Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR218780 Cardamine hirsuta HOM05D003484 ORTHO05D004152 1.4e-43 179.1 81 100.0
CARHR020230 Cardamine hirsuta HOM05D003484 ORTHO05D004152 1.3e-41 172.6 81 95.1
AT1G19710 Arabidopsis thaliana HOM05D003484 ORTHO05D004152 2.8e-41 171.4 81 95.1
Thhalv10007509m.g Eutrema salsugineum HOM05D003484 ORTHO05D004152 3.7e-41 171.0 81 93.8
AL1G32430 Arabidopsis lyrata HOM05D003484 ORTHO05D004152 8.3e-41 169.9 81 93.8
Carub.0001s1925 Capsella rubella HOM05D003484 ORTHO05D004152 1.4e-40 169.1 81 92.6
Sp1g17540 Schrenkiella parvula HOM05D003484 ORTHO05D004152 1.8e-40 168.7 81 92.6
Carub.0002s2229 Capsella rubella HOM05D003484 ORTHO05D004152 2.4e-40 168.3 81 92.6
A06p15830 Brassica napus HOM05D003484 ORTHO05D004152 3.1e-40 167.9 81 92.6
C05p18150 Brassica napus HOM05D003484 ORTHO05D004152 3.1e-40 167.9 81 92.6
BolC5t30522H Brassica oleracea HOM05D003484 ORTHO05D004152 3.1e-40 167.9 81 92.6
BraA06t24693Z Brassica rapa HOM05D003484 ORTHO05D004152 3.1e-40 167.9 81 92.6
Aa31LG7G4290 Aethionema arabicum HOM05D003484 ORTHO05D004152 9.1e-40 166.4 81 91.4
AL2G35370 Arabidopsis lyrata HOM05D003484 ORTHO05D004152 1.2e-39 166.0 81 91.4
BcaB07g31984 Brassica carinata HOM05D003484 ORTHO05D004152 1.2e-39 166.0 81 91.4
CARHR068810 Cardamine hirsuta HOM05D003484 ORTHO05D004152 2.0e-39 165.2 81 90.1
Aa31LG4G5630 Aethionema arabicum HOM05D003484 ORTHO05D004152 2.7e-39 164.9 81 90.1
Thhalv10018489m.g Eutrema salsugineum HOM05D003484 ORTHO05D004152 4.5e-39 164.1 81 90.1
THA.LOC104813813 Tarenaya hassleriana HOM05D003484 ORTHO05D004152 7.7e-39 163.3 81 90.1
AT1G75420 Arabidopsis thaliana HOM05D003484 ORTHO05D004152 1.3e-38 162.5 81 90.1
FvH4_2g39300 Fragaria vesca HOM05D003484 ORTHO05D004152 1.3e-38 162.5 81 88.9
Rhsim07G0243200 Rhododendron simsii HOM05D003484 ORTHO05D004152 2.3e-38 161.8 81 88.9
FAN20G2901 Fragaria x ananassa HOM05D003484 ORTHO05D004152 3.8e-38 161.0 81 87.7
FAN26G2370 Fragaria x ananassa HOM05D003484 ORTHO05D004152 3.8e-38 161.0 81 87.7
FAN27G3362 Fragaria x ananassa HOM05D003484 ORTHO05D004152 3.8e-38 161.0 81 87.7
FAN15G3469 Fragaria x ananassa HOM05D003484 ORTHO05D004152 6.5e-38 160.2 81 86.4
Prupe.1G374100 Prunus persica HOM05D003484 ORTHO05D004152 6.5e-38 160.2 81 87.7
MD15G1022300 Malus domestica HOM05D003484 ORTHO05D004152 1.1e-37 159.5 81 86.4
PGR083G0895 Punica granatum HOM05D003484 ORTHO05D004152 1.1e-37 159.5 81 87.7
