japonicus HOM05D002030 ORTHO05D007413 5.5e-146 521.9 457 55.6
MSTRG.19666 Avicennia marina HOM05D002030 ORTHO05D007413 9.4e-146 521.2 457 55.6
MELO3C015133.2 Cucumis melo HOM05D002030 ORTHO05D007413 1.2e-145 520.8 465 56.6
TAR628G0894 Trochodendron aralioides HOM05D002030 ORTHO05D007413 2.1e-145 520.0 502 53.4
HanXRQChr10g0319281 Helianthus annuus HOM05D002030 ORTHO05D007413 6.1e-145 518.5 466 53.9
MD15G1397300 Malus domestica HOM05D002030 ORTHO05D007413 7.9e-145 518.1 450 55.8
Oeu024896.1 Olea europaea HOM05D002030 ORTHO05D007413 1.4e-144 517.3 473 55.2
AUR62039829 Chenopodium quinoa HOM05D002030 ORTHO05D004391 3.0e-144 516.2 469 55.7
SHI24995 Sapria himalayana HOM05D002030 ORTHO05D007413 2.0e-143 513.5 467 55.5
ClCG03G012710 Citrullus lanatus HOM05D002030 ORTHO05D007413 1.3e-142 510.8 515 52.0
Phvul.007G141800 Phaseolus vulgaris HOM05D002030 ORTHO05D007413 2.2e-142 510.0 453 56.5
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 2.8e-142 509.6 457 54.9
Nn7g36615 Nelumbo nucifera HOM05D002030 ORTHO05D007413 1.1e-141 507.7 504 50.0
Sc19g0005890 Simmondsia chinensis HOM05D002030 ORTHO05D007413 1.8e-141 506.9 457 53.8
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 3.1e-141 506.1 457 54.5
PSO339G1606 Papaver somniferum HOM05D002030 ORTHO05D007413 5.3e-141 505.4 496 50.4
Nitab4.5_0002358g0010 Nicotiana tabacum HOM05D002030 ORTHO05D007413 3.5e-140 502.7 456 52.9
arahy.Tifrunner.gnm1.ann1.DSBP33 Arachis hypogaea HOM05D002030 ORTHO05D007413 7.7e-140 501.5 464 54.1
arahy.Tifrunner.gnm1.ann1.59T0PU Arachis hypogaea HOM05D002030 ORTHO05D007413 1.0e-139 501.1 464 54.5
Ah.04g162000 Amaranthus hybridus HOM05D002030 ORTHO05D007413 2.2e-139 500.0 458 54.4
Peaxi162Scf00108g00034 Petunia axillaris HOM05D002030 ORTHO05D007413 2.9e-139 499.6 457 53.4
VMungo0720G1521 Vigna mungo HOM05D002030 ORTHO05D007413 8.5e-139 498.0 453 55.4
CAN.G993.31 Capsicum annuum HOM05D002030 ORTHO05D007413 7.2e-138 495.0 456 51.8
SGA_v2.0_scaffold45G17005 Striga asiatica HOM05D002030 ORTHO05D007413 9.4e-138 494.6 461 54.0
PSO384G3354 Papaver somniferum HOM05D002030 ORTHO05D007413 2.1e-137 493.4 476 50.8
Lsat_1_v5_gn_5_164660 Lactuca sativa HOM05D002030 ORTHO05D007413 2.7e-137 493.0 461 54.0
FvH4_3g28960 Fragaria vesca HOM05D002030 ORTHO05D007413 4.7e-137 492.3 456 53.9
PGSC0003DMG401026992 Solanum tuberosum HOM05D002030 ORTHO05D007413 2.3e-136 490.0 430 54.4
Sopen06g027940 Solanum pennellii HOM05D002030 ORTHO05D007413 1.1e-135 487.6 460 52.0
Thecc.09G250300 Theobroma cacao HOM05D002030 ORTHO05D007413 3.3e-135 486.1 383 62.7
Migut.J01395 Erythranthe guttata HOM05D002030 ORTHO05D007413 4.4e-135 485.7 466 53.2
Solyc06g071630.2 Solanum lycopersicum HOM05D002030 ORTHO05D007413 9.7e-135 484.6 460 51.5
unitig_0.g561 Utricularia gibba HOM05D002030 ORTHO05D007413 4.8e-134 482.3 458 52.8
Lj4P151T58 Lonicera japonica HOM05D002030 ORTHO05D007413 1.1e-133 481.1 451 55.0
MBI03_g13094_MAGBIO Magnolia biondii HOM05D002030 ORTHO05D007413 1.0e-131 474.6 480 50.6
RcHm_v2.0_Chr2g0127281 Rosa chinensis HOM05D002030 ORTHO05D007413 1.0e-131 474.6 456 51.5
Aqoxy1G00344 Aquilegia oxysepala HOM05D002030 ORTHO05D007413 1.5e-130 470.7 490 47.6
AUR62000179 Chenopodium quinoa HOM05D002030 ORTHO05D007413 1.2e-127 461.1 457 52.7
Glyma.20G191000 Glycine max HOM05D002030 ORTHO05D007413 7.5e-127 458.4 468 52.1
ATR0693G336 Amborella trichopoda HOM05D002030 ORTHO05D007413 2.2e-118 430.3 457 46.2
Ca_21049_v3 Cicer arietinum L. HOM05D002030 ORTHO05D007413 5.4e-117 425.6 451 49.7
