Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR215690 Cardamine hirsuta HOM05D005709 ORTHO05D006306 7.4e-25 116.3 55 100.0
AL8G43070 Arabidopsis lyrata HOM05D005709 ORTHO05D006306 4.2e-20 100.5 55 87.3
AT5G65490 Arabidopsis thaliana HOM05D005709 ORTHO05D006306 4.2e-20 100.5 55 87.3
CARHR279470 Cardamine hirsuta HOM05D005709 ORTHO05D006306 1.6e-19 98.6 55 87.3
Carub.0008s2634 Capsella rubella HOM05D005709 ORTHO05D006306 2.7e-19 97.8 55 85.5
Thhalv10003796m.g Eutrema salsugineum HOM05D005709 ORTHO05D006306 4.6e-19 97.1 54 87.0
Sp2g28570 Schrenkiella parvula HOM05D005709 ORTHO05D006306 4.6e-19 97.1 55 85.5
Aa31LG1G16510 Aethionema arabicum HOM05D005709 ORTHO05D006306 6.0e-19 96.7 55 83.6
BcaC01g02778 Brassica carinata HOM05D005709 ORTHO05D006306 1.3e-18 95.5 55 83.6
A06p32320 Brassica napus HOM05D005709 ORTHO05D006306 1.3e-18 95.5 55 83.6
C03p60550 Brassica napus HOM05D005709 ORTHO05D006306 1.3e-18 95.5 55 83.6
BraA06t26158Z Brassica rapa HOM05D005709 ORTHO05D006306 1.3e-18 95.5 55 83.6
BolC3t18312H Brassica oleracea HOM05D005709 ORTHO05D006306 8.7e-18 92.8 55 81.8
THA.LOC104809180 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 9.6e-17 89.4 55 76.4
Cpa.g.sc55.19 Carica papaya HOM05D005709 ORTHO05D006306 1.8e-15 85.1 55 74.5
MD11G1164000 Malus domestica HOM05D005709 ORTHO05D006306 2.4e-15 84.7 55 72.7
Cfa006877 Carpinus fangiana HOM05D005709 ORTHO05D006306 3.1e-15 84.3 55 70.9
MD03G1143200 Malus domestica HOM05D005709 ORTHO05D006306 4.0e-15 84.0 55 72.7
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 5.3e-15 83.6 53 75.5
Lj2g0012290 Lotus japonicus HOM05D005709 ORTHO05D006306 6.9e-15 83.2 55 70.9
Medtr5g032050 Medicago truncatula HOM05D005709 ORTHO05D006306 6.9e-15 83.2 55 70.9
Cc07_g14050 Coffea canephora HOM05D005709 ORTHO05D006306 9.0e-15 82.8 55 70.9
Phvul.002G146800 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 9.0e-15 82.8 55 70.9
Prupe.6G202100 Prunus persica HOM05D005709 ORTHO05D006306 9.0e-15 82.8 55 70.9
Medtr4g125890 Medicago truncatula HOM05D005709 ORTHO05D006306 1.5e-14 82.0 55 69.1
THA.LOC104821549 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 2.0e-14 81.6 55 72.7
Nitab4.5_0007624g0020 Nicotiana tabacum HOM05D005709 ORTHO05D006306 2.6e-14 81.3 53 73.6
TAR625G0141 Trochodendron aralioides HOM05D005709 ORTHO05D006306 2.6e-14 81.3 55 67.3
GSVIVG01007131001 Vitis vinifera HOM05D005709 ORTHO05D006306 2.6e-14 81.3 55 67.3
Nitab4.5_0013799g0010 Nicotiana tabacum HOM05D005709 ORTHO05D006306 3.4e-14 80.9 53 71.7
Ca_22702_v3 Cicer arietinum L. HOM05D005709 ORTHO05D006306 4.5e-14 80.5 55 69.1
Haze_03880 Corylus avellana HOM05D005709 ORTHO05D006306 4.5e-14 80.5 55 69.1
Glyma.09G199500 Glycine max HOM05D005709 ORTHO05D006306 4.5e-14 80.5 55 69.1
Sopen11g005470 Solanum pennellii HOM05D005709 ORTHO05D006306 4.5e-14 80.5 52 76.9
Duzib187G1076 Durio zibethinus HOM05D005709 ORTHO05D006306 5.8e-14 80.1 55 61.8
Lju188A3T31 Lonicera japonica HOM05D005709 ORTHO05D006306 5.8e-14 80.1 55 69.1
Hund16527 Selenicereus undatus HOM05D005709 ORTHO05D006306 5.8e-14 80.1 55 67.3
CSS0001510 Camellia sinensis var. sinensis HOM05D005709 ORTHO05D006306 7.6e-14 79.7 55 67.3
Solyc11g010660.2 Solanum lycopersicum HOM05D005709 ORTHO05D006306 7.6e-14 79.7 51 76.5
