Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR220500 Cardamine hirsuta HOM05D005408 ORTHO05D006790 0.0e+00 1743.0 906 100.0
AT4G14310 Arabidopsis thaliana HOM05D005408 ORTHO05D006790 0.0e+00 1501.9 910 87.9
Carub.0007s2798 Capsella rubella HOM05D005408 ORTHO05D006790 0.0e+00 1498.4 907 86.5
AL7G41950 Arabidopsis lyrata HOM05D005408 ORTHO05D006790 0.0e+00 1477.6 910 86.4
Sp7g12340 Schrenkiella parvula HOM05D005408 ORTHO05D006790 0.0e+00 1419.1 924 82.5
Thhalv10024359m.g Eutrema salsugineum HOM05D005408 ORTHO05D006790 0.0e+00 1369.4 918 80.0
Aa31LG9G3050 Aethionema arabicum HOM05D005408 ORTHO05D006790 0.0e+00 1314.7 925 75.1
BcaNung06103 Brassica carinata HOM05D005408 ORTHO05D006790 0.0e+00 1250.3 915 76.1
A08p24350 Brassica napus HOM05D005408 ORTHO05D006790 0.0e+00 1228.4 912 75.4
C03p76860 Brassica napus HOM05D005408 ORTHO05D006790 0.0e+00 1218.8 909 75.4
BcaC01g00205 Brassica carinata HOM05D005408 ORTHO05D006790 0.0e+00 1217.6 912 74.9
BraA08t34390Z Brassica rapa HOM05D005408 ORTHO05D006790 0.0e+00 1214.5 938 73.5
BolC3t19941H Brassica oleracea HOM05D005408 ORTHO05D006790 0.0e+00 1206.8 931 73.4
THA.LOC104804761 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 0.0e+00 1130.9 921 66.4
THA.LOC104822240 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 0.0e+00 1089.3 942 64.8
Cpa.g.sc44.32 Carica papaya HOM05D005408 ORTHO05D006790 7.1e-266 921.0 960 55.7
Duzib151G0888 Durio zibethinus HOM05D005408 ORTHO05D006790 3.1e-261 905.6 941 56.1
Thecc.04G259100 Theobroma cacao HOM05D005408 ORTHO05D006790 4.4e-260 901.7 943 56.0
Dinv27073 Davidia involucrata HOM05D005408 ORTHO05D006790 3.3e-255 885.6 997 52.7
COL.COLO4_15917 Corchorus olitorius HOM05D005408 ORTHO05D006790 1.3e-251 873.6 874 56.4
Potri.010G069200 Populus trichocarpa HOM05D005408 ORTHO05D006790 1.3e-251 873.6 946 54.2
Ciclev10004264m.g Citrus clementina HOM05D005408 ORTHO05D006790 4.2e-250 868.6 924 54.8
Duzib212G0761 Durio zibethinus HOM05D005408 ORTHO05D006790 7.9e-249 864.4 943 54.1
Prupe.1G042300 Prunus persica HOM05D005408 ORTHO05D006790 1.9e-247 859.8 1002 51.6
Dinv29839 Davidia involucrata HOM05D005408 ORTHO05D006790 5.6e-247 858.2 955 52.7
QL06p019224 Quercus lobata HOM05D005408 ORTHO05D006790 2.8e-246 855.9 942 54.4
TWI09G0385 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 8.1e-246 854.4 942 52.8
GSVIVG01027854001 Vitis vinifera HOM05D005408 ORTHO05D006790 8.1e-246 854.4 923 54.3
Potri.008G169200 Populus trichocarpa HOM05D005408 ORTHO05D006790 1.1e-245 854.0 937 54.3
Manes.15G043200 Manihot esculenta HOM05D005408 ORTHO05D006790 2.4e-245 852.8 947 52.2
Atru.chr4.2004 Acer truncatum HOM05D005408 ORTHO05D006790 3.1e-245 852.4 922 53.9
Sabra10G0037900 Salix brachista HOM05D005408 ORTHO05D006790 4.5e-244 848.6 948 53.4
Actinidia20821 Actinidia chinensis HOM05D005408 ORTHO05D006790 2.9e-243 845.9 987 52.0
MD16G1222000 Malus domestica HOM05D005408 ORTHO05D006790 8.4e-243 844.3 979 51.8
