Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR220230 Cardamine hirsuta HOM05D007897 ORTHO05D010061 1.5e-217 759.6 499 100.0
AL7G42190 Arabidopsis lyrata HOM05D007897 ORTHO05D010061 8.1e-171 604.4 507 85.2
AT4G14190 Arabidopsis thaliana HOM05D007897 ORTHO05D010061 1.8e-162 576.6 507 83.2
Thhalv10027442m.g Eutrema salsugineum HOM05D007897 ORTHO05D010061 6.0e-158 561.6 503 81.9
Carub.0007s2820 Capsella rubella HOM05D007897 ORTHO05D010061 3.0e-157 559.3 509 80.6
BcaB08g35766 Brassica carinata HOM05D007897 ORTHO05D010061 1.4e-143 513.8 505 77.8
Sp6g16180 Schrenkiella parvula HOM05D007897 ORTHO05D010061 1.6e-142 510.4 512 77.1
A10p11440 Brassica napus HOM05D007897 ORTHO05D010061 2.5e-132 476.5 504 75.4
C09p44340 Brassica napus HOM05D007897 ORTHO05D010061 3.3e-132 476.1 504 74.8
BraA10t43238Z Brassica rapa HOM05D007897 ORTHO05D010061 3.7e-131 472.6 504 75.0
BolC9t57304H Brassica oleracea HOM05D007897 ORTHO05D010061 2.2e-128 463.4 504 74.0
Aa31LG9G3200 Aethionema arabicum HOM05D007897 ORTHO05D010061 6.7e-125 451.8 510 73.3
THA.LOC104808674 Tarenaya hassleriana HOM05D007897 ORTHO05D010061 1.9e-111 407.1 503 67.8
BcaC04g20377 Brassica carinata HOM05D007897 ORTHO05D010061 8.0e-110 401.7 504 61.1
Manes.05G198900 Manihot esculenta HOM05D007897 ORTHO05D010061 2.1e-86 323.9 436 64.4
Ciclev10004784m.g Citrus clementina HOM05D007897 ORTHO05D010061 3.6e-86 323.2 470 63.4
TWI23G0094 Tripterygium wilfordii HOM05D007897 ORTHO05D010061 2.4e-82 310.5 493 58.2
Dinv32167 Davidia involucrata HOM05D007897 ORTHO05D010061 3.3e-79 300.1 450 60.4
TAR633G2792 Trochodendron aralioides HOM05D007897 ORTHO05D010061 9.5e-79 298.5 445 62.5
COL.COLO4_35959 Corchorus olitorius HOM05D007897 ORTHO05D010061 2.8e-78 297.0 446 54.0
CSS0029276 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 4.0e-77 293.1 487 57.9
Cpa.g.sc157.16 Carica papaya HOM05D007897 ORTHO05D010061 6.8e-77 292.4 494 58.5
Thecc.04G191100 Theobroma cacao HOM05D007897 ORTHO05D010061 1.2e-76 291.6 446 60.8
Gorai.006G225200 Gossypium raimondii HOM05D007897 ORTHO05D010061 1.5e-76 291.2 425 56.9
Gohir.D09G201400 Gossypium hirsutum HOM05D007897 ORTHO05D010061 4.4e-76 289.7 425 56.9
TAR633G2399 Trochodendron aralioides HOM05D007897 ORTHO05D010061 4.4e-76 289.7 469 60.1
QL06p027281 Quercus lobata HOM05D007897 ORTHO05D010061 9.8e-76 288.5 469 60.6
PSO063G5193 Papaver somniferum HOM05D007897 ORTHO05D010061 3.0e-72 276.9 460 50.0
Duzib212G0894 Durio zibethinus HOM05D007897 ORTHO05D010061 6.6e-72 275.8 475 50.1
Sabra14G0112700 Salix brachista HOM05D007897 ORTHO05D010061 5.6e-71 272.7 480 59.0
PSO017G4232 Papaver somniferum HOM05D007897 ORTHO05D010061 7.3e-71 272.3 487 48.0
Cfa008662 Carpinus fangiana HOM05D007897 ORTHO05D010061 3.6e-70 270.0 471 57.5
Haze_11681 Corylus avellana HOM05D007897 ORTHO05D010061 4.0e-69 266.5 471 57.1
Phvul.001G265200 Phaseolus vulgaris HOM05D007897 ORTHO05D010061 8.9e-69 265.4 446 58.5
Eucgr.L00640 Eucalyptus grandis HOM05D007897 ORTHO05D010061 1.2e-68 265.0 429 49.7
Cc03_g09150 Coffea canephora HOM05D007897 ORTHO05D010061 1.5e-68 264.6 459 57.7
MD04G1021700 Malus domestica HOM05D007897 ORTHO05D010061 7.5e-68 262.3 449 57.9
CANSAT78G0179 Cannabis sativa HOM05D007897 ORTHO05D010061 1.9e-66 257.7 473 56.9
