Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR216660 Cardamine hirsuta HOM05D009566 ORTHO05D007629 4.2e-159 564.7 292 100.0
Sp7g06100 Schrenkiella parvula HOM05D009566 ORTHO05D007629 2.8e-91 339.3 318 61.9
AT5G36100 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 4.7e-86 322.0 297 64.0
Carub.0007s3177 Capsella rubella HOM05D009566 ORTHO05D007629 4.7e-86 322.0 306 61.8
Thhalv10005424m.g Eutrema salsugineum HOM05D009566 ORTHO05D007629 2.3e-85 319.7 301 65.4
A04p10080 Brassica napus HOM05D009566 ORTHO05D007629 1.2e-78 297.4 314 59.2
BcaC02g09508 Brassica carinata HOM05D009566 ORTHO05D007629 3.6e-78 295.8 312 58.7
BcaB06g27006 Brassica carinata HOM05D009566 ORTHO05D007629 1.0e-77 294.3 314 58.6
BraA04t16670Z Brassica rapa HOM05D009566 ORTHO05D007629 6.8e-77 291.6 319 58.3
BolC4t25935H Brassica oleracea HOM05D009566 ORTHO05D007629 4.4e-76 288.9 313 58.1
C04p43550 Brassica napus HOM05D009566 ORTHO05D007629 4.1e-74 282.3 313 57.5
BcaB02g08045 Brassica carinata HOM05D009566 ORTHO05D007629 3.0e-72 276.2 273 61.5
C02p21140 Brassica napus HOM05D009566 ORTHO05D007629 4.4e-60 235.7 281 50.5
A02p13020 Brassica napus HOM05D009566 ORTHO05D007629 1.1e-58 231.1 282 51.4
BcaC03g14675 Brassica carinata HOM05D009566 ORTHO05D007629 7.1e-58 228.4 319 45.5
BolC2t08254H Brassica oleracea HOM05D009566 ORTHO05D007629 1.7e-56 223.8 320 45.3
BraA02t06358Z Brassica rapa HOM05D009566 ORTHO05D007629 7.3e-55 218.4 334 44.3
Aa31LG9G17880 Aethionema arabicum HOM05D009566 ORTHO05D007629 8.9e-53 211.5 353 43.6
THA.LOC104823805 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 5.8e-52 208.8 352 39.8
AT1G65090 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 1.7e-48 197.2 290 46.6
BcaB05g24082 Brassica carinata HOM05D009566 ORTHO05D007629 1.5e-47 194.1 330 41.5
AL2G19730 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 1.2e-46 191.0 314 44.6
AL7G45070 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 4.2e-42 176.0 147 61.9
Aa31LG2G2280 Aethionema arabicum HOM05D009566 ORTHO05D007629 6.4e-35 152.1 319 37.6
Thhalv10022484m.g Eutrema salsugineum HOM05D009566 ORTHO05D007629 2.1e-33 147.1 294 40.5
Sp5g19730 Schrenkiella parvula HOM05D009566 ORTHO05D007629 1.0e-32 144.8 201 44.8
Manes.08G105000 Manihot esculenta HOM05D007504 ORTHO05D007629 6.7e-24 115.5 367 28.3
Carub.0002s1043 Capsella rubella HOM05D009566 ORTHO05D007629 5.6e-23 112.5 210 41.9
THA.LOC104821804 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 5.6e-23 112.5 254 36.2
CARHR056580 Cardamine hirsuta HOM05D009566 ORTHO05D007629 1.1e-21 108.2 202 39.1
CDE05G2205 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 1.3e-19 101.3 295 26.4
SalBow6G5451 Salvia bowleyana HOM05D007504 ORTHO05D007629 8.4e-19 98.6 285 32.3
Sabra19G0056400 Salix brachista HOM05D007504 ORTHO05D007629 7.1e-18 95.5 361 27.4
CDE05G0344 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 1.2e-17 94.7 299 26.4
Lalb_Chr21g0311381 Lupinus albus HOM05D007504 ORTHO05D007629 6.7e-16 89.0 378 24.9
Sed0012429 Sechium edule HOM05D007504 ORTHO05D007629 1.3e-14 84.7 350 26.6
MELO3C021807.2 Cucumis melo HOM05D007504 ORTHO05D007629 2.8e-14 83.6 373 27.1
Hund21875 Selenicereus undatus HOM05D007504 ORTHO05D007629 6.3e-14 82.4 451 24.4
Eucgr.H01377 Eucalyptus grandis HOM05D007504 ORTHO05D007629 8.2e-14 82.0 457 22.3