Eucgr.F01601 Eucalyptus grandis HOM05D003484 ORTHO05D004152 1.5e-37 159.1 81 86.4
Dinv39458 Davidia involucrata HOM05D003484 ORTHO05D004152 2.5e-37 158.3 81 85.2
Sp5g30560 Schrenkiella parvula HOM05D003484 ORTHO05D004152 2.5e-37 158.3 81 87.7
TAR381G1532 Trochodendron aralioides HOM05D003484 ORTHO05D004152 2.5e-37 158.3 81 85.2
CARHR034620 Cardamine hirsuta HOM05D003484 ORTHO05D004152 3.2e-37 157.9 81 90.1
Cpa.g.sc99.5 Carica papaya HOM05D003484 ORTHO05D004152 3.2e-37 157.9 81 86.4
Hma1.2p1_0775F.1_g216570 Hydrangea macrophylla HOM05D003484 ORTHO05D004152 3.2e-37 157.9 81 84.0
RcHm_v2.0_Chr6g0301701 Rosa chinensis HOM05D003484 ORTHO05D004152 3.2e-37 157.9 81 85.2
Lj2A458T67 Lonicera japonica HOM05D003484 ORTHO05D004152 4.2e-37 157.5 81 87.7
Hund26891 Selenicereus undatus HOM05D003484 ORTHO05D004152 5.5e-37 157.1 81 84.0
Hund30417 Selenicereus undatus HOM05D003484 ORTHO05D004152 5.5e-37 157.1 81 84.0
CSS0040658 Camellia sinensis var. sinensis HOM05D003484 ORTHO05D004152 7.2e-37 156.8 81 84.0
DCAR_017312 Daucus carota HOM05D003484 ORTHO05D004152 7.2e-37 156.8 81 86.4
Lj4A208T85 Lonicera japonica HOM05D003484 ORTHO05D004152 7.2e-37 156.8 81 86.4
SGA_v2.0_scaffold326G48736 Striga asiatica HOM05D003484 ORTHO05D004152 7.2e-37 156.8 81 85.2
Sc26g0003390 Simmondsia chinensis HOM05D003484 ORTHO05D004152 9.5e-37 156.4 81 85.2
MBI10_g00745_MAGBIO Magnolia biondii HOM05D003484 ORTHO05D004152 1.2e-36 156.0 81 85.2
Nn5g29711 Nelumbo nucifera HOM05D003484 ORTHO05D004152 1.2e-36 156.0 81 85.2
QL02p009668 Quercus lobata HOM05D003484 ORTHO05D004152 1.2e-36 156.0 81 85.2
MSTRG.24276 Avicennia marina HOM05D003484 ORTHO05D004152 1.6e-36 155.6 81 85.2
vmacro17721 Vaccinium macrocarpon HOM05D003484 ORTHO05D004152 1.6e-36 155.6 81 85.2
CiPaw.08G060800 Carya illinoinensis HOM05D003484 ORTHO05D004152 2.1e-36 155.2 81 85.2
ClCG09G002810 Citrullus lanatus HOM05D003484 ORTHO05D004152 2.1e-36 155.2 81 84.0
Potri.005G118800 Populus trichocarpa HOM05D003484 ORTHO05D004152 2.1e-36 155.2 81 85.2
Sabra05G0097900 Salix brachista HOM05D003484 ORTHO05D004152 2.1e-36 155.2 81 85.2
GSVIVG01009775001 Vitis vinifera HOM05D003484 ORTHO05D004152 2.1e-36 155.2 81 81.5
Cfa013879 Carpinus fangiana HOM05D003484 ORTHO05D004152 3.6e-36 154.5 81 84.0
Rhsim08G0122800 Rhododendron simsii HOM05D003484 ORTHO05D004152 3.6e-36 154.5 81 84.0
Cfa006912 Carpinus fangiana HOM05D003484 ORTHO05D004152 4.7e-36 154.1 81 82.7
