Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR215400 Cardamine hirsuta HOM05D003263 ORTHO05D004801 0.0e+00 1502.6 749 100.0
Carub.0007s3268 Capsella rubella HOM05D003263 ORTHO05D004801 0.0e+00 1459.5 745 96.8
AT5G37510 Arabidopsis thaliana HOM05D003263 ORTHO05D004801 0.0e+00 1458.7 745 96.8
A04p10660 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1448.3 746 96.4
C04p44380 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1444.9 746 96.0
BcaB06g27086 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1443.7 746 96.1
BraA04t16733Z Brassica rapa HOM05D003263 ORTHO05D004801 0.0e+00 1442.6 746 95.8
AL7G46270 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1440.6 778 92.7
BcaC02g09578 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1440.2 746 95.7
BolC4t26009H Brassica oleracea HOM05D003263 ORTHO05D004801 0.0e+00 1440.2 746 95.7
Thhalv10027640m.g Eutrema salsugineum HOM05D003263 ORTHO05D004801 0.0e+00 1435.6 746 95.3
AL1G43210 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1406.0 745 92.8
Aa31LG9G17520 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1397.9 751 92.4
Aa31LG9G17530 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1396.7 745 92.6
THA.LOC104805635 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1361.3 748 89.4
THA.LOC104822242 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1331.6 747 86.7
Cpa.g.sc116.77 Carica papaya HOM05D003263 ORTHO05D004801 0.0e+00 1288.9 745 83.6
Potri.004G082800 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1256.5 745 81.7
Atru.chr1.2038 Acer truncatum HOM05D003263 ORTHO05D004801 0.0e+00 1255.7 745 81.9
Manes.02G078500 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1255.4 745 81.7
Potri.017G136133 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1255.4 745 82.1
Ciclev10019002m.g Citrus clementina HOM05D003263 ORTHO05D004801 0.0e+00 1254.2 745 82.3
Gohir.D07G183900 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1254.2 748 81.4
Lj6g0025109 Lotus japonicus HOM05D003263 ORTHO05D004801 0.0e+00 1248.4 746 81.4
Gorai.001G204300 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1246.1 746 81.4
Glyma.11G214800 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1244.2 747 81.4
Gohir.A07G176600 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1237.2 746 80.7
VMungo1383G2082 Vigna mungo HOM05D003263 ORTHO05D004801 0.0e+00 1236.5 746 80.4
Glyma.18G041700 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1236.1 746 81.0
Actinidia35722 Actinidia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1235.7 748 80.9
TWI77G0544 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1235.3 748 81.3
arahy.Tifrunner.gnm1.ann1.AUXW6G Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1234.6 745 80.8
Duzib133G1400 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1234.2 747 80.3
Thecc.04G063600 Theobroma cacao HOM05D003263 ORTHO05D004801 0.0e+00 1233.4 746 80.8
Gorai.001G197100 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1232.2 747 79.9
Duzib138G0925 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1231.1 746 81.0
COL.COLO4_13315 Corchorus olitorius HOM05D003263 ORTHO05D004801 0.0e+00 1230.7 745 80.5
Phvul.001G229000 Phaseolus vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1230.3 746 80.2
CSS0018871 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 0.0e+00 1229.9 745 80.7
TWI74G0116 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1227.6 748 80.6
Psat5g119880 Pisum sativum HOM05D003263 ORTHO05D004801 0.0e+00 1224.9 747 80.6
Prupe.3G165400 Prunus persica HOM05D003263 ORTHO05D004801 0.0e+00 1224.9 749 80.5
Lalb_Chr18g0053541 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1224.2 747 79.9
Dinv19049 Davidia involucrata HOM05D003263 ORTHO05D004801 0.0e+00 1223.4 746 80.0
