Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR220570 Cardamine hirsuta HOM05D002567 ORTHO05D007435 3.4e-43 177.9 90 100.0
BcaB01g03155 Brassica carinata HOM05D002567 ORTHO05D007435 1.2e-24 116.3 95 68.4
Carub.0004s3055 Capsella rubella HOM05D002567 ORTHO05D007435 1.2e-24 116.3 95 68.4
CARHR143220 Cardamine hirsuta HOM05D002567 ORTHO05D007435 4.6e-24 114.4 95 67.4
Sp4g29760 Schrenkiella parvula HOM05D002567 ORTHO05D007435 4.6e-24 114.4 95 67.4
A03p26080 Brassica napus HOM05D002567 ORTHO05D007435 6.0e-24 114.0 95 67.4
C03p31100 Brassica napus HOM05D002567 ORTHO05D007435 6.0e-24 114.0 95 67.4
BolC3t15458H Brassica oleracea HOM05D002567 ORTHO05D007435 6.0e-24 114.0 95 67.4
BraA03t11823Z Brassica rapa HOM05D002567 ORTHO05D007435 6.0e-24 114.0 95 67.4
Thhalv10001431m.g Eutrema salsugineum HOM05D002567 ORTHO05D007435 1.0e-23 113.2 95 67.4
Aa31LG1G29180 Aethionema arabicum HOM05D002567 ORTHO05D007435 2.3e-23 112.1 95 65.3
BcaC01g05016 Brassica carinata HOM05D002567 ORTHO05D007435 3.9e-23 111.3 95 66.3
AT2G47830 Arabidopsis thaliana HOM05D002567 ORTHO05D007435 1.1e-22 109.8 95 64.2
AL4G47410 Arabidopsis lyrata HOM05D002567 ORTHO05D007435 4.3e-22 107.8 95 63.2
Ciclev10019856m.g Citrus clementina HOM05D002567 ORTHO05D007435 1.8e-20 102.4 95 61.1
COL.COLO4_07998 Corchorus olitorius HOM05D002567 ORTHO05D006538 4.0e-20 101.3 95 64.2
MD03G1284200 Malus domestica HOM05D002567 ORTHO05D007435 4.0e-20 101.3 95 58.9
Hma1.2p1_0399F.1_g143930 Hydrangea macrophylla HOM05D002567 ORTHO05D007435 5.2e-20 100.9 95 57.9
Thecc.01G294000 Theobroma cacao HOM05D002567 ORTHO05D007435 5.2e-20 100.9 95 63.2
TWI14G0999 Tripterygium wilfordii HOM05D002567 ORTHO05D007435 5.2e-20 100.9 95 61.1
Cpa.g.sc9.190 Carica papaya HOM05D002567 ORTHO05D007435 8.9e-20 100.1 95 60.0
THA.LOC104817512 Tarenaya hassleriana HOM05D002567 ORTHO05D007435 8.9e-20 100.1 95 61.1
Eucgr.K03452 Eucalyptus grandis HOM05D002567 ORTHO05D007435 2.6e-19 98.6 95 61.1
FvH4_c6g00080 Fragaria vesca HOM05D002567 ORTHO05D007435 3.4e-19 98.2 95 57.9
Gohir.A08G074500 Gossypium hirsutum HOM05D002567 ORTHO05D007435 3.4e-19 98.2 95 61.1
CsaV3_7G028940 Cucumis sativus L. HOM05D002567 ORTHO05D007435 4.4e-19 97.8 95 60.0
Lj5g0023248 Lotus japonicus HOM05D002567 ORTHO05D007435 4.4e-19 97.8 95 57.9
Prupe.8G255700 Prunus persica HOM05D002567 ORTHO05D007435 4.4e-19 97.8 95 60.0
Dinv19731 Davidia involucrata HOM05D002567 ORTHO05D007435 5.8e-19 97.4 95 56.8
Potri.002G209023 Populus trichocarpa HOM05D002567 ORTHO05D007435 5.8e-19 97.4 95 58.9
CARHR055860 Cardamine hirsuta HOM05D002567 ORTHO05D007435 7.6e-19 97.1 87 62.1
Gohir.D08G083800 Gossypium hirsutum HOM05D002567 ORTHO05D007435 9.9e-19 96.7 95 60.0
Gorai.004G088200 Gossypium raimondii HOM05D002567 ORTHO05D007435 9.9e-19 96.7 95 60.0
GSVIVG01010968001 Vitis vinifera HOM05D002567 ORTHO05D007435 9.9e-19 96.7 95 57.9
