Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 7.9e-280 966.5 484 100.0
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 9.6e-262 906.4 494 91.7
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 4.1e-260 901.0 491 92.1
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 7.6e-259 896.7 494 90.5
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 7.6e-259 896.7 494 90.9
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 3.2e-257 891.3 488 91.4
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 4.2e-257 891.0 490 91.0
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 5.5e-257 890.6 494 90.1
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 9.3e-257 889.8 494 90.7
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 7.9e-256 886.7 497 88.9
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 1.3e-255 885.9 492 89.8
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 1.8e-255 885.6 494 90.3
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 1.8e-255 885.6 493 90.1
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 2.3e-255 885.2 488 90.4
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 3.0e-255 884.8 497 88.7
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 3.0e-255 884.8 497 88.7
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 6.7e-255 883.6 492 89.6
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 1.9e-254 882.1 494 89.1
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 4.3e-254 880.9 494 89.7
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 3.7e-253 877.9 494 89.7
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 1.1e-252 876.3 494 89.5
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 1.1e-252 876.3 497 88.9
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 2.4e-252 875.2 505 87.1
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 6.9e-252 873.6 506 87.0
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 1.7e-250 869.0 483 90.1
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 8.5e-250 866.7 487 89.3
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 2.6e-235 818.5 488 83.2
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 3.7e-221 771.5 497 77.1
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 4.1e-220 768.1 493 77.5
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 7.0e-220 767.3 526 76.0
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 1.2e-216 756.5 486 77.6
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 1.6e-216 756.1 481 77.5
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 5.2e-215 751.1 495 76.4
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 8.8e-215 750.4 485 77.1
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 5.7e-214 747.7 493 75.9
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 1.7e-213 746.1 499 74.7
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 4.9e-213 744.6 494 75.9
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 8.3e-213 743.8 495 75.2
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 1.1e-212 743.4 475 77.1
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 5.4e-212 741.1 475 76.8
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 7.0e-212 740.7 496 74.8
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 9.2e-212 740.3 481 75.1
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 5.9e-211 737.6 489 74.8
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 1.3e-210 736.5 489 74.6
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.7e-210 736.1 489 74.4
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 1.7e-210 736.1 497 73.6
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 2.3e-210 735.7 494 74.9
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 3.8e-210 734.9 496 73.4
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 3.8e-210 734.9 496 73.6
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 3.8e-210 734.9 494 75.3
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 3.8e-210 734.9 486 74.9
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.1e-209 733.4 489 74.4
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 1.5e-209 733.0 499 74.5
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 1.9e-209 732.6 489 74.8
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 2.5e-209 732.3 493 73.8
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 3.3e-209 731.9 476 76.1
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 4.3e-209 731.5 488 74.4
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 5.6e-209 731.1 492 74.4
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 1.6e-208 729.6 488 74.4
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 2.1e-208 729.2 483 75.6
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 2.1e-208 729.2 483 75.6
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.8e-208 728.8 491 74.7
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 4.7e-208 728.0 482 75.1
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 6.1e-208 727.6 491 74.3
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 8.0e-208 727.2 491 74.5
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 8.0e-208 727.2 497 73.0
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 8.0e-208 727.2 497 73.0
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 1.8e-207 726.1 494 73.3
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 2.3e-207 725.7 489 73.8
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 4.0e-207 724.9 491 73.3
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 4.0e-207 724.9 496 73.2
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 8.9e-207 723.8 479 75.8
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 1.2e-206 723.4 485 74.4
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 1.2e-206 723.4 485 73.8
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 2.6e-206 722.2 474 75.1
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 1.7e-205 719.5 494 73.5
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 1.7e-205 719.5 477 74.2
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 2.9e-205 718.8 492 74.0
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 2.9e-205 718.8 491 73.3
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 8.3e-205 717.2 509 71.1
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 1.8e-204 716.1 478 74.5
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 3.2e-204 715.3 480 74.2
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 4.1e-204 714.9 500 71.6
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 7.0e-204 714.1 485 74.0
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 1.5e-201 706.4 480 72.9
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 2.8e-200 702.2 489 72.2
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 2.8e-200 702.2 478 72.6
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 3.6e-200 701.8 475 72.6
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 6.2e-200 701.0 492 71.7
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 4.0e-199 698.4 490 71.0
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 6.8e-199 697.6 521 68.3
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 2.6e-198 695.7 483 72.3
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 2.6e-198 695.7 483 72.3
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 2.0e-195 686.0 476 72.3
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 2.7e-195 685.6 523 68.1