Ca_09972_v3 Cicer arietinum L. HOM05D007504 ORTHO05D007629 1.4e-13 81.3 98 42.9
FAN14G3522 Fragaria x ananassa HOM05D007504 ORTHO05D007629 1.4e-13 81.3 130 41.5
QL01p050471 Quercus lobata HOM05D007504 ORTHO05D007629 1.4e-13 81.3 75 50.7
Atru.chr12.1547 Acer truncatum HOM05D007504 ORTHO05D007629 1.8e-13 80.9 103 45.6
CiPaw.07G074500 Carya illinoinensis HOM05D007504 ORTHO05D007629 2.4e-13 80.5 170 36.5
Haze_04521 Corylus avellana HOM05D007504 ORTHO05D007629 2.4e-13 80.5 115 40.9
FvH4_6g00830 Fragaria vesca HOM05D007504 ORTHO05D007629 2.4e-13 80.5 130 41.5
FAN09G1848 Fragaria x ananassa HOM05D007504 ORTHO05D007629 2.4e-13 80.5 173 33.5
Cpa.g.sc123.14 Carica papaya HOM05D007504 ORTHO05D007629 3.1e-13 80.1 76 51.3
MD12G1258000 Malus domestica HOM05D007504 ORTHO05D007629 3.1e-13 80.1 96 47.9
TPR.G14656 Trifolium pratense HOM05D007504 ORTHO05D007629 3.1e-13 80.1 99 44.4
TWI14G0943 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 2.0e-12 77.4 453 25.2
TWI59G0549 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 2.0e-12 77.4 77 51.9
Cfa006286 Carpinus fangiana HOM05D007504 ORTHO05D007629 2.6e-12 77.0 442 23.8
TAR636G3585 Trochodendron aralioides HOM05D007504 ORTHO05D007629 3.4e-12 76.6 145 36.6
GSVIVG01019149001 Vitis vinifera HOM05D007504 ORTHO05D007629 3.4e-12 76.6 95 47.4
CSS0023929 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 4.5e-12 76.3 177 31.1
Psat6g051960 Pisum sativum HOM05D007504 ORTHO05D007629 4.5e-12 76.3 96 40.6
CSS0029071 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 7.6e-12 75.5 79 44.3
EL10Ac4g09412 Beta vulgaris HOM05D007504 ORTHO05D007629 1.0e-11 75.1 147 34.0
Dinv02913 Davidia involucrata HOM05D007504 ORTHO05D007629 1.0e-11 75.1 184 34.8
Lj7A601T114 Lonicera japonica HOM05D007504 ORTHO05D007629 1.0e-11 75.1 86 50.0
MBI07_g00623_MAGBIO Magnolia biondii HOM05D007504 ORTHO05D007629 1.3e-11 74.7 136 34.6
Ah.06g195770 Amaranthus hybridus HOM05D007504 ORTHO05D007629 2.2e-11 73.9 105 41.0
Gohir.D13G093400 Gossypium hirsutum HOM05D007504 ORTHO05D007629 2.2e-11 73.9 97 46.4
Gorai.002G147900 Gossypium raimondii HOM05D007504 ORTHO05D007629 2.2e-11 73.9 97 46.4
Potri.019G052300 Populus trichocarpa HOM05D007504 ORTHO05D007629 2.2e-11 73.9 451 22.4
Aqoxy2G03947 Aquilegia oxysepala HOM05D007504 ORTHO05D007629 2.9e-11 73.6 110 34.5
arahy.Tifrunner.gnm1.ann1.DN7JE5 Arachis hypogaea HOM05D007504 ORTHO05D007629 2.9e-11 73.6 105 37.1
arahy.Tifrunner.gnm1.ann1.V3BTAU Arachis hypogaea HOM05D007504 ORTHO05D007629 2.9e-11 73.6 105 37.1
CsaV3_1G037800 Cucumis sativus L. HOM05D007504 ORTHO05D007629 2.9e-11 73.6 369 23.6
Glyma.20G219900 Glycine max HOM05D007504 ORTHO05D007629 3.8e-11 73.2 96 44.8
Peaxi162Scf00994g00026 Petunia axillaris HOM05D007504 ORTHO05D007629 5.0e-11 72.8 154 32.5
Oeu008540.1 Olea europaea HOM05D007504 ORTHO05D007629 6.5e-11 72.4 117 40.2
DCAR_029902 Daucus carota HOM05D007504 ORTHO05D007629 8.5e-11 72.0 137 36.5
Lj5g0006161 Lotus japonicus HOM05D007504 ORTHO05D007629 8.5e-11 72.0 66 53.0
RcHm_v2.0_Chr3g0448301 Rosa chinensis HOM05D007504 ORTHO05D007629 8.5e-11 72.0 147 37.4
VMungo0720G1881 Vigna mungo HOM05D007504 ORTHO05D007629 1.1e-10 71.6 67 52.2
AUR62006721 Chenopodium quinoa HOM05D007504 ORTHO05D007629 1.4e-10 71.2 98 44.9
ClCG01G008930 Citrullus lanatus HOM05D007504 ORTHO05D007629 1.9e-10 70.9 364 24.2
