Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR220460 Cardamine hirsuta HOM05D002377 ORTHO05D002656 2.3e-69 265.4 130 100.0
AL7G43870 Arabidopsis lyrata HOM05D002377 ORTHO05D002656 8.3e-35 150.6 129 56.6
AL2G26510 Arabidopsis lyrata HOM05D002377 ORTHO05D002656 3.2e-34 148.7 129 55.8
AL2G25790 Arabidopsis lyrata HOM05D002377 ORTHO05D002656 1.6e-33 146.4 129 57.4
Thhalv10018457m.g Eutrema salsugineum HOM05D002377 ORTHO05D002656 2.1e-33 146.0 122 58.2
AT1G67780 Arabidopsis thaliana HOM05D002377 ORTHO05D002656 6.0e-33 144.4 127 55.1
BcaB05g24254 Brassica carinata HOM05D002377 ORTHO05D002656 6.0e-33 144.4 126 55.6
BcaC03g14822 Brassica carinata HOM05D002377 ORTHO05D002656 3.9e-32 141.7 124 54.8
C02p22730 Brassica napus HOM05D002377 ORTHO05D002656 3.9e-32 141.7 124 54.8
BolC2t08426H Brassica oleracea HOM05D002377 ORTHO05D002656 3.9e-32 141.7 124 54.8
BcaB03g15217 Brassica carinata HOM05D002377 ORTHO05D002656 6.6e-32 141.0 126 55.6
A02p14120 Brassica napus HOM05D002377 ORTHO05D002656 6.6e-32 141.0 123 55.3
BraA02t06475Z Brassica rapa HOM05D002377 ORTHO05D002656 6.6e-32 141.0 123 55.3
BolC6t39138H Brassica oleracea HOM05D002377 ORTHO05D002656 2.1e-30 136.0 130 53.8
CARHR056340 Cardamine hirsuta HOM05D002377 ORTHO05D002656 3.6e-30 135.2 131 53.4
A07p33880 Brassica napus HOM05D002377 ORTHO05D002656 4.7e-30 134.8 129 53.5
BraA07t31014Z Brassica rapa HOM05D002377 ORTHO05D002656 4.7e-30 134.8 129 53.5
Carub.0002s1422 Capsella rubella HOM05D002377 ORTHO05D002656 8.1e-30 134.0 125 53.6
BcaC08g46154 Brassica carinata HOM05D002377 ORTHO05D002656 1.1e-29 133.7 130 53.1
C06p42990 Brassica napus HOM05D002377 ORTHO05D002656 1.1e-29 133.7 130 53.1
AT1G67270 Arabidopsis thaliana HOM05D002377 ORTHO05D002656 1.4e-29 133.3 109 57.8
AL2G25780 Arabidopsis lyrata HOM05D002377 ORTHO05D002656 1.8e-29 132.9 127 51.2
Aa31LG2G3640 Aethionema arabicum HOM05D002377 ORTHO05D002656 1.3e-24 116.7 129 48.1
TWI77G0863 Tripterygium wilfordii HOM05D002377 ORTHO05D002656 5.1e-24 114.8 127 45.7
Carub.0001s3380 Capsella rubella HOM05D002377 ORTHO05D002656 1.5e-23 113.2 130 50.8
THA.LOC104805549 Tarenaya hassleriana HOM05D002377 ORTHO05D002656 2.5e-23 112.5 129 45.7
TWI74G0736 Tripterygium wilfordii HOM05D002377 ORTHO05D002656 7.3e-23 110.9 127 45.7
CSS0036143 Camellia sinensis var. sinensis HOM05D002377 ORTHO05D002656 2.4e-21 105.9 128 42.2
Actinidia17617 Actinidia chinensis HOM05D002377 ORTHO05D002656 5.2e-21 104.8 128 42.2
CARHR059750 Cardamine hirsuta HOM05D002377 ORTHO05D002656 1.2e-20 103.6 127 46.5
AL7G51760 Arabidopsis lyrata HOM05D002377 ORTHO05D002656 1.5e-20 103.2 130 42.3
Cpa.g.sc179.21 Carica papaya HOM05D002377 ORTHO05D002656 1.5e-20 103.2 129 41.9
Rhsim10G0063300 Rhododendron simsii HOM05D002377 ORTHO05D002656 1.5e-20 103.2 128 41.4
Actinidia36310 Actinidia chinensis HOM05D002377 ORTHO05D002656 2.6e-20 102.4 128 39.8
