Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR218670 Cardamine hirsuta HOM05D005884 ORTHO05D007282 7.2e-85 317.4 183 100.0
Thhalv10026263m.g Eutrema salsugineum HOM05D005884 ORTHO05D007282 1.4e-43 180.3 199 61.3
BcaB03g16138 Brassica carinata HOM05D005884 ORTHO05D007282 2.2e-41 172.9 200 56.0
Sp7g10660 Schrenkiella parvula HOM05D005884 ORTHO05D007282 2.9e-41 172.6 209 55.0
A04p08870 Brassica napus HOM05D005884 ORTHO05D007282 1.3e-36 157.1 207 52.2
BraA04t16580Z Brassica rapa HOM05D005884 ORTHO05D007282 1.6e-36 156.8 209 52.2
BolC4t25837H Brassica oleracea HOM05D005884 ORTHO05D007282 8.1e-36 154.5 204 51.5
BcaC02g09439 Brassica carinata HOM05D005884 ORTHO05D007282 4.0e-35 152.1 204 51.0
Carub.0007s2947 Capsella rubella HOM05D005884 ORTHO05D007282 9.0e-35 151.0 193 55.4
AL9U10790 Arabidopsis lyrata HOM05D005884 ORTHO05D007282 2.6e-34 149.4 191 60.7
C04p42740 Brassica napus HOM05D005884 ORTHO05D007282 6.4e-33 144.8 204 50.5
Aa31LG9G4610 Aethionema arabicum HOM05D005884 ORTHO05D007282 3.7e-28 129.0 149 65.8
AT4G13200 Arabidopsis thaliana HOM05D005884 ORTHO05D007282 5.3e-27 125.2 192 56.2
TAR362G0919 Trochodendron aralioides HOM05D005884 ORTHO05D007282 1.6e-23 113.6 149 45.0
PGSC0003DMG400028009 Solanum tuberosum HOM05D005884 ORTHO05D007282 2.3e-22 109.8 154 45.5
DCAR_018555 Daucus carota HOM05D005884 ORTHO05D007282 5.1e-22 108.6 107 54.2
Sopen09g024260 Solanum pennellii HOM05D005884 ORTHO05D007282 1.5e-21 107.1 174 40.8
Solyc09g061440.4 Solanum lycopersicum HOM05D005884 ORTHO05D007282 1.9e-21 106.7 175 41.7
Thecc.01G227600 Theobroma cacao HOM05D005884 ORTHO05D007282 1.9e-21 106.7 174 40.8
Nn1g07794 Nelumbo nucifera HOM05D005884 ORTHO05D007282 4.3e-21 105.5 152 44.1
Aqoxy2G03761 Aquilegia oxysepala HOM05D005884 ORTHO05D007282 7.4e-21 104.8 121 49.6
Duzib133G0404 Durio zibethinus HOM05D005884 ORTHO05D007282 1.6e-20 103.6 190 38.9
CAN.G122.4 Capsicum annuum HOM05D005884 ORTHO05D007282 2.1e-20 103.2 89 59.6
QL02p021928 Quercus lobata HOM05D005884 ORTHO05D007282 2.8e-20 102.8 163 41.7
Cpa.g.sc8.170 Carica papaya HOM05D005884 ORTHO05D007282 4.8e-20 102.1 117 50.4
CiPaw.03G150900 Carya illinoinensis HOM05D005884 ORTHO05D007282 4.8e-20 102.1 182 43.4
Duzib138G0327 Durio zibethinus HOM05D005884 ORTHO05D007282 4.8e-20 102.1 114 50.0
Ciclev10022209m.g Citrus clementina HOM05D005884 ORTHO05D007282 6.2e-20 101.7 122 49.2
HanXRQChr01g0014641 Helianthus annuus HOM05D005884 ORTHO05D007282 8.2e-20 101.3 134 47.0
MSTRG.18383 Avicennia marina HOM05D005884 ORTHO05D007282 1.1e-19 100.9 170 41.8
Cc03_g12390 Coffea canephora HOM05D005884 ORTHO05D007282 1.1e-19 100.9 136 41.9