Thecc.01G090000 Theobroma cacao HOM05D005709 ORTHO05D006306 7.6e-14 79.7 55 63.6
FAN26G3468 Fragaria x ananassa HOM05D005709 ORTHO05D006306 1.0e-13 79.3 55 70.9
FAN28G2327 Fragaria x ananassa HOM05D005709 ORTHO05D006306 1.0e-13 79.3 55 70.9
Oeu002141.1 Olea europaea HOM05D005709 ORTHO05D006306 1.0e-13 79.3 55 65.5
Peaxi162Scf00474g00732 Petunia axillaris HOM05D005709 ORTHO05D006306 1.0e-13 79.3 53 71.7
QL06p035832 Quercus lobata HOM05D005709 ORTHO05D006306 1.0e-13 79.3 55 67.3
RcHm_v2.0_Chr2g0111161 Rosa chinensis HOM05D005709 ORTHO05D006306 1.0e-13 79.3 55 70.9
Sabra06G0105500 Salix brachista HOM05D005709 ORTHO05D006306 1.0e-13 79.3 52 73.1
Actinidia28821 Actinidia chinensis HOM05D005709 ORTHO05D006306 1.3e-13 79.0 53 67.9
FvH4_1g19610 Fragaria vesca HOM05D005709 ORTHO05D006306 1.3e-13 79.0 55 70.9
FAN19G1851 Fragaria x ananassa HOM05D005709 ORTHO05D006306 1.3e-13 79.0 55 70.9
Psat2g082080 Pisum sativum HOM05D005709 ORTHO05D006306 1.3e-13 79.0 55 69.1
TWI74G1439 Tripterygium wilfordii HOM05D005709 ORTHO05D006306 1.3e-13 79.0 55 65.5
CAN.G1344.19 Capsicum annuum HOM05D005709 ORTHO05D006306 1.7e-13 78.6 52 73.1
CiPaw.07G047300 Carya illinoinensis HOM05D005709 ORTHO05D006306 1.7e-13 78.6 55 65.5
Manes.12G125900 Manihot esculenta HOM05D005709 ORTHO05D006306 1.7e-13 78.6 55 65.5
VMungo1215G1966 Vigna mungo HOM05D005709 ORTHO05D006306 1.7e-13 78.6 55 67.3
Ah.02g123530 Amaranthus hybridus HOM05D005709 ORTHO05D006306 2.2e-13 78.2 55 65.5
Glyma.01G022800 Glycine max HOM05D005709 ORTHO05D006306 2.2e-13 78.2 55 67.3
SGA_v2.0_scaffold115G32123 Striga asiatica HOM05D005709 ORTHO05D006306 2.2e-13 78.2 55 61.8
Atru.chr3.1240 Acer truncatum HOM05D005709 ORTHO05D006306 2.9e-13 77.8 55 65.5
arahy.Tifrunner.gnm1.ann1.7T2SE7 Arachis hypogaea HOM05D005709 ORTHO05D006306 2.9e-13 77.8 53 67.9
arahy.Tifrunner.gnm1.ann1.IH5V0S Arachis hypogaea HOM05D005709 ORTHO05D006306 2.9e-13 77.8 53 67.9
Ciclev10025155m.g Citrus clementina HOM05D005709 ORTHO05D006306 2.9e-13 77.8 55 65.5
PGR102G2444 Punica granatum HOM05D005709 ORTHO05D006306 2.9e-13 77.8 53 67.9
CANSAT01G1032 Cannabis sativa HOM05D005709 ORTHO05D006306 3.8e-13 77.4 53 67.9
COL.COLO4_27357 Corchorus olitorius HOM05D005709 ORTHO05D006306 6.5e-13 76.6 55 61.8
Eucgr.H04723 Eucalyptus grandis HOM05D005709 ORTHO05D006306 6.5e-13 76.6 55 65.5
MELO3C016416.2 Cucumis melo HOM05D005709 ORTHO05D006306 8.4e-13 76.3 55 65.5
CsaV3_3G006890 Cucumis sativus L. HOM05D005709 ORTHO05D006306 8.4e-13 76.3 55 65.5
Gohir.A02G144800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 8.4e-13 76.3 55 60.0
Gorai.003G037400 Gossypium raimondii HOM05D005709 ORTHO05D006306 8.4e-13 76.3 55 60.0
Potri.006G134400 Populus trichocarpa HOM05D005709 ORTHO05D006306 1.1e-12 75.9 54 66.7
Dinv13597 Davidia involucrata HOM05D005709 ORTHO05D006306 1.4e-12 75.5 55 63.6
ECA238G0695 Erigeron canadensis HOM05D005709 ORTHO05D006306 1.4e-12 75.5 53 66.0
Migut.K00802 Erythranthe guttata HOM05D005709 ORTHO05D006306 1.4e-12 75.5 55 58.2
Lalb_Chr09g0325971 Lupinus albus HOM05D005709 ORTHO05D006306 1.4e-12 75.5 55 67.3
PGSC0003DMG400016130 Solanum tuberosum HOM05D005709 ORTHO05D006306 1.4e-12 75.5 51 70.6