Aa31LG9G16950 Aethionema arabicum HOM05D002377 ORTHO05D002656 2.6e-20 102.4 127 42.5
A01p24770 Brassica napus HOM05D002377 ORTHO05D002656 3.4e-20 102.1 128 39.1
Haze_14132 Corylus avellana HOM05D002377 ORTHO05D002656 4.4e-20 101.7 129 42.6
Manes.01G108500 Manihot esculenta HOM05D002377 ORTHO05D002656 4.4e-20 101.7 129 41.1
BraA10t43069Z Brassica rapa HOM05D002377 ORTHO05D002656 5.8e-20 101.3 129 38.0
Duzib138G1604 Durio zibethinus HOM05D002377 ORTHO05D002656 5.8e-20 101.3 129 40.3
Atru.chr8.841 Acer truncatum HOM05D002377 ORTHO05D002656 7.6e-20 100.9 129 41.9
A10p09880 Brassica napus HOM05D002377 ORTHO05D002656 7.6e-20 100.9 128 37.5
BraA01t02388Z Brassica rapa HOM05D002377 ORTHO05D002656 1.3e-19 100.1 128 39.1
Sp7g13280 Schrenkiella parvula HOM05D002377 ORTHO05D002656 1.3e-19 100.1 129 39.5
BcaB08g35568 Brassica carinata HOM05D002377 ORTHO05D002656 1.7e-19 99.8 128 38.3
AT5G38690 Arabidopsis thaliana HOM05D002377 ORTHO05D002656 2.2e-19 99.4 127 40.9
Hma1.2p1_0136F.1_g062080 Hydrangea macrophylla HOM05D002377 ORTHO05D002656 2.9e-19 99.0 130 38.5
Carub.0007s3716 Capsella rubella HOM05D002377 ORTHO05D002656 3.8e-19 98.6 127 40.9
Potri.006G257400 Populus trichocarpa HOM05D002377 ORTHO05D002656 3.8e-19 98.6 129 38.8
vmacro18107 Vaccinium macrocarpon HOM05D002377 ORTHO05D002656 3.8e-19 98.6 128 39.8
Cfa007943 Carpinus fangiana HOM05D002377 ORTHO05D002656 4.9e-19 98.2 129 41.9
Nn4g23747 Nelumbo nucifera HOM05D002377 ORTHO05D002656 4.9e-19 98.2 128 38.3
Potri.018G024400 Populus trichocarpa HOM05D002377 ORTHO05D002656 8.4e-19 97.4 129 38.0
Manes.02G066800 Manihot esculenta HOM05D002377 ORTHO05D002656 1.1e-18 97.1 116 42.2
Rhsim08G0079400 Rhododendron simsii HOM05D002377 ORTHO05D002656 1.1e-18 97.1 127 39.4
Rhsim08G0213400 Rhododendron simsii HOM05D002377 ORTHO05D002656 1.4e-18 96.7 129 38.8
CSS0047835 Camellia sinensis var. sinensis HOM05D002377 ORTHO05D002656 1.9e-18 96.3 128 40.6
Gohir.A07G071300 Gossypium hirsutum HOM05D002377 ORTHO05D002656 1.9e-18 96.3 129 38.8
Gohir.D07G075800 Gossypium hirsutum HOM05D002377 ORTHO05D002656 1.9e-18 96.3 129 38.8
Gorai.001G080000 Gossypium raimondii HOM05D002377 ORTHO05D002656 1.9e-18 96.3 129 38.8
COL.COLO4_16190 Corchorus olitorius HOM05D002377 ORTHO05D007658 3.2e-18 95.5 127 39.4
Thecc.04G137200 Theobroma cacao HOM05D002377 ORTHO05D002656 3.2e-18 95.5 129 37.2
TAR371G0143 Trochodendron aralioides HOM05D002377 ORTHO05D002656 3.2e-18 95.5 129 35.7
Sp7g03880 Schrenkiella parvula HOM05D002377 ORTHO05D002656 5.4e-18 94.7 129 38.8
Thhalv10015379m.g Eutrema salsugineum HOM05D002377 ORTHO05D002656 7.1e-18 94.4 129 41.9
Nn3g17762 Nelumbo nucifera HOM05D002377 ORTHO05D002656 7.1e-18 94.4 125 39.2
Sc10g0001320 Simmondsia chinensis HOM05D002377 ORTHO05D002656 7.1e-18 94.4 129 39.5
Cc07_g08990 Coffea canephora HOM05D002377 ORTHO05D002656 9.2e-18 94.0 129 38.0
Eucgr.K02999 Eucalyptus grandis HOM05D002377 ORTHO05D002656 9.2e-18 94.0 127 37.0