PGR142G1366 Punica granatum HOM05D007897 ORTHO05D010061 9.2e-66 255.4 426 48.6
Sed0009503 Sechium edule HOM05D007897 ORTHO05D010061 3.5e-65 253.4 478 55.9
Nn8g41262 Nelumbo nucifera HOM05D007897 ORTHO05D010061 1.0e-64 251.9 440 57.7
Lalb_Chr03g0036571 Lupinus albus HOM05D007897 ORTHO05D010061 3.0e-64 250.4 495 46.5
VMungo1383G3288 Vigna mungo HOM05D007897 ORTHO05D010061 3.9e-64 250.0 436 57.8
RcHm_v2.0_Chr4g0412521 Rosa chinensis HOM05D007897 ORTHO05D010061 3.3e-63 246.9 438 58.0
FvH4_4g12861 Fragaria vesca HOM05D007897 ORTHO05D010061 7.3e-63 245.7 442 57.0
HanXRQChr01g0022031 Helianthus annuus HOM05D007897 ORTHO05D010061 3.6e-62 243.4 444 54.3
ATR0807G097 Amborella trichopoda HOM05D007897 ORTHO05D010061 1.1e-61 241.9 415 60.0
HanXRQChr17g0535531 Helianthus annuus HOM05D007897 ORTHO05D010061 2.3e-61 240.7 445 53.9
arahy.Tifrunner.gnm1.ann1.T7EAWL Arachis hypogaea HOM05D007897 ORTHO05D010061 5.2e-61 239.6 437 58.4
arahy.Tifrunner.gnm1.ann1.TEUF1S Arachis hypogaea HOM05D007897 ORTHO05D010061 1.2e-60 238.4 437 58.4
MBI07_g06195_MAGBIO Magnolia biondii HOM05D007897 ORTHO05D010061 2.0e-60 237.7 453 57.6
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 2.6e-60 237.3 494 52.8
ECA248G1461 Erigeron canadensis HOM05D007897 ORTHO05D010061 4.4e-60 236.5 433 53.3
CSS0018651 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 5.8e-60 236.1 382 64.7
Lsat_1_v5_gn_1_70121 Lactuca sativa HOM05D007897 ORTHO05D010061 2.9e-59 233.8 434 52.5
Glyma.11G253700 Glycine max HOM05D007897 ORTHO05D010061 4.6e-57 226.5 473 53.9
Glyma.18G003400 Glycine max HOM05D007897 ORTHO05D010061 1.7e-56 224.6 440 55.5
Atru.chr3.1764 Acer truncatum HOM05D007897 ORTHO05D010061 2.0e-52 211.1 183 56.3
Gohir.A09G207900 Gossypium hirsutum HOM05D007897 ORTHO05D010061 2.9e-51 207.2 192 53.6
HPP92_007232 Vanilla planifolia HOM05D007897 ORTHO05D010061 3.8e-51 206.8 421 55.1
CiPaw.02G062400 Carya illinoinensis HOM05D007897 ORTHO05D010061 1.9e-50 204.5 374 63.1
Potri.014G149500 Populus trichocarpa HOM05D007897 ORTHO05D010061 4.2e-50 203.4 372 61.6
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 1.6e-49 201.4 197 50.8
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 3.3e-47 193.7 382 58.6
Oeu050723.3 Olea europaea HOM05D007897 ORTHO05D009229 2.4e-45 187.6 164 53.7
FAN22G1341 Fragaria x ananassa HOM05D007897 ORTHO05D010061 4.9e-43 179.9 178 48.3
Thhalv10027431m.g Eutrema salsugineum HOM05D007897 ORTHO05D010061 4.2e-42 176.8 105 78.1
Manes.05G199032 Manihot esculenta HOM05D007897 ORTHO05D010061 1.1e-39 168.7 290 71.0
Prupe.1G171300 Prunus persica HOM05D007897 ORTHO05D010061 4.9e-27 126.7 164 45.1
arahy.Tifrunner.gnm1.ann1.EZRM4Y Arachis hypogaea HOM05D007897 ORTHO05D010061 6.5e-27 126.3 318 61.9
A02p10540 Brassica napus HOM05D007897 ORTHO05D010061 1.6e-17 95.1 61 75.4
HanXRQChr09g0243521 Helianthus annuus HOM05D007897 ORTHO05D010061 1.5e-15 88.6 127 36.2
Pp3c4_3090 Physcomitrium patens HOM05D007036 ORTHO05D008885 1.4e-13 82.0 407 35.9
BcaC04g20378 Brassica carinata HOM05D007897 ORTHO05D032930 6.9e-13 79.7 105 51.4
C09p44300 Brassica napus HOM05D007897 ORTHO05D032930 2.6e-12 77.8 105 49.5
BolC9t57302H Brassica oleracea HOM05D007897 ORTHO05D032930 3.4e-12 77.4 105 50.5
Peaxi162Scf00954g00025 Petunia axillaris HOM05D007036 ORTHO05D008885 1.3e-11 75.5 192 29.7
