Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR216910 Cardamine hirsuta HOM05D005150 ORTHO05D006070 8.6e-51 203.4 103 100.0
Carub.0007s3148 Capsella rubella HOM05D005150 ORTHO05D006070 6.0e-36 154.1 109 77.1
AL7G44580 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 1.9e-34 149.1 103 74.8
Sp7g06500 Schrenkiella parvula HOM05D005150 ORTHO05D006070 3.3e-34 148.3 108 75.0
A04p09910 Brassica napus HOM05D005150 ORTHO05D006070 4.3e-34 147.9 103 74.8
BraA04t16654Z Brassica rapa HOM05D005150 ORTHO05D006070 4.3e-34 147.9 103 74.8
BolC4t25919H Brassica oleracea HOM05D005150 ORTHO05D006070 1.2e-33 146.4 103 73.8
C04p43410 Brassica napus HOM05D005150 ORTHO05D006070 1.6e-33 146.0 103 73.8
BcaC02g09491 Brassica carinata HOM05D005150 ORTHO05D006070 3.6e-33 144.8 103 72.8
Aa31sc697G10 Aethionema arabicum HOM05D005150 ORTHO05D006070 2.6e-31 138.7 104 72.1
AT5G35732 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 5.4e-29 131.0 95 69.5
AT2G04795 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 3.5e-28 128.3 103 66.0
AL3G42390 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 1.0e-27 126.7 103 65.0
BcaB08g34491 Brassica carinata HOM05D005150 ORTHO05D006070 1.7e-27 125.9 103 67.0
A03p44460 Brassica napus HOM05D005150 ORTHO05D006070 3.9e-27 124.8 103 68.0
BraA03t13579Z Brassica rapa HOM05D005150 ORTHO05D006070 3.9e-27 124.8 103 68.0
Sp3g23410 Schrenkiella parvula HOM05D005150 ORTHO05D006070 6.6e-27 124.0 103 64.1
THA.LOC104826613 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 8.6e-27 123.6 104 67.3
BcaB06g26977 Brassica carinata HOM05D025437 ORTHO05D006070 1.1e-26 123.2 102 63.7
C03p55240 Brassica napus HOM05D005150 ORTHO05D006070 7.3e-26 120.6 103 63.1
BolC3t17797H Brassica oleracea HOM05D005150 ORTHO05D006070 7.3e-26 120.6 103 63.1
Aa31sc53G30 Aethionema arabicum HOM05D005150 ORTHO05D006070 9.5e-26 120.2 103 63.1
BcaC01g06899 Brassica carinata HOM05D005150 ORTHO05D006070 2.1e-25 119.0 103 62.1
THA.LOC104808855 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 2.1e-25 119.0 104 67.3
CARHR102770 Cardamine hirsuta HOM05D005150 ORTHO05D006070 2.4e-24 115.5 103 60.2
Duzib133G1369 Durio zibethinus HOM05D005150 ORTHO05D006070 7.1e-21 104.0 110 51.8
Thecc.01G187900 Theobroma cacao HOM05D005150 ORTHO05D006070 1.2e-20 103.2 111 52.3
Cfa014266 Carpinus fangiana HOM05D005150 ORTHO05D006070 2.7e-20 102.1 108 52.8
ClCG02G002530 Citrullus lanatus HOM05D005150 ORTHO05D006070 6.0e-20 100.9 112 49.1
ClCG02G002570 Citrullus lanatus HOM05D005150 ORTHO05D006070 6.0e-20 100.9 112 49.1
Haze_12715 Corylus avellana HOM05D005150 ORTHO05D006070 7.8e-20 100.5 108 50.9
CsaV3_7G002850 Cucumis sativus L. HOM05D005150 ORTHO05D006070 1.0e-19 100.1 110 49.1
Cpa.g.sc136.7 Carica papaya HOM05D005150 ORTHO05D006070 1.3e-19 99.8 116 50.0
Atru.chr6.3335 Acer truncatum HOM05D005150 ORTHO05D006070 2.3e-19 99.0 124 49.2
CiPaw.03G276700 Carya illinoinensis HOM05D005150 ORTHO05D006070 2.3e-19 99.0 109 49.5
Sed0012024 Sechium edule HOM05D005150 ORTHO05D006070 2.3e-19 99.0 108 49.1