MD09G1268900 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1223.0 750 80.0
TPR.G23206 Trifolium pratense HOM05D003263 ORTHO05D004801 0.0e+00 1223.0 746 80.4
HanXRQChr07g0191741 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1222.6 746 80.4
CiPaw.03G074100 Carya illinoinensis HOM05D003263 ORTHO05D004801 0.0e+00 1222.2 747 80.3
MD17G1267300 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1221.5 750 79.7
Medtr3g065130 Medicago truncatula HOM05D003263 ORTHO05D004801 0.0e+00 1219.9 745 80.1
Ca_17086_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 0.0e+00 1219.5 746 79.9
CAN.G222.62 Capsicum annuum HOM05D003263 ORTHO05D004801 0.0e+00 1218.8 745 79.6
Haze_14285 Corylus avellana HOM05D003263 ORTHO05D004801 0.0e+00 1218.0 746 80.6
CANSAT56G4352 Cannabis sativa HOM05D003263 ORTHO05D004801 0.0e+00 1214.9 748 80.1
Eucgr.J01621 Eucalyptus grandis HOM05D003263 ORTHO05D004801 0.0e+00 1214.9 748 79.9
FAN26G0816 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1213.0 747 80.1
TAR629G0765 Trochodendron aralioides HOM05D003263 ORTHO05D004801 0.0e+00 1212.6 750 80.1
Peaxi162Scf00464g00325 Petunia axillaris HOM05D003263 ORTHO05D004801 0.0e+00 1212.2 744 79.0
RcHm_v2.0_Chr3g0491991 Rosa chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1212.2 748 79.9
Cfa007786 Carpinus fangiana HOM05D003263 ORTHO05D004801 0.0e+00 1211.1 746 80.4
QL02p059434 Quercus lobata HOM05D003263 ORTHO05D004801 0.0e+00 1211.1 745 79.2
Sopen11g006260 Solanum pennellii HOM05D003263 ORTHO05D004801 0.0e+00 1209.1 744 79.3
FAN23G0774 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1208.0 746 80.0
ECA238G3173 Erigeron canadensis HOM05D003263 ORTHO05D004801 0.0e+00 1206.4 748 79.8
ClCG05G010610 Citrullus lanatus HOM05D003263 ORTHO05D004801 0.0e+00 1205.7 747 78.6
PGSC0003DMG400013309 Solanum tuberosum HOM05D003263 ORTHO05D004801 0.0e+00 1205.3 744 79.2
Solyc11g011470.2 Solanum lycopersicum HOM05D003263 ORTHO05D004801 0.0e+00 1204.9 746 79.2
FvH4_1g30070 Fragaria vesca HOM05D003263 ORTHO05D004801 0.0e+00 1203.7 745 79.3
Oeu030292.1 Olea europaea HOM05D003263 ORTHO05D004801 0.0e+00 1203.7 779 76.5
Aqoxy3G04075 Aquilegia oxysepala HOM05D003263 ORTHO05D004801 0.0e+00 1202.6 744 79.6
Nitab4.5_0011135g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1202.2 744 78.5
HanXRQChr14g0444641 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1200.7 745 79.7
Sed0016313 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1199.1 747 79.1
CsaV3_3G017880 Cucumis sativus L. HOM05D003263 ORTHO05D004801 0.0e+00 1198.3 749 78.4
Rhsim08G0019700 Rhododendron simsii HOM05D003263 ORTHO05D004801 0.0e+00 1198.0 800 75.2
SalBow5G3125 Salvia bowleyana HOM05D003263 ORTHO05D004801 0.0e+00 1198.0 748 79.4
Sed0005557 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1198.0 748 78.1
DCAR_014159 Daucus carota HOM05D003263 ORTHO05D004801 0.0e+00 1197.6 745 78.4
PGR042G3530 Punica granatum HOM05D003263 ORTHO05D004801 0.0e+00 1197.2 747 79.7
Manes.01G120700 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1194.9 745 78.4
SGA_v2.0_scaffold2G00947 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1194.1 747 79.0
MSTRG.3699 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1191.4 743 79.8
PSO017G4553 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1191.0 757 78.9
PSO478G1645 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1190.6 757 78.9
FAN19G0316 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1189.9 708 81.4
MELO3C020331.2 Cucumis melo HOM05D003263 ORTHO05D004801 0.0e+00 1187.9 749 77.7
EL10Ac2g03207 Beta vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1187.2 749 77.8
Ah.10g032470 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1186.8 741 78.3