DCAR_024278 Daucus carota HOM05D005408 ORTHO05D006790 2.5e-242 842.8 954 52.5
CSS0047984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 4.2e-242 842.0 994 50.6
FAN12G0827 Fragaria x ananassa HOM05D005408 ORTHO05D006790 1.2e-241 840.5 908 53.4
Sabra08G0129000 Salix brachista HOM05D005408 ORTHO05D006790 2.7e-241 839.3 957 52.6
Haze_11418 Corylus avellana HOM05D005408 ORTHO05D006790 3.5e-241 839.0 964 52.0
CiPaw.02G109300 Carya illinoinensis HOM05D005408 ORTHO05D006790 1.0e-240 837.4 952 52.7
RcHm_v2.0_Chr4g0394291 Rosa chinensis HOM05D005408 ORTHO05D006790 8.7e-240 834.3 924 52.6
FvH4_4g04020 Fragaria vesca HOM05D005408 ORTHO05D006790 1.5e-239 833.6 902 53.3
Sopen09g033240 Solanum pennellii HOM05D005408 ORTHO05D006790 2.1e-238 829.7 985 49.8
TWI53G1583 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 2.8e-238 829.3 972 51.0
Manes.15G043300 Manihot esculenta HOM05D005408 ORTHO05D006790 4.8e-238 828.6 929 52.7
FAN17G2537 Fragaria x ananassa HOM05D005408 ORTHO05D006790 6.9e-237 824.7 902 53.2
MD13G1216600 Malus domestica HOM05D005408 ORTHO05D006790 6.9e-237 824.7 978 50.4
Solyc09g090340.3 Solanum lycopersicum HOM05D005408 ORTHO05D006790 1.2e-236 823.9 978 49.8
Cfa014743 Carpinus fangiana HOM05D005408 ORTHO05D006790 2.0e-236 823.2 960 50.7
Gohir.A02G040500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 3.4e-236 822.4 941 52.1
Gohir.D02G046500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 2.9e-235 819.3 947 52.1
CSS0016984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 8.4e-235 817.8 983 50.3
TAR633G1608 Trochodendron aralioides HOM05D005408 ORTHO05D006790 2.3e-232 809.7 1025 49.4
Rhsim02G0041600 Rhododendron simsii HOM05D005408 ORTHO05D006790 6.7e-232 808.1 796 56.4
Peaxi162Scf00392g00730 Petunia axillaris HOM05D005408 ORTHO05D006790 3.3e-231 805.8 972 49.3
Oeu002940.1 Olea europaea HOM05D005408 ORTHO05D006790 7.4e-231 804.7 940 50.9
FAN22G0039 Fragaria x ananassa HOM05D005408 ORTHO05D006790 9.7e-231 804.3 960 50.2
PGSC0003DMG400017212 Solanum tuberosum HOM05D005408 ORTHO05D006790 3.1e-229 799.3 988 48.7
EL10Ac3g04981 Beta vulgaris HOM05D005408 ORTHO05D006790 1.5e-228 797.0 951 51.4
CANSAT54G2691 Cannabis sativa HOM05D005408 ORTHO05D006790 2.6e-228 796.2 967 50.6
PGR004G2334 Punica granatum HOM05D005408 ORTHO05D006790 7.7e-228 794.7 947 51.0
SalBow3G0714 Salvia bowleyana HOM05D005408 ORTHO05D006790 6.5e-227 791.6 973 49.7
CiPaw.01G181400 Carya illinoinensis HOM05D005408 ORTHO05D006790 2.1e-225 786.6 932 50.4
ClCG05G004200 Citrullus lanatus HOM05D005408 ORTHO05D006790 3.9e-224 782.3 983 48.4
MELO3C006406.2 Cucumis melo HOM05D005408 ORTHO05D006790 5.1e-224 781.9 987 47.8
Nn1g02867 Nelumbo nucifera HOM05D005408 ORTHO05D006790 5.1e-224 781.9 1035 47.7
Gorai.005G051300 Gossypium raimondii HOM05D005408 ORTHO05D006790 1.1e-223 780.8 883 52.7
Oeu005084.1 Olea europaea HOM05D005408 ORTHO05D006790 1.5e-223 780.4 935 49.5
Eucgr.H03018 Eucalyptus grandis HOM05D005408 ORTHO05D006790 3.7e-222 775.8 954 50.7