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 6.0e-195 684.5 479 71.4
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 2.5e-193 679.1 481 70.3
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 3.6e-192 675.2 496 69.2
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 1.1e-191 673.7 492 68.1
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 6.4e-189 664.5 499 67.7
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 8.3e-189 664.1 486 67.7
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 3.2e-188 662.1 454 72.7
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 3.5e-187 658.7 492 69.1
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 3.3e-185 652.1 516 65.5
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 3.3e-185 652.1 485 66.6
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 4.7e-184 648.3 583 59.3
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 1.1e-183 647.1 491 66.6
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 1.4e-183 646.7 486 66.9
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 1.8e-183 646.4 497 65.6
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 4.0e-183 645.2 475 68.6
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 6.8e-183 644.4 474 66.7
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 7.6e-182 641.0 570 60.5
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 1.4e-180 636.7 486 66.0
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 4.1e-180 635.2 492 66.3
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 9.2e-180 634.0 498 67.1
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 4.6e-179 631.7 498 61.6
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 1.7e-178 629.8 500 62.0
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 1.5e-177 626.7 478 66.1
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 4.3e-177 625.2 478 66.1
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 8.1e-176 620.9 470 66.6
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.1e-175 620.5 496 65.9
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 1.8e-175 619.8 359 87.7
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 3.4e-174 615.5 481 65.5
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 4.9e-173 611.7 486 66.7
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.6e-168 596.7 400 73.8
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 9.0e-167 590.9 503 63.0
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 2.4e-159 566.2 503 57.3
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 2.2e-157 559.7 445 61.6
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 4.6e-155 552.0 378 73.8
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 5.1e-154 548.5 494 56.9
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 8.4e-149 531.2 300 88.3
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.0e-146 524.2 388 70.1
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 3.9e-146 522.3 395 67.6
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 1.9e-145 520.0 357 72.5
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 5.7e-145 518.5 549 53.2
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 7.4e-145 518.1 347 74.9
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.4e-142 509.2 343 75.5
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 2.1e-139 500.0 393 66.7
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 3.3e-129 466.1 356 68.3
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 2.6e-126 456.4 468 51.9
Gohir.1Z049318 Gossypium hirsutum HOM05D003643 ORTHO05D005001 1.5e-121 440.7 295 74.6
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 8.5e-117 424.9 392 59.4
Haze_13620 Corylus avellana HOM05D003643 ORTHO05D005001 4.8e-112 409.1 275 74.9
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.1e-111 406.4 280 72.5
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 5.9e-110 402.1 272 74.6
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 1.9e-87 327.4 233 71.7
Cfa025656 Carpinus fangiana HOM05D003643 ORTHO05D005001 3.5e-86 323.2 459 40.1
Atru.chr3.103 Acer truncatum HOM05D003643 ORTHO05D005001 3.4e-81 306.6 244 66.4
Phvul.003G000278 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 7.8e-78 295.4 187 78.6
Phvul.L008901 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.0e-73 280.8 181 74.6
DCAR_017792 Daucus carota HOM05D003643 ORTHO05D005001 5.4e-71 272.7 204 70.1
BolC8t48075H Brassica oleracea HOM05D003643 ORTHO05D018815 2.5e-68 263.8 138 94.2
SEGI_34727 Sequoiadendron giganteum HOM05D003643 ORTHO05D005001 5.1e-61 239.6 200 60.0
Psat6g162200 Pisum sativum HOM05D003643 ORTHO05D005001 2.3e-53 214.2 243 49.8
Lsat_1_v5_gn_5_36361 Lactuca sativa HOM05D003643 ORTHO05D018815 3.9e-53 213.4 144 71.5
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 6.6e-53 212.6 228 53.5
Atru.chr8.2585 Acer truncatum HOM05D003643 ORTHO05D005001 2.4e-50 204.1 153 68.6
ClCG01G009350 Citrullus lanatus HOM05D003643 ORTHO05D005001 1.5e-49 201.4 126 77.8
Peaxi162Scf00149g01017 Petunia axillaris HOM05D003643 ORTHO05D018815 9.9e-49 198.7 134 73.1
Atru.chr8.2696 Acer truncatum HOM05D003643 ORTHO05D005001 2.1e-46 191.0 288 44.4
CSS0009011 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 2.5e-39 167.5 114 68.4
ATR0712G001 Amborella trichopoda HOM05D003643 ORTHO05D023464 1.2e-38 165.2 110 72.7
Phvul.L001639 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 1.3e-35 155.2 93 77.4
Phvul.L008801 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 1.3e-35 155.2 93 77.4
CSS0015856 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 3.7e-35 153.7 114 65.8
CBR_g12037 Chara braunii HOM05D003643 ORTHO05D005001 5.3e-34 149.8 124 58.9
Haze_13621 Corylus avellana HOM05D003643 ORTHO05D018815 1.2e-25 122.1 69 85.5
ClCG01G009330 Citrullus lanatus HOM05D003643 ORTHO05D018815 8.5e-24 115.9 63 85.7
Gohir.A10G145401 Gossypium hirsutum HOM05D003643 ORTHO05D018815 3.2e-23 114.0 66 81.8
CSS0023685 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 5.5e-23 113.2 72 75.0
Lsat_1_v5_gn_5_135000 Lactuca sativa HOM05D003643 ORTHO05D005001 4.6e-22 110.2 97 61.9
Cc11_g00920 Coffea canephora HOM05D003643 ORTHO05D005001 1.8e-21 108.2 67 76.1
CSS0030804 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 3.9e-21 107.1 65 81.5
CSS0024414 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 3.3e-20 104.0 65 78.5
CSS0049868 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 9.7e-20 102.4 65 76.9
Psat0s3903g0040 Pisum sativum HOM05D003643 ORTHO05D005001 2.2e-19 101.3 65 83.1
Haze_13619 Corylus avellana HOM05D003643 ORTHO05D034905 2.8e-19 100.9 102 57.8
Lsat_1_v5_gn_5_54460 Lactuca sativa HOM05D003643 ORTHO05D005001 2.0e-17 94.7 174 36.8
CSS0012788 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 2.6e-17 94.4 77 66.2
CSS0032340 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 2.6e-12 77.8 48 66.7
HanXRQChr06g0180401 Helianthus annuus HOM05D003643 ORTHO05D005001 3.5e-09 67.4 48 66.7
BcaC03g13887 Brassica carinata HOM05D003643 ORTHO05D032482 1.1e-07 62.4 37 78.4
C02p10890 Brassica napus HOM05D003643 ORTHO05D032482 3.2e-07 60.8 36 77.8
BolC2t07159H Brassica oleracea HOM05D003643 ORTHO05D032482 3.2e-07 60.8 36 77.8
RcHm_v2.0_Chr5g0019801 Rosa chinensis HOM05D003643 ORTHO05D005001 7.2e-07 59.7 48 72.9


User provided reference genes

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