Os03g0713400 Oryza sativa ssp. japonica HOM05D003263 ORTHO05D004801 0.0e+00 1185.6 709 81.2
Lsat_1_v5_gn_3_63961 Lactuca sativa HOM05D003263 ORTHO05D004801 0.0e+00 1184.9 748 78.5
Ah.10g032480 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1183.3 746 77.7
Zm00001eb216210 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1181.0 744 78.0
Sc14g0006900 Simmondsia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1180.6 746 77.7
Hund13092 Selenicereus undatus HOM05D003263 ORTHO05D004801 0.0e+00 1180.2 696 81.3
arahy.Tifrunner.gnm1.ann1.ZZ0CH2 Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1179.5 842 71.3
AUR62037782 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1179.5 748 77.0
MSTRG.15657 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1176.0 747 78.0
Migut.K00926 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1171.0 748 77.9
unitig_748.g8633 Utricularia gibba HOM05D003263 ORTHO05D004801 0.0e+00 1170.2 753 77.2
Zm00001eb055050 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1167.1 709 79.5
Migut.H02232 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1165.6 749 77.3
HPP92_020298 Vanilla planifolia HOM05D003263 ORTHO05D004801 0.0e+00 1160.6 739 76.6
Lalb_Chr15g0085021 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1153.3 746 76.1
CDE05G1320 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1134.8 756 74.7
Gohir.D07G176300 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1128.2 656 82.5
Gohir.A07G170100 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1123.6 656 82.3
AUR62042225 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1123.2 747 74.4
Cc07_g13220 Coffea canephora HOM05D003263 ORTHO05D004801 0.0e+00 1117.8 656 82.5
SGA_v2.0_scaffold108G30966 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1112.8 748 73.8
ATR0118G003 Amborella trichopoda HOM05D003263 ORTHO05D004801 0.0e+00 1106.7 732 74.6
SHI30113 Sapria himalayana HOM05D003263 ORTHO05D004801 0.0e+00 1102.4 751 72.8
Nitab4.5_0006562g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1100.1 664 80.7
vmacro18524 Vaccinium macrocarpon HOM05D003263 ORTHO05D004801 0.0e+00 1088.6 747 74.3
CDE05G1041 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1078.2 756 71.0
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 3.6e-308 1061.2 1053 55.1
GSVIVG01030914001 Vitis vinifera HOM05D003263 ORTHO05D004801 1.5e-306 1055.8 656 79.6
Nn4g24447 Nelumbo nucifera HOM05D003263 ORTHO05D004801 1.8e-299 1032.3 622 80.5
Dinv28178 Davidia involucrata HOM05D003263 ORTHO05D004801 2.0e-290 1002.3 748 68.7
SMO331G0029 Selaginella moellendorffii HOM05D003263 ORTHO05D004801 1.6e-279 966.1 677 67.2
Mapoly0153s0030 Marchantia polymorpha HOM05D003263 ORTHO05D004801 3.0e-278 961.8 677 68.7
AagrBONN_evm.TU.Sc2ySwM_228.2430 Anthoceros agrestis HOM05D003263 ORTHO05D004801 4.0e-275 951.4 678 67.0
Pp3c1_34100 Physcomitrium patens HOM05D003263 ORTHO05D004801 4.5e-274 948.0 677 67.7
Pp3c1_34110 Physcomitrium patens HOM05D003263 ORTHO05D004801 4.5e-274 948.0 677 67.7
Pp3c1_34140 Physcomitrium patens HOM05D003263 ORTHO05D004801 1.7e-273 946.0 677 67.5
Pp3c19_19270 Physcomitrium patens HOM05D003263 ORTHO05D004801 6.5e-273 944.1 685 67.4
arahy.Tifrunner.gnm1.ann1.5H82NF Arachis hypogaea HOM05D003263 ORTHO05D004801 7.0e-251 870.9 592 73.3
CBR_g6354 Chara braunii HOM05D003263 ORTHO05D004801 3.8e-249 865.1 680 61.9
arahy.Tifrunner.gnm1.ann1.RIP12T Arachis hypogaea HOM05D003263 ORTHO05D004801 3.6e-247 858.6 592 72.8
MCO08G340 Micromonas commoda HOM05D003263 ORTHO05D004801 4.7e-223 778.5 696 56.9
Cre12.g535950 Chlamydomonas reinhardtii HOM05D003263 ORTHO05D004801 1.0e-222 777.3 679 56.3
PRCOL_00000346 Prasinoderma coloniale HOM05D003263 ORTHO05D004801 2.9e-212 742.7 677 56.6
TAR371G0371 Trochodendron aralioides HOM05D003263 ORTHO05D004801 1.0e-201 707.6 675 58.8
