Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR220010 Cardamine hirsuta HOM05D005927 ORTHO05D006952 7.4e-59 230.3 117 100.0
AL7G42420 Arabidopsis lyrata HOM05D005927 ORTHO05D006952 2.0e-32 142.5 118 65.3
AT4G14010 Arabidopsis thaliana HOM05D005927 ORTHO05D006952 1.1e-30 136.7 119 64.7
Sp7g11810 Schrenkiella parvula HOM05D005927 ORTHO05D006952 7.3e-30 134.0 119 64.7
Carub.0007s2841 Capsella rubella HOM05D005927 ORTHO05D006952 2.8e-29 132.1 118 61.0
BcaC02g09370 Brassica carinata HOM05D005927 ORTHO05D006952 1.2e-27 126.7 118 58.5
BolC4t25761H Brassica oleracea HOM05D005927 ORTHO05D006952 1.2e-27 126.7 118 58.5
C04p41800 Brassica napus HOM05D005927 ORTHO05D006952 2.0e-27 125.9 118 57.6
A04p08120 Brassica napus HOM05D005927 ORTHO05D006952 2.4e-25 119.0 120 58.3
BraA04t16501Z Brassica rapa HOM05D005927 ORTHO05D006952 2.4e-25 119.0 120 58.3
Thhalv10026595m.g Eutrema salsugineum HOM05D005927 ORTHO05D006952 3.5e-24 115.2 116 55.2
CARHR220020 Cardamine hirsuta HOM05D005927 ORTHO05D006952 2.3e-23 112.5 120 56.7
BcaB02g08639 Brassica carinata HOM05D005927 ORTHO05D006952 3.0e-23 112.1 119 55.5
Aa31LG9G3330 Aethionema arabicum HOM05D005927 ORTHO05D006952 8.3e-18 94.0 99 49.5
Potri.017G059800 Populus trichocarpa HOM05D005927 ORTHO05D006952 3.0e-15 85.5 116 43.1
THA.LOC104804793 Tarenaya hassleriana HOM05D005927 ORTHO05D006952 5.1e-15 84.7 123 44.7
Sabra17G0053700 Salix brachista HOM05D005927 ORTHO05D006952 4.7e-13 78.2 93 47.3
Sopen09g035160 Solanum pennellii HOM05D005927 ORTHO05D006952 3.1e-12 75.5 110 40.9
FAN12G2699 Fragaria x ananassa HOM05D005927 ORTHO05D006952 4.0e-12 75.1 110 43.6
FvH4_4g13190 Fragaria vesca HOM05D005927 ORTHO05D006952 5.2e-12 74.7 110 42.7
Solyc09g092235.1 Solanum lycopersicum HOM05D005927 ORTHO05D006952 6.8e-12 74.3 111 39.6
MELO3C006773.2 Cucumis melo HOM05D005927 ORTHO05D006952 1.2e-11 73.6 109 41.3
Manes.05G201886 Manihot esculenta HOM05D005927 ORTHO05D006952 1.5e-11 73.2 89 44.9
A03p43360 Brassica napus HOM05D005927 ORTHO05D006952 2.6e-11 72.4 76 47.4
MSTRG.14058 Avicennia marina HOM05D005927 ORTHO05D006952 3.4e-11 72.0 93 45.2
Migut.N00426 Erythranthe guttata HOM05D005927 ORTHO05D006952 3.4e-11 72.0 114 39.5
VMungo0251G3792 Vigna mungo HOM05D005927 ORTHO05D006952 3.4e-11 72.0 111 37.8
Aa31LG8G10360 Aethionema arabicum HOM05D005927 ORTHO05D006952 4.4e-11 71.6 118 40.7
Lj4g0008619 Lotus japonicus HOM05D005927 ORTHO05D006952 5.8e-11 71.2 119 36.1
Hma1.2p1_2624F.1_g325620 Hydrangea macrophylla HOM05D005927 ORTHO05D006952 9.9e-11 70.5 106 39.6
TPR.G11873 Trifolium pratense HOM05D005927 ORTHO05D006952 9.9e-11 70.5 112 40.2
FAN07G0035 Fragaria x ananassa HOM05D005927 ORTHO05D006952 1.3e-10 70.1 110 41.8
Hma1.2p1_0349F.1_g131980 Hydrangea macrophylla HOM05D005927 ORTHO05D006952 1.7e-10 69.7 106 39.6
QL06p026881 Quercus lobata HOM05D005927 ORTHO05D006952 1.7e-10 69.7 90 44.4
Medtr8g083150 Medicago truncatula HOM05D005927 ORTHO05D006952 2.2e-10 69.3 108 39.8
Potri.001G321300 Populus trichocarpa HOM05D005927 ORTHO05D006952 2.2e-10 69.3 117 38.5
SalBow3G2584 Salvia bowleyana HOM05D005927 ORTHO05D006952 2.2e-10 69.3 123 37.4
Sed0010469 Sechium edule HOM05D005927 ORTHO05D006952 2.9e-10 68.9 112 42.0
CSS0025530 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 3.7e-10 68.6 113 38.9
FAN17G1175 Fragaria x ananassa HOM05D005927 ORTHO05D006952 3.7e-10 68.6 108 38.9
Gohir.D10G137100 Gossypium hirsutum HOM05D005927 ORTHO05D006952 3.7e-10 68.6 117 37.6
Gorai.011G152200 Gossypium raimondii HOM05D005927 ORTHO05D006952 3.7e-10 68.6 117 37.6
MD04G1018100 Malus domestica HOM05D005927 ORTHO05D006952 3.7e-10 68.6 111 39.6