TAR362G0279 Trochodendron aralioides HOM05D005408 ORTHO05D006790 4.8e-222 775.4 1006 48.4
CAN.G220.39 Capsicum annuum HOM05D005408 ORTHO05D006790 1.8e-221 773.5 1020 46.3
Cc03_g05790 Coffea canephora HOM05D005408 ORTHO05D006790 9.1e-221 771.2 1004 48.4
vmacro15459 Vaccinium macrocarpon HOM05D005408 ORTHO05D006790 9.1e-221 771.2 1110 45.5
CsaV3_3G011930 Cucumis sativus L. HOM05D005408 ORTHO05D006790 3.4e-220 769.2 983 47.6
Migut.N00286 Erythranthe guttata HOM05D005408 ORTHO05D006790 1.0e-219 767.7 974 46.9
Lj3A679T38 Lonicera japonica HOM05D005408 ORTHO05D006790 2.9e-219 766.1 1001 48.8
Hma1.2p1_0112F.1_g054305 Hydrangea macrophylla HOM05D005408 ORTHO05D006790 2.5e-218 763.1 723 57.3
Sc19g0003230 Simmondsia chinensis HOM05D005408 ORTHO05D006790 3.6e-217 759.2 951 48.1
Lj3A684T25 Lonicera japonica HOM05D005408 ORTHO05D006790 4.7e-217 758.8 1002 48.5
AUR62015544 Chenopodium quinoa HOM05D005408 ORTHO05D006790 6.1e-217 758.4 963 48.6
MSTRG.21921 Avicennia marina HOM05D005408 ORTHO05D006790 2.3e-216 756.5 979 46.2
PSO832G1937 Papaver somniferum HOM05D005408 ORTHO05D006790 3.9e-216 755.7 968 47.7
Nitab4.5_0000596g0060 Nicotiana tabacum HOM05D005408 ORTHO05D006790 2.0e-215 753.4 1085 44.3
arahy.Tifrunner.gnm1.ann1.NA4LRU Arachis hypogaea HOM05D005408 ORTHO05D006790 9.7e-215 751.1 941 48.0
Lalb_Chr03g0037341 Lupinus albus HOM05D005408 ORTHO05D006790 1.7e-214 750.4 948 49.3
Glyma.10G004700 Glycine max HOM05D005408 ORTHO05D006790 1.1e-213 747.7 668 59.1
Nitab4.5_0000044g0530 Nicotiana tabacum HOM05D005408 ORTHO05D006790 4.1e-213 745.7 1021 45.1
arahy.Tifrunner.gnm1.ann1.HQEG75 Arachis hypogaea HOM05D005408 ORTHO05D006790 5.3e-213 745.3 942 48.1
Phvul.007G275400 Phaseolus vulgaris HOM05D005408 ORTHO05D006790 5.3e-213 745.3 660 58.2
PSO210G0343 Papaver somniferum HOM05D005408 ORTHO05D006790 1.2e-212 744.2 971 47.4
Hund03055 Selenicereus undatus HOM05D005408 ORTHO05D006790 1.6e-212 743.8 989 46.0
Lj6g0021221 Lotus japonicus HOM05D005408 ORTHO05D006790 2.6e-212 743.0 710 56.2
VMungo0720G1073 Vigna mungo HOM05D005408 ORTHO05D006790 1.0e-211 741.1 761 53.4
Aqoxy5G00183 Aquilegia oxysepala HOM05D005408 ORTHO05D006790 1.3e-211 740.7 1018 46.5
Sed0026902 Sechium edule HOM05D005408 ORTHO05D006790 1.3e-211 740.7 944 48.4
Glyma.02G003800 Glycine max HOM05D005408 ORTHO05D006790 8.5e-211 738.0 672 57.6
ECA248G0134 Erigeron canadensis HOM05D005408 ORTHO05D006790 6.1e-209 731.9 905 48.4
AUR62002164 Chenopodium quinoa HOM05D005408 ORTHO05D006790 2.0e-207 726.9 941 48.4
MBI07_g31083_MAGBIO Magnolia biondii HOM05D005408 ORTHO05D006790 2.6e-207 726.5 961 47.5
HanXRQChr11g0330791 Helianthus annuus HOM05D005408 ORTHO05D006790 2.2e-206 723.4 959 46.9
TPR.G25189 Trifolium pratense HOM05D005408 ORTHO05D006790 3.1e-205 719.5 718 54.0
SGA_v2.0_scaffold43G16217 Striga asiatica HOM05D005408 ORTHO05D006790 1.2e-204 717.6 941 47.3
Psat6g104520 Pisum sativum HOM05D005408 ORTHO05D006790 7.7e-204 714.9 739 52.9