Sabra18G0026900 Salix brachista HOM05D002377 ORTHO05D002656 9.2e-18 94.0 129 38.0
Nitab4.5_0007207g0020 Nicotiana tabacum HOM05D002377 ORTHO05D002656 1.2e-17 93.6 122 41.0
Sed0013300 Sechium edule HOM05D002377 ORTHO05D002656 1.6e-17 93.2 128 40.6
MELO3C018942.2 Cucumis melo HOM05D002377 ORTHO05D002656 2.1e-17 92.8 129 41.9
Nitab4.5_0000628g0170 Nicotiana tabacum HOM05D002377 ORTHO05D002656 2.1e-17 92.8 122 41.0
Sp7g03230 Schrenkiella parvula HOM05D002377 ORTHO05D002656 2.1e-17 92.8 133 38.3
THA.LOC104823872 Tarenaya hassleriana HOM05D002377 ORTHO05D002656 2.1e-17 92.8 115 40.0
vmacro05571 Vaccinium macrocarpon HOM05D002377 ORTHO05D002656 4.6e-17 91.7 128 37.5
HanXRQChr11g0324961 Helianthus annuus HOM05D002377 ORTHO05D002656 6.0e-17 91.3 130 39.2
HanXRQChr14g0438691 Helianthus annuus HOM05D002377 ORTHO05D002656 6.0e-17 91.3 130 40.0
C06p18180 Brassica napus HOM05D002377 ORTHO05D002656 7.8e-17 90.9 127 35.4
Aqoxy3G03923 Aquilegia oxysepala HOM05D002377 ORTHO05D002656 1.0e-16 90.5 129 34.9
BcaB02g07988 Brassica carinata HOM05D002377 ORTHO05D002656 1.3e-16 90.1 129 34.9
BcaC08g44385 Brassica carinata HOM05D002377 ORTHO05D002656 1.3e-16 90.1 127 34.6
BolC6t37028H Brassica oleracea HOM05D002377 ORTHO05D002656 1.3e-16 90.1 127 34.6
ClCG07G016290 Citrullus lanatus HOM05D002377 ORTHO05D002656 1.7e-16 89.7 129 38.8
BraA07t29694Z Brassica rapa HOM05D002377 ORTHO05D002656 2.3e-16 89.4 127 34.6
QL02p052529 Quercus lobata HOM05D002377 ORTHO05D002656 2.3e-16 89.4 129 38.8
GSVIVG01036454001 Vitis vinifera HOM05D002377 ORTHO05D002656 2.3e-16 89.4 126 34.9
A07p19760 Brassica napus HOM05D002377 ORTHO05D002656 3.0e-16 89.0 127 34.6
CiPaw.03G059900 Carya illinoinensis HOM05D002377 ORTHO05D002656 3.0e-16 89.0 129 34.1
Lj2C446G7 Lonicera japonica HOM05D002377 ORTHO05D002656 3.0e-16 89.0 139 36.0
A07p19910 Brassica napus HOM05D002377 ORTHO05D002656 3.9e-16 88.6 127 34.6
CANSAT64G0813 Cannabis sativa HOM05D002377 ORTHO05D002656 6.6e-16 87.8 128 36.7
ECA232G2661 Erigeron canadensis HOM05D002377 ORTHO05D002656 6.6e-16 87.8 130 40.0
Peaxi162Scf00501g00003 Petunia axillaris HOM05D002377 ORTHO05D002656 6.6e-16 87.8 126 36.5
BcaB02g07990 Brassica carinata HOM05D002377 ORTHO05D002656 8.7e-16 87.4 115 35.7
FAN09G2786 Fragaria x ananassa HOM05D002377 ORTHO05D002656 1.1e-15 87.0 129 34.1
TPR.G32439 Trifolium pratense HOM05D002377 ORTHO05D002656 1.5e-15 86.7 130 36.9
Ah.10g037560 Amaranthus hybridus HOM05D002377 ORTHO05D002656 1.9e-15 86.3 129 34.9
BolC1t03024H Brassica oleracea HOM05D002377 ORTHO05D002656 1.9e-15 86.3 128 35.9
CAN.G23.15 Capsicum annuum HOM05D002377 ORTHO05D000001 1.9e-15 86.3 122 37.7
Medtr6g017265 Medicago truncatula HOM05D002377 ORTHO05D002656 1.9e-15 86.3 131 38.2
Ah.16g101980 Amaranthus hybridus HOM05D002377 ORTHO05D002656 2.5e-15 85.9 129 34.1
BcaC09g49947 Brassica carinata HOM05D002377 ORTHO05D002656 2.5e-15 85.9 128 35.9