CiPaw.01G115600 Carya illinoinensis HOM05D005927 ORTHO05D006952 6.4e-10 67.8 104 41.3
CsaV3_3G015740 Cucumis sativus L. HOM05D005927 ORTHO05D006952 6.4e-10 67.8 91 44.0
Eucgr.H02655 Eucalyptus grandis HOM05D005927 ORTHO05D006952 6.4e-10 67.8 114 37.7
Psat7g076040 Pisum sativum HOM05D005927 ORTHO05D006952 6.4e-10 67.8 103 41.7
RcHm_v2.0_Chr4g0413341 Rosa chinensis HOM05D005927 ORTHO05D006952 6.4e-10 67.8 106 40.6
Sp3g21500 Schrenkiella parvula HOM05D005927 ORTHO05D006952 8.3e-10 67.4 87 48.3
Gohir.A10G129100 Gossypium hirsutum HOM05D005927 ORTHO05D006952 1.1e-09 67.0 117 36.8
Cpa.g.sc157.40 Carica papaya HOM05D005927 ORTHO05D006952 1.4e-09 66.6 100 40.0
TWI09G0897 Tripterygium wilfordii HOM05D005927 ORTHO05D006952 1.4e-09 66.6 116 37.9
arahy.Tifrunner.gnm1.ann1.N45PRE Arachis hypogaea HOM05D005927 ORTHO05D006952 1.9e-09 66.2 107 39.3
Phvul.003G051400 Phaseolus vulgaris HOM05D005927 ORTHO05D006952 1.9e-09 66.2 111 35.1
Ah.13g077890 Amaranthus hybridus HOM05D005927 ORTHO05D006952 3.2e-09 65.5 96 39.6
CSS0015614 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 5.4e-09 64.7 102 36.3
CSS0029764 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 5.4e-09 64.7 86 43.0
Glyma.08G108200 Glycine max HOM05D005927 ORTHO05D006952 5.4e-09 64.7 125 36.0
Oeu056432.1 Olea europaea HOM05D005927 ORTHO05D006952 5.4e-09 64.7 117 35.9
CSS0010844 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 7.1e-09 64.3 102 36.3
Glyma.05G151400 Glycine max HOM05D005927 ORTHO05D006952 7.1e-09 64.3 125 36.0
SGA_v2.0_scaffold7G04055 Striga asiatica HOM05D005927 ORTHO05D006952 7.1e-09 64.3 87 40.2
PGSC0003DMG400026439 Solanum tuberosum HOM05D005927 ORTHO05D006952 9.2e-09 63.9 64 48.4
Hma1.2p1_1201F.1_g266720 Hydrangea macrophylla HOM05D005927 ORTHO05D006952 1.2e-08 63.5 111 41.4
CSS0000209 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 1.6e-08 63.2 102 35.3
Aqoxy2G03917 Aquilegia oxysepala HOM05D005927 ORTHO05D006952 3.5e-08 62.0 114 30.7
CSS0030768 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 4.6e-08 61.6 86 41.9
Haze_11664 Corylus avellana HOM05D005927 ORTHO05D006952 4.6e-08 61.6 106 39.6
CSS0027848 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 7.8e-08 60.8 86 39.5
CANSAT78G2028 Cannabis sativa HOM05D005927 ORTHO05D006952 7.8e-08 60.8 114 36.8
Thecc.04G193600 Theobroma cacao HOM05D005927 ORTHO05D006952 1.0e-07 60.5 79 44.3
Cfa008638 Carpinus fangiana HOM05D005927 ORTHO05D006952 1.3e-07 60.1 87 43.7
Lsat_1_v5_gn_2_47681 Lactuca sativa HOM05D005927 ORTHO05D006952 1.3e-07 60.1 62 46.8
Nn1g08158 Nelumbo nucifera HOM05D005927 ORTHO05D006952 1.3e-07 60.1 118 36.4
BraA03t13474Z Brassica rapa HOM05D005927 ORTHO05D006952 1.7e-07 59.7 63 49.2
EL10Ac3g07444 Beta vulgaris HOM05D005927 ORTHO05D006952 5.1e-07 58.2 85 38.8
PGR083G0017 Punica granatum HOM05D005927 ORTHO05D006952 5.1e-07 58.2 106 36.8
AUR62015303 Chenopodium quinoa HOM05D000668 ORTHO05D000516 8.6e-07 57.4 88 40.9
Rhsim09G0061200 Rhododendron simsii HOM05D005927 ORTHO05D006952 8.6e-07 57.4 109 34.9
CSS0021083 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 2.5e-06 55.8 84 38.1
BcaB03g14615 Brassica carinata HOM05D005927 ORTHO05D006952 3.3e-06 55.5 61 45.9
CiPaw.02G064100 Carya illinoinensis HOM05D005927 ORTHO05D006952 5.6e-06 54.7 112 35.7
DCAR_001205 Daucus carota HOM05D001053 ORTHO05D008021 5.6e-06 54.7 61 45.9
Ciclev10006252m.g Citrus clementina HOM05D005927 ORTHO05D006952 9.5e-06 53.9 101 38.6
Sed0016502 Sechium edule HOM05D005927 ORTHO05D006952 9.5e-06 53.9 114 32.5


User provided reference genes

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