MELO3C018891.2 Cucumis melo HOM05D005150 ORTHO05D006070 6.6e-19 97.4 111 51.4
FAN05G2177 Fragaria x ananassa HOM05D005150 ORTHO05D006070 1.1e-18 96.7 113 48.7
Sed0026674 Sechium edule HOM05D005150 ORTHO05D006070 1.1e-18 96.7 100 52.0
QL08p029214 Quercus lobata HOM05D005150 ORTHO05D006070 1.9e-18 95.9 111 46.8
Hma1.2p1_0133F.1_g061080 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 2.5e-18 95.5 112 49.1
RcHm_v2.0_Chr2g0156971 Rosa chinensis HOM05D005150 ORTHO05D006070 2.5e-18 95.5 113 47.8
Gohir.A07G189900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 7.3e-18 94.0 112 48.2
Gohir.D07G196100 Gossypium hirsutum HOM05D005150 ORTHO05D006070 7.3e-18 94.0 112 48.2
Gorai.001G219600 Gossypium raimondii HOM05D005150 ORTHO05D006070 7.3e-18 94.0 112 48.2
FAN02G0634 Fragaria x ananassa HOM05D005150 ORTHO05D006070 9.6e-18 93.6 113 47.8
Gohir.A11G150900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.6e-17 92.8 105 49.5
Gorai.007G167900 Gossypium raimondii HOM05D005150 ORTHO05D006070 1.6e-17 92.8 105 49.5
Phvul.008G205400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 2.8e-17 92.0 107 46.7
Carub.0003s2640 Capsella rubella HOM05D005150 ORTHO05D006070 3.6e-17 91.7 105 55.2
DCAR_012901 Daucus carota HOM05D005150 ORTHO05D006070 3.6e-17 91.7 109 50.5
Gohir.D11G157400 Gossypium hirsutum HOM05D005150 ORTHO05D006070 3.6e-17 91.7 105 48.6
VMungo0647G0767 Vigna mungo HOM05D005150 ORTHO05D006070 3.6e-17 91.7 107 46.7
Potri.002G222900 Populus trichocarpa HOM05D005150 ORTHO05D006070 4.8e-17 91.3 111 47.7
HanXRQChr10g0306371 Helianthus annuus HOM05D005150 ORTHO05D006070 8.1e-17 90.5 111 48.6
Rhsim06G0172200 Rhododendron simsii HOM05D005150 ORTHO05D006070 8.1e-17 90.5 113 49.6
Nn1g07416 Nelumbo nucifera HOM05D005150 ORTHO05D006070 1.1e-16 90.1 112 46.4
PGR142G3730 Punica granatum HOM05D005150 ORTHO05D006070 1.1e-16 90.1 103 47.6
FvH4_6g41440 Fragaria vesca HOM05D005150 ORTHO05D006070 1.4e-16 89.7 105 46.7
Rhsim06G0172300 Rhododendron simsii HOM05D005150 ORTHO05D006070 1.4e-16 89.7 114 49.1
Actinidia21452 Actinidia chinensis HOM05D005150 ORTHO05D006070 4.0e-16 88.2 110 41.8
CAN.G584.30 Capsicum annuum HOM05D005150 ORTHO05D006070 4.0e-16 88.2 108 43.5
Glyma.14G039800 Glycine max HOM05D005150 ORTHO05D006070 4.0e-16 88.2 108 47.2
Nn1g03285 Nelumbo nucifera HOM05D005150 ORTHO05D006070 9.0e-16 87.0 114 43.9
Phvul.006G020400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 9.0e-16 87.0 109 45.0
ECA234G4664 Erigeron canadensis HOM05D005150 ORTHO05D006070 1.2e-15 86.7 115 46.1
Sabra14G0124000 Salix brachista HOM05D005150 ORTHO05D006070 1.2e-15 86.7 112 46.4
Oeu029950.1 Olea europaea HOM05D005150 ORTHO05D006070 1.5e-15 86.3 112 44.6
vmacro12127 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 2.0e-15 85.9 114 45.6
DCAR_032165 Daucus carota HOM05D005150 ORTHO05D006070 3.4e-15 85.1 112 43.8
Ah.14g082900 Amaranthus hybridus HOM05D005150 ORTHO05D006070 5.8e-15 84.3 112 42.0