COL.COLO4_10043 Corchorus olitorius HOM05D003123 ORTHO05D007282 1.4e-19 100.5 113 49.6
Nitab4.5_0000866g0050 Nicotiana tabacum HOM05D005884 ORTHO05D007282 1.4e-19 100.5 126 47.6
Peaxi162Scf00107g01314 Petunia axillaris HOM05D005884 ORTHO05D007282 1.4e-19 100.5 89 60.7
Hma1.2p1_0351F.1_g132860 Hydrangea macrophylla HOM05D005884 ORTHO05D007282 2.4e-19 99.8 88 60.2
THA.LOC104808781 Tarenaya hassleriana HOM05D005884 ORTHO05D007282 2.4e-19 99.8 228 45.2
ECA248G2691 Erigeron canadensis HOM05D005884 ORTHO05D007282 3.1e-19 99.4 155 43.2
Nitab4.5_0003790g0020 Nicotiana tabacum HOM05D005884 ORTHO05D007282 3.1e-19 99.4 157 42.7
FAN15G1921 Fragaria x ananassa HOM05D005884 ORTHO05D007282 5.3e-19 98.6 161 42.2
CSS0032503 Camellia sinensis var. sinensis HOM05D005884 ORTHO05D007282 6.9e-19 98.2 81 64.2
Dinv04661 Davidia involucrata HOM05D005884 ORTHO05D007282 6.9e-19 98.2 122 48.4
Oeu015899.1 Olea europaea HOM05D005884 ORTHO05D007282 1.2e-18 97.4 185 40.5
Eucgr.H00802 Eucalyptus grandis HOM05D005884 ORTHO05D007282 1.5e-18 97.1 116 49.1
FAN27G0062 Fragaria x ananassa HOM05D005884 ORTHO05D007282 1.5e-18 97.1 164 42.1
PGR044G0377 Punica granatum HOM05D005884 ORTHO05D007282 1.5e-18 97.1 113 46.0
CSS0024949 Camellia sinensis var. sinensis HOM05D005884 ORTHO05D007282 2.0e-18 96.7 81 63.0
FAN15G1595 Fragaria x ananassa HOM05D005884 ORTHO05D007282 2.0e-18 96.7 163 42.9
Manes.13G044700 Manihot esculenta HOM05D005884 ORTHO05D007282 2.0e-18 96.7 91 53.8
THA.LOC104804605 Tarenaya hassleriana HOM05D005884 ORTHO05D007282 2.0e-18 96.7 123 54.5
Lj2A1133T33 Lonicera japonica HOM05D005884 ORTHO05D007282 2.6e-18 96.3 117 50.4
CANSAT01G0442 Cannabis sativa HOM05D005884 ORTHO05D007282 3.4e-18 95.9 186 44.6
Gohir.A07G156200 Gossypium hirsutum HOM05D005884 ORTHO05D007282 3.4e-18 95.9 117 48.7
FvH4_2g19250 Fragaria vesca HOM05D005884 ORTHO05D007282 4.5e-18 95.5 164 40.9
PSO017G2163 Papaver somniferum HOM05D005884 ORTHO05D007282 4.5e-18 95.5 128 46.9
Phvul.010G014200 Phaseolus vulgaris HOM05D005884 ORTHO05D007282 4.5e-18 95.5 151 43.7
Ca_20129_v3 Cicer arietinum L. HOM05D005884 ORTHO05D007282 5.8e-18 95.1 116 48.3
AUR62031836 Chenopodium quinoa HOM05D005884 ORTHO05D007282 7.6e-18 94.7 98 52.0
FAN24G3425 Fragaria x ananassa HOM05D005884 ORTHO05D007282 7.6e-18 94.7 164 42.1
TWI36G0226 Tripterygium wilfordii HOM05D005884 ORTHO05D007282 7.6e-18 94.7 126 47.6
Glyma.03G080200 Glycine max HOM05D005884 ORTHO05D007282 1.0e-17 94.4 148 40.5
HPP92_022492 Vanilla planifolia HOM05D005884 ORTHO05D007282 1.0e-17 94.4 104 49.0
Psat7g243200 Pisum sativum HOM05D005884 ORTHO05D007282 1.3e-17 94.0 134 46.3