PSO017G3378 Papaver somniferum HOM05D007504 ORTHO05D007629 1.9e-10 70.9 142 36.6
MD04G1241000 Malus domestica HOM05D007504 ORTHO05D007629 4.2e-10 69.7 96 43.8
Thecc.05G204700 Theobroma cacao HOM05D007504 ORTHO05D007629 4.2e-10 69.7 166 33.7
Ciclev10011923m.g Citrus clementina HOM05D007504 ORTHO05D007629 5.5e-10 69.3 166 32.5
Nitab4.5_0000276g0060 Nicotiana tabacum HOM05D007504 ORTHO05D007629 5.5e-10 69.3 255 27.5
Actinidia38910 Actinidia chinensis HOM05D007504 ORTHO05D007629 7.2e-10 68.9 151 32.5
Migut.F01885 Erythranthe guttata HOM05D007504 ORTHO05D007629 1.2e-09 68.2 169 29.0
Nitab4.5_0000456g0090 Nicotiana tabacum HOM05D007504 ORTHO05D007629 1.6e-09 67.8 219 29.2
COL.COLO4_06844 Corchorus olitorius HOM05D007504 ORTHO05D007629 2.1e-09 67.4 173 27.7
Duzib177G0136 Durio zibethinus HOM05D007504 ORTHO05D007629 2.1e-09 67.4 169 33.7
Rhsim09G0131100 Rhododendron simsii HOM05D007504 ORTHO05D007629 2.1e-09 67.4 174 31.6
SGA_v2.0_scaffold10G05147 Striga asiatica HOM05D007504 ORTHO05D007629 2.1e-09 67.4 391 23.3
ATR0609G092 Amborella trichopoda HOM05D007504 ORTHO05D007629 2.7e-09 67.0 75 48.0
Sc09g0001620 Simmondsia chinensis HOM05D007504 ORTHO05D007629 3.6e-09 66.6 71 45.1
Sc09g0001640 Simmondsia chinensis HOM05D007504 ORTHO05D007629 3.6e-09 66.6 71 45.1
CAN.G29.22 Capsicum annuum HOM05D007504 ORTHO05D007629 4.6e-09 66.2 77 46.8
Solyc04g051280.4 Solanum lycopersicum HOM05D007504 ORTHO05D007629 4.6e-09 66.2 202 27.7
Gohir.A13G089900 Gossypium hirsutum HOM05D007504 ORTHO05D007629 1.0e-08 65.1 202 29.7
Cc09_g03320 Coffea canephora HOM05D007504 ORTHO05D007629 1.3e-08 64.7 69 46.4
FAN05G3219 Fragaria x ananassa HOM05D007504 ORTHO05D007629 1.3e-08 64.7 66 48.5
Prupe.6G358500 Prunus persica HOM05D007504 ORTHO05D007629 1.3e-08 64.7 68 47.1
PGSC0003DMG400016931 Solanum tuberosum HOM05D007504 ORTHO05D007629 1.3e-08 64.7 176 30.7
Lsat_1_v5_gn_8_3001 Lactuca sativa HOM05D007504 ORTHO05D007629 1.8e-08 64.3 136 35.3
Phvul.010G077946 Phaseolus vulgaris HOM05D007504 ORTHO05D007629 2.3e-08 63.9 76 39.5
QL01p050434 Quercus lobata HOM05D007504 ORTHO05D007629 2.3e-08 63.9 69 44.9
Sopen04g022690 Solanum pennellii HOM05D007504 ORTHO05D007629 2.3e-08 63.9 75 44.0
Oeu014606.1 Olea europaea HOM05D007504 ORTHO05D007629 5.1e-08 62.8 68 45.6
CSS0043883 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 8.7e-08 62.0 66 43.9
SEGI_35581 Sequoiadendron giganteum HOM05D007504 ORTHO05D007629 8.7e-08 62.0 70 47.1
ECA233G2160 Erigeron canadensis HOM05D007504 ORTHO05D007629 1.1e-07 61.6 135 31.9
Phvul.010G077868 Phaseolus vulgaris HOM05D007504 ORTHO05D007629 1.1e-07 61.6 63 46.0
HPP92_009958 Vanilla planifolia HOM05D007504 ORTHO05D007629 1.5e-07 61.2 184 29.9
SHI33673 Sapria himalayana HOM05D007504 ORTHO05D000001 3.3e-07 60.1 65 44.6
Cpa.g.sc123.15 Carica papaya HOM05D007504 ORTHO05D007629 4.3e-07 59.7 57 54.4
PGR031G1611 Punica granatum HOM05D007504 ORTHO05D007629 4.3e-07 59.7 77 44.2
AUR62000366 Chenopodium quinoa HOM05D007504 ORTHO05D007629 7.4e-07 58.9 233 27.9
Medtr1g078420 Medicago truncatula HOM05D007504 ORTHO05D007629 7.4e-07 58.9 162 27.8
TAR636G2263 Trochodendron aralioides HOM05D007504 ORTHO05D007629 4.8e-06 56.2 104 31.7
HanXRQChr05g0156881 Helianthus annuus HOM05D007504 ORTHO05D007629 6.3e-06 55.8 73 42.5


User provided reference genes

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