C01p30870 Brassica napus HOM05D002377 ORTHO05D002656 2.5e-15 85.9 128 35.9
Sp5g22200 Schrenkiella parvula HOM05D002377 ORTHO05D002656 2.5e-15 85.9 90 48.9
BraA07t29676Z Brassica rapa HOM05D002377 ORTHO05D002656 3.3e-15 85.5 127 33.1
FAN05G2582 Fragaria x ananassa HOM05D002377 ORTHO05D002656 4.3e-15 85.1 129 34.1
FAN14G1662 Fragaria x ananassa HOM05D002377 ORTHO05D002656 4.3e-15 85.1 129 34.9
Sabra06G0201400 Salix brachista HOM05D002377 ORTHO05D002656 7.3e-15 84.3 130 36.2
GSVIVG01036441001 Vitis vinifera HOM05D002377 ORTHO05D002656 7.3e-15 84.3 126 34.1
RcHm_v2.0_Chr4g0409761 Rosa chinensis HOM05D002377 ORTHO05D002656 9.6e-15 84.0 129 32.6
Ciclev10013338m.g Citrus clementina HOM05D002377 ORTHO05D002656 1.3e-14 83.6 128 41.4
FvH4_6g45330 Fragaria vesca HOM05D002377 ORTHO05D002656 1.3e-14 83.6 129 34.9
FAN02G2893 Fragaria x ananassa HOM05D002377 ORTHO05D002656 1.3e-14 83.6 129 33.3
Dinv34846 Davidia involucrata HOM05D002377 ORTHO05D002656 1.6e-14 83.2 129 34.9
PGR004G2471 Punica granatum HOM05D002377 ORTHO05D002656 2.1e-14 82.8 126 34.1
RcHm_v2.0_Chr2g0163111 Rosa chinensis HOM05D002377 ORTHO05D002656 2.1e-14 82.8 129 34.9
GSVIVG01008246001 Vitis vinifera HOM05D002377 ORTHO05D002656 2.1e-14 82.8 127 35.4
Sopen02g014120 Solanum pennellii HOM05D002377 ORTHO05D002656 3.6e-14 82.0 128 36.7
Psat1g013040 Pisum sativum HOM05D002377 ORTHO05D002656 4.8e-14 81.6 132 37.1
BcaC08g44388 Brassica carinata HOM05D002377 ORTHO05D002656 6.2e-14 81.3 131 32.1
MD09G1085300 Malus domestica HOM05D002377 ORTHO05D002656 1.1e-13 80.5 126 37.3
Lj9C429G13 Lonicera japonica HOM05D002377 ORTHO05D002656 1.4e-13 80.1 133 31.6
Sed0012433 Sechium edule HOM05D002377 ORTHO05D002656 1.4e-13 80.1 129 36.4
Medtr0024s0330 Medicago truncatula HOM05D002377 ORTHO05D002656 1.8e-13 79.7 131 35.1
Phvul.004G063500 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 4.0e-13 78.6 128 28.1
Psat1g061520 Pisum sativum HOM05D002377 ORTHO05D002656 4.0e-13 78.6 131 36.6
Atru.chr9.780 Acer truncatum HOM05D002377 ORTHO05D002656 5.3e-13 78.2 130 34.6
C06p18200 Brassica napus HOM05D002377 ORTHO05D002656 6.9e-13 77.8 127 33.1
BolC6t37032H Brassica oleracea HOM05D002377 ORTHO05D002656 6.9e-13 77.8 127 33.1
AUR62008967 Chenopodium quinoa HOM05D002377 ORTHO05D002656 6.9e-13 77.8 129 31.0
MBI09_g41182_MAGBIO Magnolia biondii HOM05D002377 ORTHO05D002656 6.9e-13 77.8 131 31.3
Solyc02g063060.4 Solanum lycopersicum HOM05D002377 ORTHO05D002656 6.9e-13 77.8 126 35.7
AUR62014536 Chenopodium quinoa HOM05D002377 ORTHO05D002656 1.2e-12 77.0 129 31.0
Aqoxy3G00365 Aquilegia oxysepala HOM05D002377 ORTHO05D002656 1.5e-12 76.6 128 29.7
BcaB02g07989 Brassica carinata HOM05D002377 ORTHO05D002656 2.6e-12 75.9 114 33.3
CSS0036215 Camellia sinensis var. sinensis HOM05D002377 ORTHO05D002656 2.6e-12 75.9 126 30.2
TPR.G27300 Trifolium pratense HOM05D002377 ORTHO05D002656 3.4e-12 75.5 128 35.9
Carub.0002s1355 Capsella rubella HOM05D002377 ORTHO05D002656 9.9e-12 73.9 129 39.5