FvH4_c6g00110 Fragaria vesca HOM05D002567 ORTHO05D007435 1.3e-18 96.3 95 57.9
Ca_10357_v3 Cicer arietinum L. HOM05D002567 ORTHO05D007435 1.7e-18 95.9 95 58.9
Actinidia24843 Actinidia chinensis HOM05D002567 ORTHO05D007435 2.2e-18 95.5 95 57.9
Glyma.02G153800 Glycine max HOM05D002567 ORTHO05D007435 2.2e-18 95.5 95 58.9
VMungo0720G1827 Vigna mungo HOM05D002567 ORTHO05D007435 2.2e-18 95.5 95 58.9
Aqoxy5G00699 Aquilegia oxysepala HOM05D002567 ORTHO05D007435 3.8e-18 94.7 95 55.8
ClCG09G006190 Citrullus lanatus HOM05D002567 ORTHO05D007435 3.8e-18 94.7 95 58.9
Sed0025005 Sechium edule HOM05D002567 ORTHO05D007435 3.8e-18 94.7 95 58.9
Glyma.10G020300 Glycine max HOM05D002567 ORTHO05D007435 4.9e-18 94.4 95 58.9
RcHm_v2.0_Chr6g0293181 Rosa chinensis HOM05D002567 ORTHO05D007435 6.4e-18 94.0 95 56.8
Phvul.007G165166 Phaseolus vulgaris HOM05D002567 ORTHO05D007435 8.4e-18 93.6 95 57.9
Sed0015917 Sechium edule HOM05D002567 ORTHO05D007435 8.4e-18 93.6 95 56.8
Sc05g0004310 Simmondsia chinensis HOM05D002567 ORTHO05D007435 1.1e-17 93.2 95 52.6
CiPaw.07G103700 Carya illinoinensis HOM05D002567 ORTHO05D007435 1.4e-17 92.8 95 56.8
Haze_04858 Corylus avellana HOM05D002567 ORTHO05D006538 1.4e-17 92.8 95 56.8
TAR365G0282 Trochodendron aralioides HOM05D002567 ORTHO05D007435 1.4e-17 92.8 95 54.7
Manes.05G065800 Manihot esculenta HOM05D002567 ORTHO05D007435 1.9e-17 92.4 95 56.8
PGR044G2614 Punica granatum HOM05D002567 ORTHO05D007435 2.4e-17 92.0 94 58.5
Cc01_g20520 Coffea canephora HOM05D002567 ORTHO05D007435 3.2e-17 91.7 95 54.7
Lalb_Chr06g0163361 Lupinus albus HOM05D002567 ORTHO05D007435 3.2e-17 91.7 95 55.8
Rhsim01G0282400 Rhododendron simsii HOM05D002567 ORTHO05D007435 4.2e-17 91.3 95 53.7
CANSAT25G3369 Cannabis sativa HOM05D002567 ORTHO05D007435 5.4e-17 90.9 95 55.8
CSS0004593 Camellia sinensis var. sinensis HOM05D002567 ORTHO05D007435 7.1e-17 90.5 88 58.0
CSS0018114 Camellia sinensis var. sinensis HOM05D002567 ORTHO05D007435 7.1e-17 90.5 88 58.0
Cfa005987 Carpinus fangiana HOM05D002567 ORTHO05D007435 7.1e-17 90.5 95 55.8
Medtr1g088870 Medicago truncatula HOM05D002567 ORTHO05D007435 7.1e-17 90.5 95 55.8
vmacro14988 Vaccinium macrocarpon HOM05D002567 ORTHO05D007435 7.1e-17 90.5 96 54.2
ATR0706G146 Amborella trichopoda HOM05D002567 ORTHO05D007435 9.2e-17 90.1 95 50.5
TPR.G33972 Trifolium pratense HOM05D002567 ORTHO05D007435 9.2e-17 90.1 95 55.8
Nn5g30061 Nelumbo nucifera HOM05D002567 ORTHO05D007435 2.1e-16 89.0 95 50.5
PSO832G0331 Papaver somniferum HOM05D002567 ORTHO05D007435 2.1e-16 89.0 95 52.6
Hund05401 Selenicereus undatus HOM05D002567 ORTHO05D007435 2.7e-16 88.6 95 52.6
Peaxi162Scf00067g01819 Petunia axillaris HOM05D002567 ORTHO05D007435 3.5e-16 88.2 93 54.8
HanXRQChr01g0001661 Helianthus annuus HOM05D002567 ORTHO05D007435 7.8e-16 87.0 95 54.7
Atru.chr5.1230 Acer truncatum HOM05D002567 ORTHO05D007435 1.3e-15 86.3 82 61.0