PGR102G2312 Punica granatum HOM05D002030 ORTHO05D007413 5.4e-117 425.6 425 50.8
HPP92_008257 Vanilla planifolia HOM05D002030 ORTHO05D007413 2.9e-115 419.9 457 44.9
TPR.G37056 Trifolium pratense HOM05D002030 ORTHO05D007413 4.7e-113 412.5 372 54.0
RcHm_v2.0_Chr6g0255981 Rosa chinensis HOM05D002030 ORTHO05D007413 2.3e-112 410.2 347 57.1
BolC6t36898H Brassica oleracea HOM05D002030 ORTHO05D007413 4.1e-109 399.4 471 52.9
Actinidia06954 Actinidia chinensis HOM05D002030 ORTHO05D007413 4.6e-108 396.0 342 57.3
Mapoly0033s0111 Marchantia polymorpha HOM05D002030 ORTHO05D007413 4.3e-106 389.4 446 43.5
Peaxi162Scf00177g00919 Petunia axillaris HOM05D002030 ORTHO05D007413 8.9e-104 381.7 356 52.2
GSVIVG01037252001 Vitis vinifera HOM05D002030 ORTHO05D007413 1.2e-103 381.3 484 44.8
ECA248G2873 Erigeron canadensis HOM05D002030 ORTHO05D007413 2.0e-103 380.6 406 50.5
AagrBONN_evm.TU.Sc2ySwM_368.2374 Anthoceros agrestis HOM05D002030 ORTHO05D007413 1.2e-97 361.3 505 39.6
SEGI_26527 Sequoiadendron giganteum HOM05D002030 ORTHO05D007413 2.8e-97 360.1 469 41.8
arahy.Tifrunner.gnm1.ann1.G6N61A Arachis hypogaea HOM05D002030 ORTHO05D007413 4.0e-96 356.3 375 49.3
Pp3c16_4000 Physcomitrium patens HOM05D002030 ORTHO05D007413 2.0e-95 354.0 468 40.4
Rhsim13G0218500 Rhododendron simsii HOM05D002030 ORTHO05D007413 2.4e-93 347.1 475 41.5
SMO141G0167 Selaginella moellendorffii HOM05D002030 ORTHO05D007413 2.4e-93 347.1 469 39.7
BcaC01g05780 Brassica carinata HOM05D002030 ORTHO05D007413 3.0e-91 340.1 210 78.6
PSO478G2842 Papaver somniferum HOM05D002030 ORTHO05D007413 4.7e-89 332.8 362 48.6
Gohir.D05G074500 Gossypium hirsutum HOM05D002030 ORTHO05D007413 3.7e-86 323.2 276 58.0
CDE02G3397 Ceratophyllum demersum HOM05D002030 ORTHO05D007413 3.2e-85 320.1 310 51.0
Eucgr.B03727 Eucalyptus grandis HOM05D002030 ORTHO05D007413 3.2e-85 320.1 436 41.7
Cc04_g16190 Coffea canephora HOM05D002030 ORTHO05D007413 3.3e-82 310.1 442 41.2
HanXRQChr14g0432371 Helianthus annuus HOM05D002030 ORTHO05D007413 6.2e-81 305.8 358 45.0
CBR_g18996 Chara braunii HOM05D002030 ORTHO05D007413 2.2e-78 297.4 417 38.1
CSS0011008 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 7.1e-69 265.8 237 56.5
COL.COLO4_19604 Corchorus olitorius HOM05D002030 ORTHO05D007413 1.8e-59 234.6 194 60.8
Zm00001eb091720 Zea mays HOM05D002030 ORTHO05D007413 5.6e-58 229.6 309 39.8
Atru.chr1.1605 Acer truncatum HOM05D002030 ORTHO05D007413 1.4e-56 224.9 176 61.4
Os11g0171400 Oryza sativa ssp. japonica HOM05D002030 ORTHO05D007413 9.0e-56 222.2 283 40.6
BcaC01g05781 Brassica carinata HOM05D002030 ORTHO05D007413 7.6e-55 219.2 124 79.0
Nitab4.5_0001515g0060 Nicotiana tabacum HOM05D002030 ORTHO05D007413 1.1e-53 215.3 170 59.4
Sed0013906 Sechium edule HOM05D002030 ORTHO05D007413 1.1e-53 215.3 249 46.6
DCAR_031630 Daucus carota HOM05D002030 ORTHO05D007413 1.1e-42 178.7 145 58.6
FAN21G2573 Fragaria x ananassa HOM05D002030 ORTHO05D007413 1.8e-40 171.4 173 50.3
MD00G1154100 Malus domestica HOM05D002030 ORTHO05D007413 6.7e-27 126.3 121 48.8
Glyma.10G199232 Glycine max HOM05D002030 ORTHO05D007413 4.0e-19 100.5 128 42.2
Nitab4.5_0001515g0100 Nicotiana tabacum HOM05D002030 ORTHO05D007413 2.2e-17 94.7 65 60.0
Sc16g0005130 Simmondsia chinensis HOM05D002030 ORTHO05D007413 1.6e-07 62.0 79 41.8
Medtr4g132950 Medicago truncatula HOM05D002030 ORTHO05D007413 2.0e-07 61.6 79 38.0


User provided reference genes

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