Hma1.2p1_0405F.1_g145660 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 5.8e-15 84.3 112 46.4
arahy.Tifrunner.gnm1.ann1.CR4AH5 Arachis hypogaea HOM05D005150 ORTHO05D006070 9.9e-15 83.6 112 44.6
arahy.Tifrunner.gnm1.ann1.V5U7H6 Arachis hypogaea HOM05D005150 ORTHO05D006070 9.9e-15 83.6 112 44.6
Glyma.13G073800 Glycine max HOM05D005150 ORTHO05D006070 9.9e-15 83.6 112 42.0
MD09G1119700 Malus domestica HOM05D005150 ORTHO05D006070 9.9e-15 83.6 123 42.3
Gorai.001G194000 Gossypium raimondii HOM05D005150 ORTHO05D006070 1.3e-14 83.2 113 46.9
Lj6g0009976 Lotus japonicus HOM05D005150 ORTHO05D006070 1.3e-14 83.2 111 41.4
LjContig00564g0005952 Lotus japonicus HOM05D005150 ORTHO05D006070 1.3e-14 83.2 108 45.4
Potri.014G162400 Populus trichocarpa HOM05D005150 ORTHO05D006070 1.7e-14 82.8 112 47.3
Medtr7g058970 Medicago truncatula HOM05D005150 ORTHO05D006070 2.9e-14 82.0 112 39.3
Gohir.A07G176012 Gossypium hirsutum HOM05D005150 ORTHO05D006070 3.8e-14 81.6 109 45.9
Aqoxy1G04044 Aquilegia oxysepala HOM05D005150 ORTHO05D006070 4.9e-14 81.3 104 43.3
MD17G1110500 Malus domestica HOM05D005150 ORTHO05D006070 4.9e-14 81.3 123 41.5
CSS0044074 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 6.4e-14 80.9 101 43.6
Manes.12G062667 Manihot esculenta HOM05D005150 ORTHO05D006070 6.4e-14 80.9 109 45.9
Manes.12G062700 Manihot esculenta HOM05D005150 ORTHO05D006070 6.4e-14 80.9 109 45.9
Ciclev10017035m.g Citrus clementina HOM05D005150 ORTHO05D006070 8.4e-14 80.5 102 48.0
Manes.13G063792 Manihot esculenta HOM05D005150 ORTHO05D006070 8.4e-14 80.5 115 46.1
Sopen07g002670 Solanum pennellii HOM05D005150 ORTHO05D006070 1.1e-13 80.1 92 47.8
Solyc07g006590.1 Solanum lycopersicum HOM05D005150 ORTHO05D006070 1.4e-13 79.7 91 47.3
ECA240G3606 Erigeron canadensis HOM05D005150 ORTHO05D006070 1.9e-13 79.3 111 44.1
CSS0010457 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 2.4e-13 79.0 107 43.9
CSS0040672 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 2.4e-13 79.0 107 43.9
Duzib138G1375 Durio zibethinus HOM05D005150 ORTHO05D006070 3.2e-13 78.6 104 42.3
Prupe.3G204400 Prunus persica HOM05D005150 ORTHO05D006070 3.2e-13 78.6 119 42.0
Lalb_Chr04g0249481 Lupinus albus HOM05D005150 ORTHO05D006070 4.2e-13 78.2 99 44.4
Lsat_1_v5_gn_9_105581 Lactuca sativa HOM05D005150 ORTHO05D006070 5.4e-13 77.8 109 43.1
Oeu040478.2 Olea europaea HOM05D005150 ORTHO05D006070 5.4e-13 77.8 109 44.0
EL10Ac9g22759 Beta vulgaris HOM05D005150 ORTHO05D006070 7.1e-13 77.4 116 40.5
Lsat_1_v5_gn_5_124661 Lactuca sativa HOM05D005150 ORTHO05D006070 7.1e-13 77.4 108 41.7
TPR.G12632 Trifolium pratense HOM05D005150 ORTHO05D006070 9.3e-13 77.0 100 41.0
TPR.G14637 Trifolium pratense HOM05D005150 ORTHO05D006070 1.2e-12 76.6 108 44.4
ClCG02G009450 Citrullus lanatus HOM05D005150 ORTHO05D006070 1.6e-12 76.3 109 46.8
COL.COLO4_25851 Corchorus olitorius HOM05D005150 ORTHO05D006070 1.6e-12 76.3 77 50.6
Glyma.02G276100 Glycine max HOM05D005150 ORTHO05D006070 1.6e-12 76.3 112 45.5
Lalb_Chr19g0125521 Lupinus albus HOM05D005150 ORTHO05D006070 1.6e-12 76.3 111 38.7