Haze_03844 Corylus avellana HOM05D003484 ORTHO05D004152 4.7e-36 154.1 81 82.7
Lalb_Chr14g0369551 Lupinus albus HOM05D003484 ORTHO05D004152 4.7e-36 154.1 81 84.0
ATR1154G013 Amborella trichopoda HOM05D003484 ORTHO05D004152 6.1e-36 153.7 81 82.7
Cc10_g02440 Coffea canephora HOM05D003484 ORTHO05D004152 6.1e-36 153.7 81 84.0
CsaV3_7G032510 Cucumis sativus L. HOM05D003484 ORTHO05D006651 6.1e-36 153.7 81 84.0
Duzib147G0644 Durio zibethinus HOM05D003484 ORTHO05D004152 6.1e-36 153.7 81 85.2
Lj5g0005857 Lotus japonicus HOM05D003484 ORTHO05D004152 6.1e-36 153.7 81 84.0
Nitab4.5_0000723g0130 Nicotiana tabacum HOM05D003484 ORTHO05D004152 6.1e-36 153.7 81 84.0
Nitab4.5_0003883g0010 Nicotiana tabacum HOM05D003484 ORTHO05D004152 6.1e-36 153.7 81 84.0
HanXRQChr09g0261231 Helianthus annuus HOM05D003484 ORTHO05D004152 8.0e-36 153.3 81 84.0
Manes.05G154900 Manihot esculenta HOM05D003484 ORTHO05D004152 8.0e-36 153.3 81 82.7
PGR119G1492 Punica granatum HOM05D003484 ORTHO05D004152 8.0e-36 153.3 81 82.7
Thecc.08G033900 Theobroma cacao HOM05D003484 ORTHO05D004152 8.0e-36 153.3 81 84.0
CANSAT25G0607 Cannabis sativa HOM05D003484 ORTHO05D004152 1.0e-35 152.9 81 84.0
ECA232G1269 Erigeron canadensis HOM05D003484 ORTHO05D004152 1.0e-35 152.9 81 84.0
Glyma.17G253700 Glycine max HOM05D003484 ORTHO05D004152 1.0e-35 152.9 81 84.0
Lsat_1_v5_gn_4_151800 Lactuca sativa HOM05D003484 ORTHO05D004152 1.0e-35 152.9 81 84.0
QL06p035065 Quercus lobata HOM05D003484 ORTHO05D004152 1.0e-35 152.9 81 82.7
Sed0000171 Sechium edule HOM05D003484 ORTHO05D004152 1.0e-35 152.9 81 84.0
PGSC0003DMG400003612 Solanum tuberosum HOM05D003484 ORTHO05D004152 1.0e-35 152.9 81 84.0
Atru.chr13.405 Acer truncatum HOM05D003484 ORTHO05D004152 1.4e-35 152.5 81 84.0
CAN.G358.31 Capsicum annuum HOM05D003484 ORTHO05D004152 1.4e-35 152.5 81 84.0
Dinv40029 Davidia involucrata HOM05D003484 ORTHO05D004152 1.4e-35 152.5 81 82.7
PSO675G7417 Papaver somniferum HOM05D003484 ORTHO05D004152 1.4e-35 152.5 81 84.0
Peaxi162Scf00418g00928 Petunia axillaris HOM05D003484 ORTHO05D004152 1.4e-35 152.5 81 82.7
Psat5g015440 Pisum sativum HOM05D003484 ORTHO05D004152 1.4e-35 152.5 81 84.0
Potri.002G031300 Populus trichocarpa HOM05D003484 ORTHO05D004152 1.4e-35 152.5 81 82.7
Sabra02G0025100 Salix brachista HOM05D003484 ORTHO05D004152 1.4e-35 152.5 81 82.7
Actinidia29806 Actinidia chinensis HOM05D003484 ORTHO05D004152 1.8e-35 152.1 81 82.7
PSO210G1712 Papaver somniferum HOM05D003484 ORTHO05D004152 1.8e-35 152.1 81 81.5