Lsat_1_v5_gn_4_153060 Lactuca sativa HOM05D002377 ORTHO05D002656 9.9e-12 73.9 130 33.8
Lalb_Chr21g0317901 Lupinus albus HOM05D002377 ORTHO05D002656 1.3e-11 73.6 128 34.4
HPP92_008846 Vanilla planifolia HOM05D002377 ORTHO05D002656 1.7e-11 73.2 129 26.4
EL10Ac2g04603 Beta vulgaris HOM05D002377 ORTHO05D002656 2.2e-11 72.8 142 28.2
Sp7g03240 Schrenkiella parvula HOM05D000305 ORTHO05D000065 2.2e-11 72.8 64 43.8
QL10p022421 Quercus lobata HOM05D002377 ORTHO05D002656 3.8e-11 72.0 129 31.8
QL10p023680 Quercus lobata HOM05D002377 ORTHO05D002656 3.8e-11 72.0 129 31.8
Lj2g0023885 Lotus japonicus HOM05D002377 ORTHO05D002656 4.9e-11 71.6 130 32.3
ATR0589G037 Amborella trichopoda HOM05D002377 ORTHO05D002656 6.4e-11 71.2 130 28.5
TPR.G32468 Trifolium pratense HOM05D002377 ORTHO05D002656 1.1e-10 70.5 101 33.7
Oeu032559.1 Olea europaea HOM05D002377 ORTHO05D002656 3.2e-10 68.9 112 34.8
Prupe.3G239500 Prunus persica HOM05D002377 ORTHO05D002656 3.2e-10 68.9 129 30.2
Rhsim12G0144500 Rhododendron simsii HOM05D002377 ORTHO05D002656 4.2e-10 68.6 124 28.2
TPR.G8256 Trifolium pratense HOM05D002377 ORTHO05D002656 5.4e-10 68.2 131 32.1
PSO017G0035 Papaver somniferum HOM05D002377 ORTHO05D002656 7.1e-10 67.8 128 29.7
PSO478G3393 Papaver somniferum HOM05D002377 ORTHO05D002656 7.1e-10 67.8 128 29.7
unitig_0.g8 Utricularia gibba HOM05D002377 ORTHO05D002656 1.6e-09 66.6 129 33.3
BcaC08g44412 Brassica carinata HOM05D002377 ORTHO05D002656 2.1e-09 66.2 107 32.7
C06p18490 Brassica napus HOM05D002377 ORTHO05D002656 2.1e-09 66.2 107 32.7
CsaV3_4G008820 Cucumis sativus L. HOM05D002377 ORTHO05D002656 2.7e-09 65.9 115 33.9
COL.COLO4_16236 Corchorus olitorius HOM05D002377 ORTHO05D002656 3.5e-09 65.5 141 31.2
Dinv07367 Davidia involucrata HOM05D002377 ORTHO05D002656 6.0e-09 64.7 111 29.7
Lalb_Chr21g0317891 Lupinus albus HOM05D002377 ORTHO05D002656 1.7e-08 63.2 130 30.8
Actinidia18943 Actinidia chinensis HOM05D002377 ORTHO05D002656 2.3e-08 62.8 126 26.2
CARHR214120 Cardamine hirsuta HOM05D002377 ORTHO05D002656 5.1e-08 61.6 87 36.8
Phvul.004G063400 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 5.1e-08 61.6 130 28.5
Phvul.004G063200 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 6.6e-08 61.2 130 26.2
SEGI_24532 Sequoiadendron giganteum HOM05D002377 ORTHO05D002656 6.6e-08 61.2 130 24.6
Lj1g0011123 Lotus japonicus HOM05D002377 ORTHO05D002656 8.7e-08 60.8 103 31.1
TAR622G1086 Trochodendron aralioides HOM05D002377 ORTHO05D002656 1.1e-07 60.5 87 36.8
ECA246G0024 Erigeron canadensis HOM05D002377 ORTHO05D002656 1.9e-07 59.7 129 29.5
SGA_v2.0_scaffold90G27694 Striga asiatica HOM05D002377 ORTHO05D002656 4.3e-07 58.5 127 31.5
Hund13732 Selenicereus undatus HOM05D002377 ORTHO05D002656 9.6e-07 57.4 87 35.6
Actinidia15869 Actinidia chinensis HOM05D002377 ORTHO05D002656 1.6e-06 56.6 77 32.5


User provided reference genes

Program Settings