TAR636G0074 Trochodendron aralioides HOM05D007036 ORTHO05D008885 1.3e-11 75.5 194 28.9
Nn5g27062 Nelumbo nucifera HOM05D007036 ORTHO05D008885 1.7e-11 75.1 194 29.9
arahy.Tifrunner.gnm1.ann1.UBG147 Arachis hypogaea HOM05D007036 ORTHO05D008885 2.2e-11 74.7 196 29.6
PGR083G2517 Punica granatum HOM05D007036 ORTHO05D008885 2.2e-11 74.7 188 33.0
Lj2g0012301 Lotus japonicus HOM05D007036 ORTHO05D008885 2.9e-11 74.3 193 29.5
arahy.Tifrunner.gnm1.ann1.1YAE55 Arachis hypogaea HOM05D007036 ORTHO05D008885 3.8e-11 73.9 196 29.6
Zm00001eb035670 Zea mays HOM05D007036 ORTHO05D008885 6.5e-11 73.2 195 29.7
SEGI_31150 Sequoiadendron giganteum HOM05D007036 ORTHO05D008885 8.5e-11 72.8 197 31.5
Duzib168G0358 Durio zibethinus HOM05D007036 ORTHO05D008885 1.1e-10 72.4 191 30.9
ATR0626G201 Amborella trichopoda HOM05D007036 ORTHO05D008885 1.4e-10 72.0 194 29.4
Gohir.D07G125650 Gossypium hirsutum HOM05D007897 ORTHO05D010061 1.9e-10 71.6 70 41.4
Nitab4.5_0000404g0190 Nicotiana tabacum HOM05D007036 ORTHO05D008885 2.5e-10 71.2 193 30.6
Thecc.09G196200 Theobroma cacao HOM05D007036 ORTHO05D008885 2.5e-10 71.2 191 31.4
HPP92_028312 Vanilla planifolia HOM05D007036 ORTHO05D008885 2.5e-10 71.2 194 30.4
Gorai.001G135500 Gossypium raimondii HOM05D007897 ORTHO05D010061 3.2e-10 70.9 71 40.8
Gohir.A06G110000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 4.2e-10 70.5 199 30.7
Gohir.D06G112000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 4.2e-10 70.5 199 30.7
unitig_26.g9126 Utricularia gibba HOM05D007036 ORTHO05D008885 5.5e-10 70.1 199 27.6
Gorai.010G127600 Gossypium raimondii HOM05D007036 ORTHO05D008885 7.2e-10 69.7 199 30.7
Gohir.D13G096925 Gossypium hirsutum HOM05D007897 ORTHO05D010061 9.4e-10 69.3 102 35.3
Lj5P749T15 Lonicera japonica HOM05D007036 ORTHO05D008885 9.4e-10 69.3 192 27.6
PSO170G3146 Papaver somniferum HOM05D007036 ORTHO05D008885 9.4e-10 69.3 187 29.4
Gohir.D01G146401 Gossypium hirsutum HOM05D007897 ORTHO05D010061 1.2e-09 68.9 70 41.4
Sabra18G0121200 Salix brachista HOM05D007036 ORTHO05D008885 1.2e-09 68.9 190 29.5
Sabra18G0128300 Salix brachista HOM05D007036 ORTHO05D008885 1.2e-09 68.9 190 29.5
Pp3c3_31860 Physcomitrium patens HOM05D007036 ORTHO05D008885 3.6e-09 67.4 115 35.7
CAN.G106.6 Capsicum annuum HOM05D007036 ORTHO05D008885 4.6e-09 67.0 193 30.6
Gorai.002G182100 Gossypium raimondii HOM05D007897 ORTHO05D010061 4.6e-09 67.0 61 45.9
SMO347G0413 Selaginella moellendorffii HOM05D007036 ORTHO05D008885 6.1e-09 66.6 165 27.9
PGSC0003DMG400013697 Solanum tuberosum HOM05D007036 ORTHO05D008885 6.1e-09 66.6 193 29.5
Sopen05g027850 Solanum pennellii HOM05D007036 ORTHO05D008885 1.0e-08 65.9 193 29.5
Mapoly0002s0203 Marchantia polymorpha HOM05D007036 ORTHO05D008885 5.1e-08 63.5 407 38.6
HanXRQChr09g0243531 Helianthus annuus HOM05D007897 ORTHO05D010061 1.5e-07 62.0 82 37.8
Os08g0520200 Oryza sativa ssp. japonica HOM05D007036 ORTHO05D008885 1.5e-07 62.0 187 27.8
Gohir.D02G105900 Gossypium hirsutum HOM05D007897 ORTHO05D010061 9.7e-07 59.3 52 44.2
Actinidia05428 Actinidia chinensis HOM05D006980 ORTHO05D008704 1.7e-06 58.5 215 27.4
FAN22G1963 Fragaria x ananassa HOM05D007897 ORTHO05D010061 3.7e-06 57.4 61 45.9


User provided reference genes

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