Lj2C1189T5 Lonicera japonica HOM05D002567 ORTHO05D007435 1.3e-15 86.3 104 51.9
FAN20G2691 Fragaria x ananassa HOM05D002567 ORTHO05D007435 1.7e-15 85.9 113 48.7
SalBow3G3633 Salvia bowleyana HOM05D002567 ORTHO05D007435 1.7e-15 85.9 95 54.7
CDE02G2579 Ceratophyllum demersum HOM05D002567 ORTHO05D007435 2.3e-15 85.5 95 48.4
ECA248G3501 Erigeron canadensis HOM05D002567 ORTHO05D007435 3.9e-15 84.7 92 53.3
Os03g0346800 Oryza sativa ssp. japonica HOM05D002567 ORTHO05D007435 3.9e-15 84.7 95 51.6
QL12p030562 Quercus lobata HOM05D002567 ORTHO05D007435 3.9e-15 84.7 95 52.6
FAN24G0883 Fragaria x ananassa HOM05D002567 ORTHO05D007435 5.1e-15 84.3 113 47.8
Zm00001eb016640 Zea mays HOM05D002567 ORTHO05D007435 5.1e-15 84.3 94 52.1
Oeu046707.1 Olea europaea HOM05D002567 ORTHO05D007435 1.5e-14 82.8 95 51.6
Lsat_1_v5_gn_5_189341 Lactuca sativa HOM05D002567 ORTHO05D007435 1.9e-14 82.4 95 51.6
Solyc09g074750.3 Solanum lycopersicum HOM05D002567 ORTHO05D007435 1.9e-14 82.4 94 52.1
Sopen09g029600 Solanum pennellii HOM05D002567 ORTHO05D007435 1.9e-14 82.4 94 52.1
PGSC0003DMG402011364 Solanum tuberosum HOM05D002567 ORTHO05D007435 1.9e-14 82.4 94 52.1
SGA_v2.0_scaffold1G00388 Striga asiatica HOM05D002567 ORTHO05D007435 1.9e-14 82.4 94 53.2
DCAR_012404 Daucus carota HOM05D002567 ORTHO05D007435 3.3e-14 81.6 93 58.1
Migut.D00184 Erythranthe guttata HOM05D002567 ORTHO05D007435 9.6e-14 80.1 95 49.5
FAN15G3695 Fragaria x ananassa HOM05D002567 ORTHO05D007435 6.2e-13 77.4 150 37.3
Psat6g167000 Pisum sativum HOM05D002567 ORTHO05D007435 1.5e-11 72.8 75 56.0
HPP92_011840 Vanilla planifolia HOM05D002567 ORTHO05D007435 2.6e-11 72.0 81 48.1
Nitab4.5_0001697g0140 Nicotiana tabacum HOM05D002567 ORTHO05D006538 5.8e-11 70.9 135 40.0
Pp3c10_1060 Physcomitrium patens HOM05D002567 ORTHO05D007435 3.8e-10 68.2 94 41.5
SMO145G0291 Selaginella moellendorffii HOM05D002567 ORTHO05D007435 3.8e-10 68.2 95 42.1
Mapoly0007s0103 Marchantia polymorpha HOM05D002567 ORTHO05D007435 6.4e-10 67.4 94 40.4
Ah.15g093860 Amaranthus hybridus HOM05D002567 ORTHO05D007435 2.4e-09 65.5 71 54.9
Pp3c14_1830 Physcomitrium patens HOM05D002567 ORTHO05D007435 4.2e-09 64.7 94 39.4
Nitab4.5_0001447g0040 Nicotiana tabacum HOM05D002567 ORTHO05D007435 5.4e-09 64.3 92 45.7
Duzib133G1128 Durio zibethinus HOM05D002567 ORTHO05D007435 4.6e-08 61.2 91 47.3
AUR62033190 Chenopodium quinoa HOM05D002567 ORTHO05D007435 3.9e-07 58.2 90 42.2
AUR62043263 Chenopodium quinoa HOM05D002567 ORTHO05D007435 3.9e-07 58.2 90 42.2
MELO3C016044.2 Cucumis melo HOM05D002567 ORTHO05D007435 6.6e-07 57.4 91 42.9
AUR62033191 Chenopodium quinoa HOM05D002567 ORTHO05D007435 1.5e-06 56.2 90 40.0
CAN.G1562.6 Capsicum annuum HOM05D002567 ORTHO05D007435 1.9e-06 55.8 89 41.6


User provided reference genes

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