AUR62015079 Chenopodium quinoa HOM05D005150 ORTHO05D006070 2.1e-12 75.9 116 38.8
AUR62017541 Chenopodium quinoa HOM05D005150 ORTHO05D006070 2.1e-12 75.9 116 38.8
HanXRQChr03g0075721 Helianthus annuus HOM05D005150 ORTHO05D006070 2.7e-12 75.5 109 45.0
Rhsim04G0044800 Rhododendron simsii HOM05D005150 ORTHO05D006070 2.7e-12 75.5 105 40.0
MELO3C019368.2 Cucumis melo HOM05D005150 ORTHO05D006070 3.5e-12 75.1 109 43.1
CsaV3_6G009360 Cucumis sativus L. HOM05D005150 ORTHO05D006070 4.6e-12 74.7 109 45.0
Medtr5g088550 Medicago truncatula HOM05D005150 ORTHO05D006070 4.6e-12 74.7 104 44.2
TAR629G0945 Trochodendron aralioides HOM05D005150 ORTHO05D006070 6.0e-12 74.3 100 41.0
TAR624G1342 Trochodendron aralioides HOM05D005150 ORTHO05D006070 7.8e-12 73.9 97 40.2
Lsat_1_v5_gn_7_95641 Lactuca sativa HOM05D005150 ORTHO05D006070 1.0e-11 73.6 113 39.8
Lj1g0017552 Lotus japonicus HOM05D005150 ORTHO05D006070 1.3e-11 73.2 90 44.4
Ah.01g002180 Amaranthus hybridus HOM05D005150 ORTHO05D006070 1.7e-11 72.8 101 40.6
AUR62005176 Chenopodium quinoa HOM05D005150 ORTHO05D006070 1.7e-11 72.8 108 39.8
Eucgr.K00667 Eucalyptus grandis HOM05D005150 ORTHO05D006070 1.7e-11 72.8 113 45.1
AUR62000791 Chenopodium quinoa HOM05D005150 ORTHO05D006070 3.0e-11 72.0 108 38.9
DCAR_021114 Daucus carota HOM05D005150 ORTHO05D006070 1.9e-10 69.3 93 45.2
HanXRQChr04g0126761 Helianthus annuus HOM05D005150 ORTHO05D006070 1.9e-10 69.3 97 42.3
Oeu012338.1 Olea europaea HOM05D005150 ORTHO05D006070 2.5e-10 68.9 53 62.3
PSO541G4821 Papaver somniferum HOM05D005150 ORTHO05D006070 4.3e-10 68.2 114 38.6
HanXRQChr17g0535431 Helianthus annuus HOM05D005150 ORTHO05D006070 5.6e-10 67.8 104 40.4
Dinv07836 Davidia involucrata HOM05D005150 ORTHO05D006070 9.6e-10 67.0 98 42.9
Sc06g0009750 Simmondsia chinensis HOM05D005150 ORTHO05D006070 3.6e-09 65.1 106 38.7
vmacro12128 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 3.6e-09 65.1 114 41.2
PSO675G4632 Papaver somniferum HOM05D005150 ORTHO05D006070 4.8e-09 64.7 114 37.7
TWI36G0863 Tripterygium wilfordii HOM05D005150 ORTHO05D006070 4.8e-09 64.7 104 37.5
ECA236G2208 Erigeron canadensis HOM05D005150 ORTHO05D006070 9.0e-08 60.5 102 41.2
Nitab4.5_0000244g0100 Nicotiana tabacum HOM05D005150 ORTHO05D006070 1.5e-07 59.7 77 44.2
Sc21g0000930 Simmondsia chinensis HOM05D005150 ORTHO05D006070 2.0e-07 59.3 113 34.5
EL10Ac4g09390 Beta vulgaris HOM05D005150 ORTHO05D006070 2.6e-07 58.9 107 35.5
Sed0014772 Sechium edule HOM05D005150 ORTHO05D006070 2.6e-07 58.9 93 41.9
ATR0712G027 Amborella trichopoda HOM05D005150 ORTHO05D006070 4.5e-07 58.2 113 33.6
Ah.06g189600 Amaranthus hybridus HOM05D005150 ORTHO05D006070 5.8e-07 57.8 88 39.8
FAN14G4944 Fragaria x ananassa HOM05D008097 ORTHO05D006070 9.9e-07 57.0 67 40.3
Peaxi162Scf00942g00037 Petunia axillaris HOM05D005150 ORTHO05D006070 1.3e-06 56.6 89 38.2
Sed0002977 Sechium edule HOM05D005150 ORTHO05D006070 1.3e-06 56.6 105 40.0


User provided reference genes

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