PSO447G0175 Papaver somniferum HOM05D003484 ORTHO05D004152 1.8e-35 152.1 81 81.5
EL10Ac1g00611 Beta vulgaris HOM05D003484 ORTHO05D004152 2.3e-35 151.8 81 81.5
arahy.Tifrunner.gnm1.ann1.2B58VD Arachis hypogaea HOM05D003484 ORTHO05D004152 3.0e-35 151.4 81 82.7
arahy.Tifrunner.gnm1.ann1.66HKGP Arachis hypogaea HOM05D003484 ORTHO05D004152 3.0e-35 151.4 81 82.7
CSS0005468 Camellia sinensis var. sinensis HOM05D003484 ORTHO05D004152 3.0e-35 151.4 81 84.0
Ca_02077_v3 Cicer arietinum L. HOM05D003484 ORTHO05D004152 3.0e-35 151.4 81 82.7
Lj1g0000425 Lotus japonicus HOM05D003484 ORTHO05D004152 3.0e-35 151.4 81 82.7
Phvul.009G060600 Phaseolus vulgaris HOM05D003484 ORTHO05D004152 3.0e-35 151.4 81 81.5
Prupe.7G161700 Prunus persica HOM05D003484 ORTHO05D004152 3.0e-35 151.4 81 80.2
Aqoxy6G01198 Aquilegia oxysepala HOM05D003484 ORTHO05D004152 4.0e-35 151.0 81 81.5
Glyma.06G029300 Glycine max HOM05D003484 ORTHO05D004152 4.0e-35 151.0 81 81.5
TPR.G12425 Trifolium pratense HOM05D003484 ORTHO05D004152 4.0e-35 151.0 81 82.7
CiPaw.07G051700 Carya illinoinensis HOM05D003484 ORTHO05D004152 5.2e-35 150.6 81 82.7
AUR62034522 Chenopodium quinoa HOM05D003484 ORTHO05D004152 5.2e-35 150.6 81 81.5
MELO3C023411.2 Cucumis melo HOM05D003484 ORTHO05D004152 5.2e-35 150.6 81 82.7
Duzib264G1245 Durio zibethinus HOM05D003484 ORTHO05D004152 5.2e-35 150.6 81 84.0
AUR62014479 Chenopodium quinoa HOM05D003484 ORTHO05D004152 6.8e-35 150.2 81 81.5
MD02G1139400 Malus domestica HOM05D003484 ORTHO05D004152 6.8e-35 150.2 81 79.0
Solyc02g084820.3 Solanum lycopersicum HOM05D003484 ORTHO05D004152 6.8e-35 150.2 81 82.7
Sopen02g029490 Solanum pennellii HOM05D003484 ORTHO05D004152 6.8e-35 150.2 81 82.7
Actinidia26094 Actinidia chinensis HOM05D003484 ORTHO05D004152 8.8e-35 149.8 81 82.7
Ciclev10001031m.g Citrus clementina HOM05D003484 ORTHO05D004152 8.8e-35 149.8 81 81.5
Cc07_g10050 Coffea canephora HOM05D003484 ORTHO05D004152 8.8e-35 149.8 81 84.0
Manes.02G098300 Manihot esculenta HOM05D003484 ORTHO05D004152 8.8e-35 149.8 81 81.5
SalBow1G0941 Salvia bowleyana HOM05D003484 ORTHO05D004152 8.8e-35 149.8 81 81.5
Sed0018306 Sechium edule HOM05D003484 ORTHO05D004152 8.8e-35 149.8 81 80.2
TWI09G1204 Tripterygium wilfordii HOM05D003484 ORTHO05D004152 1.2e-34 149.4 81 84.0
Ciclev10025538m.g Citrus clementina HOM05D003484 ORTHO05D004152 1.5e-34 149.1 81 81.5
