Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR214910 Cardamine hirsuta HOM05D001081 ORTHO05D043476 8.4e-44 179.9 85 100.0
CARHR189220 Cardamine hirsuta HOM05D001081 ORTHO05D004708 1.9e-24 115.5 85 62.4
CARHR189240 Cardamine hirsuta HOM05D001081 ORTHO05D004708 2.5e-24 115.2 85 69.4
AL6G35710 Arabidopsis lyrata HOM05D001081 ORTHO05D004708 1.3e-23 112.8 85 60.0
BcaNung01219 Brassica carinata HOM05D001081 ORTHO05D004708 4.8e-23 110.9 85 58.8
C07p43490 Brassica napus HOM05D001081 ORTHO05D004708 4.8e-23 110.9 85 58.8
CARHR214900 Cardamine hirsuta HOM05D001081 ORTHO05D043476 8.2e-23 110.2 75 68.0
Carub.0006s2205 Capsella rubella HOM05D001081 ORTHO05D004708 1.8e-22 109.0 85 57.6
Thhalv10003512m.g Eutrema salsugineum HOM05D001081 ORTHO05D004708 1.8e-22 109.0 85 58.8
BolC7t44875H Brassica oleracea HOM05D001081 ORTHO05D004708 4.0e-22 107.8 85 57.6
AT5G24280 Arabidopsis thaliana HOM05D001081 ORTHO05D004708 2.6e-21 105.1 85 56.5
A06p35070 Brassica napus HOM05D001081 ORTHO05D004708 4.2e-19 97.8 85 55.3
BraA06t26428Z Brassica rapa HOM05D001081 ORTHO05D004708 4.2e-19 97.8 85 55.3
BcaNung01806 Brassica carinata HOM05D001081 ORTHO05D004708 6.7e-17 90.5 80 57.5
C07p43530 Brassica napus HOM05D001081 ORTHO05D004708 6.7e-17 90.5 80 57.5
BolC7t44880H Brassica oleracea HOM05D001081 ORTHO05D004708 6.7e-17 90.5 80 57.5
A06p35020 Brassica napus HOM05D001081 ORTHO05D004708 1.5e-16 89.4 80 58.8
Carub.0006s2204 Capsella rubella HOM05D001081 ORTHO05D024756 1.3e-12 76.3 84 47.6
Glyma.17G128700 Glycine max HOM05D001081 ORTHO05D004708 6.5e-12 73.9 78 44.9
THA.LOC104798901 Tarenaya hassleriana HOM05D001081 ORTHO05D004708 1.2e-10 69.7 63 54.0
CARHR189250 Cardamine hirsuta HOM05D001081 ORTHO05D004708 2.7e-10 68.6 56 57.1
Cfa016233 Carpinus fangiana HOM05D001081 ORTHO05D004708 2.7e-10 68.6 66 50.0
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 6.1e-10 67.4 75 46.7
Ca_12791_v3 Cicer arietinum L. HOM05D001081 ORTHO05D004708 1.4e-09 66.2 89 38.2
Thhalv10003513m.g Eutrema salsugineum HOM05D001081 ORTHO05D004708 1.4e-09 66.2 84 44.0
QL09p008772 Quercus lobata HOM05D001081 ORTHO05D004708 2.3e-09 65.5 70 47.1
Prupe.2G309600 Prunus persica HOM05D001081 ORTHO05D004708 1.1e-08 63.2 70 41.4
Lj4g0008522 Lotus japonicus HOM05D001081 ORTHO05D004708 3.3e-08 61.6 71 40.8
Thecc.03G199500 Theobroma cacao HOM05D001081 ORTHO05D004708 1.7e-07 59.3 84 41.7
Hma1.2p1_0404F.1_g145340 Hydrangea macrophylla HOM05D001081 ORTHO05D004708 1.4e-06 56.2 79 40.5
TAR375G0280 Trochodendron aralioides HOM05D001081 ORTHO05D004708 1.4e-06 56.2 82 40.2
Lj1C1018T17 Lonicera japonica HOM05D001081 ORTHO05D004708 1.8e-06 55.8 80 37.5
Lj1C1020T7 Lonicera japonica HOM05D001081 ORTHO05D004708 1.8e-06 55.8 80 37.5
RcHm_v2.0_Chr1g0380531 Rosa chinensis HOM05D001081 ORTHO05D004708 1.8e-06 55.8 66 40.9
CANSAT21G0069 Cannabis sativa HOM05D001081 ORTHO05D004708 4.1e-06 54.7 83 38.6
CANSAT21G2573 Cannabis sativa HOM05D001081 ORTHO05D004708 4.1e-06 54.7 83 38.6
Cpa.g.sc3.91 Carica papaya HOM05D001081 ORTHO05D004708 5.3e-06 54.3 61 41.0
FvH4_7g31511 Fragaria vesca HOM05D001081 ORTHO05D004708 5.3e-06 54.3 66 37.9
FvH4_7g31550 Fragaria vesca HOM05D001081 ORTHO05D004708 5.3e-06 54.3 66 40.9
Psat6g034720 Pisum sativum HOM05D001081 ORTHO05D004708 5.3e-06 54.3 74 40.5
Hma1.2p1_0404F.1_g145380 Hydrangea macrophylla HOM05D001081 ORTHO05D004708 6.9e-06 53.9 58 44.8


User provided reference genes

Program Settings