Medtr1g041685 Medicago truncatula HOM05D005408 ORTHO05D006790 8.5e-203 711.4 680 55.4
Migut.G00502 Erythranthe guttata HOM05D005408 ORTHO05D006790 1.0e-200 704.5 934 47.2
Lsat_1_v5_gn_1_74661 Lactuca sativa HOM05D005408 ORTHO05D006790 3.1e-197 693.0 956 45.8
Ca_03010_v3 Cicer arietinum L. HOM05D005408 ORTHO05D006790 2.7e-196 689.9 743 52.0
SGA_v2.0_scaffold101G29731 Striga asiatica HOM05D005408 ORTHO05D006790 1.2e-191 674.5 889 45.6
HanXRQChr01g0023201 Helianthus annuus HOM05D005408 ORTHO05D006790 5.0e-187 659.1 940 45.6
Zm00001eb191660 Zea mays HOM05D005408 ORTHO05D006790 1.5e-186 657.5 712 51.3
Zm00001eb258510 Zea mays HOM05D005408 ORTHO05D006790 1.6e-185 654.1 737 50.2
MSTRG.4147 Avicennia marina HOM05D005408 ORTHO05D006790 1.3e-179 634.4 698 49.6
ATR0736G089 Amborella trichopoda HOM05D005408 ORTHO05D006790 3.6e-177 626.3 742 48.4
CDE04G2551 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 1.2e-164 584.7 682 48.5
CDE07G1006 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 3.8e-158 563.1 1013 38.6
SEGI_14734 Sequoiadendron giganteum HOM05D005408 ORTHO05D006790 4.2e-149 533.1 702 43.9
unitig_736.g22443 Utricularia gibba HOM05D005408 ORTHO05D006790 4.5e-143 513.1 850 40.9
HPP92_008326 Vanilla planifolia HOM05D005408 ORTHO05D006790 2.7e-140 503.8 650 45.5
TPR.G25191 Trifolium pratense HOM05D005408 ORTHO05D006790 5.3e-120 436.4 647 40.3
Ah.13g072600 Amaranthus hybridus HOM05D005408 ORTHO05D006790 1.3e-118 431.8 704 41.9
Os02g0809900 Oryza sativa ssp. japonica HOM05D005408 ORTHO05D006790 2.1e-100 371.3 311 57.9
Mapoly0063s0094 Marchantia polymorpha HOM05D005408 ORTHO05D006790 5.7e-98 363.2 573 36.6
Pp3c16_10130 Physcomitrium patens HOM05D005408 ORTHO05D006790 6.3e-97 359.8 562 36.1
Pp3c25_7300 Physcomitrium patens HOM05D005408 ORTHO05D006790 5.3e-96 356.7 945 30.7
AagrBONN_evm.TU.Sc2ySwM_228.3605 Anthoceros agrestis HOM05D005408 ORTHO05D006790 4.5e-87 327.0 453 40.2
SalBow8G3468 Salvia bowleyana HOM05D005408 ORTHO05D006790 1.3e-33 149.4 120 62.5
SalBow7G4774 Salvia bowleyana HOM05D005408 ORTHO05D006790 9.3e-32 143.3 120 60.0
C04p41430 Brassica napus HOM05D005408 ORTHO05D006790 2.3e-30 138.7 135 63.7
BolC4t25724H Brassica oleracea HOM05D005408 ORTHO05D006790 3.0e-30 138.3 135 63.7
CBR_g30942 Chara braunii HOM05D005408 ORTHO05D006790 1.6e-28 132.5 381 28.6
CiPaw.06G041800 Carya illinoinensis HOM05D005408 ORTHO05D006790 3.6e-28 131.3 318 38.7
Hund11908 Selenicereus undatus HOM05D005408 ORTHO05D006790 3.2e-24 118.2 170 43.5
Rhsim02G0041700 Rhododendron simsii HOM05D005408 ORTHO05D006790 3.0e-22 111.7 195 37.9
A04p07780 Brassica napus HOM05D005408 ORTHO05D006790 6.9e-19 100.5 85 68.2
BolC4t25725H Brassica oleracea HOM05D005408 ORTHO05D006790 1.2e-15 89.7 102 51.0
BcaC02g09333 Brassica carinata HOM05D005408 ORTHO05D006790 1.8e-14 85.9 110 54.5
C04p41440 Brassica napus HOM05D005408 ORTHO05D006790 5.1e-14 84.3 102 50.0


User provided reference genes

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