GSVIVG01028583001 Vitis vinifera HOM05D005884 ORTHO05D007282 1.3e-17 94.0 161 39.1
Actinidia23729 Actinidia chinensis HOM05D005884 ORTHO05D007282 1.7e-17 93.6 171 39.2
Ah.08g213990 Amaranthus hybridus HOM05D005884 ORTHO05D007282 1.7e-17 93.6 129 46.5
CiPaw.04G106200 Carya illinoinensis HOM05D005884 ORTHO05D007282 1.7e-17 93.6 171 40.9
Migut.D00525 Erythranthe guttata HOM05D005884 ORTHO05D007282 1.7e-17 93.6 151 40.4
Medtr4g017880 Medicago truncatula HOM05D005884 ORTHO05D007282 1.7e-17 93.6 130 46.9
Potri.002G241000 Populus trichocarpa HOM05D005884 ORTHO05D007282 1.7e-17 93.6 197 36.0
RcHm_v2.0_Chr6g0285061 Rosa chinensis HOM05D005884 ORTHO05D007282 1.7e-17 93.6 101 49.5
MD05G1177500 Malus domestica HOM05D005884 ORTHO05D007282 2.2e-17 93.2 152 42.1
Rhsim01G0257200 Rhododendron simsii HOM05D005884 ORTHO05D007282 2.2e-17 93.2 120 45.0
Migut.N02263 Erythranthe guttata HOM05D005884 ORTHO05D007282 2.9e-17 92.8 152 42.8
Glyma.18G149300 Glycine max HOM05D005884 ORTHO05D007282 2.9e-17 92.8 95 50.5
Hund18350 Selenicereus undatus HOM05D005884 ORTHO05D007282 2.9e-17 92.8 171 39.8
Manes.12G041200 Manihot esculenta HOM05D005884 ORTHO05D007282 3.8e-17 92.4 167 40.7
Gohir.D07G162500 Gossypium hirsutum HOM05D005884 ORTHO05D007282 4.9e-17 92.0 188 38.3
Gorai.001G186100 Gossypium raimondii HOM05D005884 ORTHO05D007282 4.9e-17 92.0 188 38.3
Lsat_1_v5_gn_5_179880 Lactuca sativa HOM05D005884 ORTHO05D007282 4.9e-17 92.0 77 62.3
Lj3g0000124 Lotus japonicus HOM05D005884 ORTHO05D007282 1.1e-16 90.9 115 47.0
TPR.G8219 Trifolium pratense HOM05D005884 ORTHO05D007282 1.1e-16 90.9 130 46.9
PSO063G4085 Papaver somniferum HOM05D005884 ORTHO05D007282 1.4e-16 90.5 186 38.2
vmacro14762 Vaccinium macrocarpon HOM05D005884 ORTHO05D007282 1.9e-16 90.1 143 37.1
Sc05g0002430 Simmondsia chinensis HOM05D005884 ORTHO05D007282 2.5e-16 89.7 126 46.0
AUR62008873 Chenopodium quinoa HOM05D005884 ORTHO05D007282 3.2e-16 89.4 90 52.2
Lalb_Chr07g0194041 Lupinus albus HOM05D005884 ORTHO05D007282 3.2e-16 89.4 115 46.1
MBI07_g23671_MAGBIO Magnolia biondii HOM05D005884 ORTHO05D007282 4.2e-16 89.0 157 42.0
Prupe.8G204400 Prunus persica HOM05D005884 ORTHO05D007282 4.2e-16 89.0 147 42.9
TAR633G1722 Trochodendron aralioides HOM05D005884 ORTHO05D007282 5.5e-16 88.6 165 37.0
Dinv19212 Davidia involucrata HOM05D005884 ORTHO05D007282 1.2e-15 87.4 100 50.0
TWI18G1166 Tripterygium wilfordii HOM05D005884 ORTHO05D007282 1.6e-15 87.0 112 46.4
ClCG09G009110 Citrullus lanatus HOM05D005884 ORTHO05D007282 2.1e-15 86.7 150 40.7
Sabra02G0183600 Salix brachista HOM05D005884 ORTHO05D007282 3.5e-15 85.9 132 38.6