Cfa025667 Carpinus fangiana HOM05D003263 ORTHO05D004801 2.9e-196 689.5 676 51.6
SpUN1596_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 7.9e-170 601.7 305 96.1
Haze_26802 Corylus avellana HOM05D003263 ORTHO05D004801 4.3e-168 595.9 700 44.9
Oeu062704.1 Olea europaea HOM05D003263 ORTHO05D004801 4.5e-157 559.3 321 85.4
SpUn1854_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 2.1e-154 550.4 293 90.8
arahy.Tifrunner.gnm1.ann1.HY7M04 Arachis hypogaea HOM05D000164 ORTHO05D004801 7.9e-154 548.5 361 73.1
Thecc.K0008100 Theobroma cacao HOM05D003263 ORTHO05D004801 5.7e-144 515.8 300 85.7
arahy.Tifrunner.gnm1.ann1.Z93KCA Arachis hypogaea HOM05D003263 ORTHO05D004801 2.1e-130 470.7 301 77.7
Oeu062706.1 Olea europaea HOM05D003263 ORTHO05D004801 1.2e-117 428.3 308 66.9
Potri.017G136950 Populus trichocarpa HOM05D003263 ORTHO05D004801 6.8e-105 386.0 236 77.5
Sabra17G0054900 Salix brachista HOM05D003263 ORTHO05D004801 7.0e-94 349.4 241 71.4
Thecc.K0008200 Theobroma cacao HOM05D003263 ORTHO05D004801 1.2e-93 348.6 219 77.6
Eucgr.J01637 Eucalyptus grandis HOM05D003263 ORTHO05D004801 2.6e-88 330.9 224 75.4
CSS0049015 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 5.4e-86 323.2 299 57.9
CSS0039899 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 3.5e-85 320.5 299 56.9
Oeu039332.1 Olea europaea HOM05D003263 ORTHO05D004801 5.6e-67 260.0 172 72.1
arahy.Tifrunner.gnm1.ann1.VKQW11 Arachis hypogaea HOM05D003263 ORTHO05D004801 1.1e-65 255.8 125 96.8
Actinidia28797 Actinidia chinensis HOM05D003263 ORTHO05D004801 2.0e-64 251.5 393 43.3
SEGI_21193 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 5.8e-64 250.0 175 72.6
Haze_27240 Corylus avellana HOM05D003263 ORTHO05D004801 7.9e-61 239.6 364 37.9
arahy.Tifrunner.gnm1.ann1.SN393R Arachis hypogaea HOM05D003263 ORTHO05D004801 1.3e-58 232.3 113 96.5
MD16G1264300 Malus domestica HOM05D003263 ORTHO05D004801 2.8e-58 231.1 260 50.4
HanXRQChr17g0559491 Helianthus annuus HOM05D003263 ORTHO05D004801 3.2e-46 191.0 140 70.7
SEGI_05320 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 6.0e-45 186.8 117 77.8
SEGI_04560 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 1.1e-41 176.0 164 57.3
VMungo0647G1524 Vigna mungo HOM05D003263 ORTHO05D004801 2.5e-38 164.9 102 73.5
QL04p097132 Quercus lobata HOM05D003263 ORTHO05D000041 5.1e-36 157.1 86 82.6
Sabra17G0112400 Salix brachista HOM05D003263 ORTHO05D003497 5.7e-35 153.7 122 63.9
CBR_g44347 Chara braunii HOM05D003263 ORTHO05D004801 2.2e-34 151.8 142 53.5
Migut.M00197 Erythranthe guttata HOM05D003263 ORTHO05D004801 1.0e-28 132.9 116 63.8
Ca_19082_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 2.3e-28 131.7 83 75.9
Hund13091 Selenicereus undatus HOM05D003263 ORTHO05D004801 1.5e-27 129.0 105 61.0
Cc04_g05630 Coffea canephora HOM05D003263 ORTHO05D004801 1.3e-26 125.9 139 50.4
MD16G1264400 Malus domestica HOM05D003263 ORTHO05D004801 6.3e-26 123.6 61 91.8
Hma1.2p1_1425F.1_g282850 Hydrangea macrophylla HOM05D003263 ORTHO05D004801 5.0e-23 114.0 99 61.6
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 8.5e-23 113.2 221 30.8
CSS0022568 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 4.2e-22 110.9 141 49.6
QL08p053439 Quercus lobata HOM05D003263 ORTHO05D004801 1.1e-14 86.3 49 77.6
TPR.G18971 Trifolium pratense HOM05D003263 ORTHO05D004801 1.1e-14 86.3 56 73.2
SEGI_40032 Sequoiadendron giganteum HOM05D003263 ORTHO05D024792 1.1e-11 76.3 42 85.7
TPR.G11234 Trifolium pratense HOM05D003263 ORTHO05D004801 9.7e-11 73.2 39 87.2
Cc00_g06720 Coffea canephora HOM05D003263 ORTHO05D004801 2.2e-10 72.0 38 89.5
Psat2g105960 Pisum sativum HOM05D000610 ORTHO05D037361 7.2e-06 57.0 35 71.4


User provided reference genes

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