Duzib093G1138 Durio zibethinus HOM05D003484 ORTHO05D004152 1.5e-34 149.1 81 82.7
Migut.N00471 Erythranthe guttata HOM05D003484 ORTHO05D004152 1.5e-34 149.1 81 80.2
Medtr3g112280 Medicago truncatula HOM05D003484 ORTHO05D004152 1.5e-34 149.1 81 82.7
Gohir.A02G167700 Gossypium hirsutum HOM05D003484 ORTHO05D004152 2.0e-34 148.7 81 82.7
Gohir.D03G012300 Gossypium hirsutum HOM05D003484 ORTHO05D004152 2.0e-34 148.7 81 82.7
Gorai.003G012600 Gossypium raimondii HOM05D003484 ORTHO05D004152 2.0e-34 148.7 81 82.7
CSS0022746 Camellia sinensis var. sinensis HOM05D003484 ORTHO05D004152 2.6e-34 148.3 81 80.2
COL.COLO4_26239 Corchorus olitorius HOM05D003484 ORTHO05D004152 2.6e-34 148.3 81 79.0
PSO541G2144 Papaver somniferum HOM05D003484 ORTHO05D004152 3.4e-34 147.9 81 81.5
ECA246G2959 Erigeron canadensis HOM05D003484 ORTHO05D004152 4.4e-34 147.5 81 80.2
Lalb_Chr11g0062181 Lupinus albus HOM05D003484 ORTHO05D004152 4.4e-34 147.5 82 82.9
HPP92_016115 Vanilla planifolia HOM05D003484 ORTHO05D004152 4.4e-34 147.5 81 77.8
COL.COLO4_22006 Corchorus olitorius HOM05D003484 ORTHO05D004152 5.7e-34 147.1 81 80.2
FvH4_1g12520 Fragaria vesca HOM05D003484 ORTHO05D004152 5.7e-34 147.1 83 80.7
FAN19G1806 Fragaria x ananassa HOM05D003484 ORTHO05D004152 5.7e-34 147.1 83 80.7
FAN28G1582 Fragaria x ananassa HOM05D003484 ORTHO05D004152 5.7e-34 147.1 83 80.7
Gohir.A05G190400 Gossypium hirsutum HOM05D003484 ORTHO05D004152 5.7e-34 147.1 81 80.2
Gohir.D05G193800 Gossypium hirsutum HOM05D003484 ORTHO05D004152 5.7e-34 147.1 81 80.2
Gorai.009G198800 Gossypium raimondii HOM05D003484 ORTHO05D004152 5.7e-34 147.1 81 80.2
Gohir.A11G181400 Gossypium hirsutum HOM05D003484 ORTHO05D004152 7.5e-34 146.7 81 81.5
Gorai.007G199800 Gossypium raimondii HOM05D003484 ORTHO05D004152 7.5e-34 146.7 81 81.5
MD15G1252500 Malus domestica HOM05D003484 ORTHO05D004152 7.5e-34 146.7 81 77.8
Atru.chr3.681 Acer truncatum HOM05D003484 ORTHO05D004152 9.8e-34 146.4 81 81.5
Os01g0262600 Oryza sativa ssp. japonica HOM05D003484 ORTHO05D004152 1.3e-33 146.0 81 79.0
RcHm_v2.0_Chr2g0100451 Rosa chinensis HOM05D003484 ORTHO05D004152 1.3e-33 146.0 83 79.5
FAN26G2451 Fragaria x ananassa HOM05D003484 ORTHO05D004152 1.7e-33 145.6 83 79.5
Gohir.D11G188000 Gossypium hirsutum HOM05D003484 ORTHO05D004152 2.2e-33 145.2 81 79.0
TWI73G0581 Tripterygium wilfordii HOM05D003484 ORTHO05D004152 2.2e-33 145.2 81 82.7
THA.LOC104809282 Tarenaya hassleriana HOM05D003484 ORTHO05D004152 2.8e-33 144.8 117 62.4