TPR.G36731 Trifolium pratense HOM05D005709 ORTHO05D006306 1.4e-12 75.5 55 67.3
ClCG10G007760 Citrullus lanatus HOM05D005709 ORTHO05D006306 1.9e-12 75.1 55 63.6
HanXRQChr14g0442981 Helianthus annuus HOM05D005709 ORTHO05D006306 1.9e-12 75.1 53 62.3
PSO170G3043 Papaver somniferum HOM05D005709 ORTHO05D006306 1.9e-12 75.1 55 60.0
Rhsim08G0016800 Rhododendron simsii HOM05D005709 ORTHO05D006306 1.9e-12 75.1 55 60.0
Gohir.D03G035800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 2.5e-12 74.7 55 60.0
vmacro18553 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 3.2e-12 74.3 55 60.0
vmacro18555 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 3.2e-12 74.3 55 60.0
vmacro21792 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 3.2e-12 74.3 55 60.0
Aqoxy5G01380 Aquilegia oxysepala HOM05D005709 ORTHO05D006306 4.2e-12 73.9 55 61.8
EL10Ac6g15201 Beta vulgaris HOM05D005709 ORTHO05D006306 4.2e-12 73.9 55 61.8
Nn3g18597 Nelumbo nucifera HOM05D005709 ORTHO05D006306 5.5e-12 73.6 55 61.8
Sed0005807 Sechium edule HOM05D005709 ORTHO05D006306 5.5e-12 73.6 55 63.6
Zm00001eb040880 Zea mays HOM05D005709 ORTHO05D006306 1.6e-11 72.0 55 60.0
MBI16_g12470_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 2.7e-11 71.2 51 62.7
SHI21884 Sapria himalayana HOM05D005709 ORTHO05D006306 3.5e-11 70.9 55 56.4
vmacro21794 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 3.5e-11 70.9 55 58.2
ATR0763G252 Amborella trichopoda HOM05D005709 ORTHO05D006306 4.6e-11 70.5 55 60.0
Sc03g0000380 Simmondsia chinensis HOM05D005709 ORTHO05D006306 6.1e-11 70.1 52 65.4
unitig_32.g11802 Utricularia gibba HOM05D005709 ORTHO05D006306 7.9e-11 69.7 53 60.4
Os08g0447200 Oryza sativa ssp. japonica HOM05D005709 ORTHO05D006306 1.0e-10 69.3 55 56.4
HPP92_015350 Vanilla planifolia HOM05D005709 ORTHO05D006306 1.3e-10 68.9 55 61.8
TAR381G1594 Trochodendron aralioides HOM05D005709 ORTHO05D006306 1.8e-10 68.6 53 58.5
PSO675G1794 Papaver somniferum HOM05D005709 ORTHO05D006306 2.3e-10 68.2 53 56.6
SMO137G0394 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 3.0e-10 67.8 54 57.4
MBI16_g19593_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 5.1e-10 67.0 51 62.7
PSO017G1508 Papaver somniferum HOM05D005709 ORTHO05D006306 5.1e-10 67.0 46 63.0
Lsat_1_v5_gn_2_70300 Lactuca sativa HOM05D005709 ORTHO05D006306 2.5e-09 64.7 54 59.3
SEGI_11890 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 3.3e-09 64.3 52 57.7
SMO137G0085 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 4.3e-09 63.9 54 55.6
AUR62003667 Chenopodium quinoa HOM05D005709 ORTHO05D006306 7.4e-09 63.2 48 62.5
AUR62017977 Chenopodium quinoa HOM05D005709 ORTHO05D006306 7.4e-09 63.2 48 62.5
DCAR_010090 Daucus carota HOM05D005709 ORTHO05D006306 7.4e-09 63.2 55 52.7
Oeu031122.1 Olea europaea HOM05D005709 ORTHO05D006306 2.8e-08 61.2 54 53.7
Pp3c1_9650 Physcomitrium patens HOM05D005709 ORTHO05D006306 3.1e-07 57.8 50 52.0
Mapoly0135s0033 Marchantia polymorpha HOM05D005709 ORTHO05D006306 4.1e-07 57.4 52 50.0
SalBow5G5475 Salvia bowleyana HOM05D036480 ORTHO05D006306 5.3e-07 57.0 38 65.8
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.0e-05 52.8 53 54.7


User provided reference genes

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