ATR0736G055 Amborella trichopoda HOM05D005884 ORTHO05D007282 4.6e-15 85.5 91 49.5
CsaV3_7G025830 Cucumis sativus L. HOM05D005884 ORTHO05D007282 4.6e-15 85.5 149 40.3
SalBow4G1286 Salvia bowleyana HOM05D005884 ORTHO05D007282 4.6e-15 85.5 176 39.8
EL10Ac7g17785 Beta vulgaris HOM05D005884 ORTHO05D007282 1.8e-14 83.6 148 43.9
MELO3C012764.2 Cucumis melo HOM05D005884 ORTHO05D007282 2.3e-14 83.2 156 39.7
Gorai.009G365800 Gossypium raimondii HOM05D005884 ORTHO05D007282 2.3e-14 83.2 116 46.6
arahy.Tifrunner.gnm1.ann1.Q3DN0U Arachis hypogaea HOM05D005884 ORTHO05D007282 3.0e-14 82.8 167 38.3
unitig_22.g6325 Utricularia gibba HOM05D005884 ORTHO05D007282 5.1e-14 82.0 160 36.9
MD10G1165900 Malus domestica HOM05D005884 ORTHO05D007282 6.7e-14 81.6 118 44.9
SGA_v2.0_scaffold8G04650 Striga asiatica HOM05D005884 ORTHO05D007282 8.7e-14 81.3 123 41.5
Haze_24787 Corylus avellana HOM05D005884 ORTHO05D007282 1.9e-13 80.1 119 45.4
Cfa002560 Carpinus fangiana HOM05D005884 ORTHO05D007282 2.5e-13 79.7 119 45.4
arahy.Tifrunner.gnm1.ann1.C60K2U Arachis hypogaea HOM05D005884 ORTHO05D007282 4.3e-13 79.0 171 36.3
Sed0001531 Sechium edule HOM05D005884 ORTHO05D007282 5.7e-13 78.6 159 37.1
MSTRG.17548 Avicennia marina HOM05D005884 ORTHO05D007282 1.6e-12 77.0 100 45.0
CDE02G3372 Ceratophyllum demersum HOM05D005884 ORTHO05D007282 1.6e-12 77.0 144 38.9
MBI10_g44186_MAGBIO Magnolia biondii HOM05D005884 ORTHO05D007282 6.3e-12 75.1 97 44.3
TAR194G0001 Trochodendron aralioides HOM05D005884 ORTHO05D004773 6.3e-12 75.1 144 38.9
Zm00001eb426500 Zea mays HOM05D005884 ORTHO05D007282 6.3e-12 75.1 92 46.7
Os04g0513000 Oryza sativa ssp. japonica HOM05D005884 ORTHO05D007282 1.1e-11 74.3 119 38.7
VMungo0331G1358 Vigna mungo HOM05D005884 ORTHO05D007282 1.8e-11 73.6 116 44.8
SEGI_25444 Sequoiadendron giganteum HOM05D005884 ORTHO05D007282 2.4e-11 73.2 124 37.1
Mapoly0028s0026 Marchantia polymorpha HOM05D005884 ORTHO05D007282 4.1e-11 72.4 114 47.4
Gohir.A09G200610 Gossypium hirsutum HOM05D005884 ORTHO05D007282 2.0e-10 70.1 72 54.2
MBI06_g14323_MAGBIO Magnolia biondii HOM05D005884 ORTHO05D007282 3.4e-10 69.3 128 37.5
Sed0008993 Sechium edule HOM05D005884 ORTHO05D007282 4.5e-10 68.9 87 46.0
AagrBONN_evm.TU.Sc2ySwM_228.3174 Anthoceros agrestis HOM05D005884 ORTHO05D007282 1.0e-09 67.8 59 54.2
Atru.chr3.3178 Acer truncatum HOM05D005884 ORTHO05D007282 2.9e-09 66.2 82 41.5
SalBow2G0198 Salvia bowleyana HOM05D005884 ORTHO05D007282 1.6e-07 60.5 101 42.6
Pp3c5_25810 Physcomitrium patens HOM05D005884 ORTHO05D007282 5.1e-06 55.5 113 31.0


User provided reference genes

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