FAN23G1432 Fragaria x ananassa HOM05D003484 ORTHO05D004152 4.9e-33 144.1 83 79.5
SEGI_00807 Sequoiadendron giganteum HOM05D003484 ORTHO05D004152 4.9e-33 144.1 81 76.5
Thecc.01G027500 Theobroma cacao HOM05D003484 ORTHO05D004152 4.9e-33 144.1 81 79.0
AagrBONN_evm.TU.Sc2ySwM_228.3091 Anthoceros agrestis HOM05D003484 ORTHO05D004152 6.3e-33 143.7 81 75.3
CANSAT01G1008 Cannabis sativa HOM05D003484 ORTHO05D004152 8.3e-33 143.3 81 77.8
VMungo0647G0645 Vigna mungo HOM05D003484 ORTHO05D004152 1.1e-32 142.9 81 77.8
unitig_26.g10035 Utricularia gibba HOM05D003484 ORTHO05D004152 3.1e-32 141.4 81 75.3
VMungo1309G0336 Vigna mungo HOM05D003484 ORTHO05D004152 5.4e-32 140.6 81 76.5
Haze_22558 Corylus avellana HOM05D003484 ORTHO05D004152 1.2e-31 139.4 109 62.4
SMO140G0050 Selaginella moellendorffii HOM05D003484 ORTHO05D004152 1.1e-29 132.9 82 73.2
Ah.14g085980 Amaranthus hybridus HOM05D003484 ORTHO05D004152 1.5e-29 132.5 81 70.4
Actinidia19218 Actinidia chinensis HOM05D003484 ORTHO05D004152 7.3e-29 130.2 67 86.6
SHI08628 Sapria himalayana HOM05D003484 ORTHO05D000014 9.5e-29 129.8 67 85.1
GSVIVG01018875001 Vitis vinifera HOM05D003484 ORTHO05D004152 2.1e-28 128.6 80 70.0
Glyma.04G029267 Glycine max HOM05D003484 ORTHO05D004152 8.0e-28 126.7 66 84.8
CSS0044139 Camellia sinensis var. sinensis HOM05D003484 ORTHO05D004152 4.9e-25 117.5 89 65.2
Pp3c9_7950 Physcomitrium patens HOM05D003484 ORTHO05D004152 6.4e-25 117.1 81 60.5
Lsat_1_v5_gn_3_74821 Lactuca sativa HOM05D003484 ORTHO05D004152 3.5e-23 111.3 81 65.4
HanXRQChr13g0393851 Helianthus annuus HOM05D003484 ORTHO05D004152 1.7e-22 109.0 113 50.4
vmacro22965 Vaccinium macrocarpon HOM05D003484 ORTHO05D004152 6.8e-19 97.1 81 59.3
BolC2t09289H Brassica oleracea HOM05D003484 ORTHO05D032554 1.5e-13 79.3 68 64.7
Zm00001eb128410 Zea mays HOM05D003484 ORTHO05D004152 2.5e-13 78.6 81 49.4
SMO338G0002 Selaginella moellendorffii HOM05D003484 ORTHO05D004152 1.1e-11 73.2 64 60.9
C02p32580 Brassica napus HOM05D003484 ORTHO05D032554 4.0e-11 71.2 67 61.2
CDE04G1483 Ceratophyllum demersum HOM05D003484 ORTHO05D004152 4.0e-11 71.2 81 46.9
Rhsim08G0122700 Rhododendron simsii HOM05D003484 ORTHO05D004152 5.4e-08 60.8 80 42.5
Glyma.14G070902 Glycine max HOM05D003484 ORTHO05D004152 9.2e-08 60.1 33 75.8
SMO140G0011 Selaginella moellendorffii HOM05D003484 ORTHO05D004152 1.2e-07 59.7 40 67.5


User provided reference genes

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