Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR213960 Cardamine hirsuta HOM05D003563 ORTHO05D005325 4.3e-77 291.2 142 100.0
CARHR181650 Cardamine hirsuta HOM05D003563 ORTHO05D005325 3.1e-35 152.1 119 72.3
Carub.0008s0621 Capsella rubella HOM05D003563 ORTHO05D005325 4.1e-35 151.8 119 72.3
AT5G42740 Arabidopsis thaliana HOM05D003563 ORTHO05D005325 5.3e-35 151.4 119 72.3
BcaC04g21978 Brassica carinata HOM05D003563 ORTHO05D005325 9.1e-35 150.6 119 72.3
A09p19900 Brassica napus HOM05D003563 ORTHO05D005325 9.1e-35 150.6 119 72.3
C09p25230 Brassica napus HOM05D003563 ORTHO05D005325 9.1e-35 150.6 119 72.3
BolC9t55419H Brassica oleracea HOM05D003563 ORTHO05D005325 9.1e-35 150.6 119 72.3
BraA09t37600Z Brassica rapa HOM05D003563 ORTHO05D005325 9.1e-35 150.6 119 72.3
Sp2g07360 Schrenkiella parvula HOM05D003563 ORTHO05D005325 9.1e-35 150.6 119 71.4
BcaB07g31057 Brassica carinata HOM05D003563 ORTHO05D005325 1.6e-34 149.8 119 71.4
BcaB07g31058 Brassica carinata HOM05D003563 ORTHO05D005325 1.6e-34 149.8 119 71.4
Thhalv10003173m.g Eutrema salsugineum HOM05D003563 ORTHO05D005325 2.6e-34 149.1 119 71.4
CARHR213980 Cardamine hirsuta HOM05D003563 ORTHO05D005325 1.7e-33 146.4 119 70.6
Aa31LG9G12790 Aethionema arabicum HOM05D003563 ORTHO05D005325 8.5e-33 144.1 119 68.1
Eucgr.F01561 Eucalyptus grandis HOM05D003563 ORTHO05D005325 8.0e-31 137.5 119 63.0
Solyc12g014380.3 Solanum lycopersicum HOM05D003563 ORTHO05D005325 2.3e-30 136.0 116 63.8
Atru.chr13.492 Acer truncatum HOM05D003563 ORTHO05D005325 5.2e-30 134.8 119 62.2
RcHm_v2.0_Chr6g0300881 Rosa chinensis HOM05D003563 ORTHO05D005325 5.2e-30 134.8 119 62.2
PGR083G2760 Punica granatum HOM05D003563 ORTHO05D005325 6.7e-30 134.4 119 60.5
FAN27G1814 Fragaria x ananassa HOM05D003563 ORTHO05D005325 8.8e-30 134.0 119 61.3
TWI56G0595 Tripterygium wilfordii HOM05D003563 ORTHO05D005325 8.8e-30 134.0 119 61.3
CSS0002435 Camellia sinensis var. sinensis HOM05D003563 ORTHO05D005325 1.2e-29 133.7 119 62.2
Hma1.2p1_0203F.1_g086419 Hydrangea macrophylla HOM05D003563 ORTHO05D005325 1.2e-29 133.7 124 58.9
THA.LOC104798643 Tarenaya hassleriana HOM05D003563 ORTHO05D005325 1.2e-29 133.7 112 64.3
Rhsim06G0034400 Rhododendron simsii HOM05D003563 ORTHO05D005325 1.5e-29 133.3 116 60.3
SalBow7G2312 Salvia bowleyana HOM05D003563 ORTHO05D005325 1.5e-29 133.3 116 62.1
Sopen12g006150 Solanum pennellii HOM05D003563 ORTHO05D005325 1.5e-29 133.3 116 62.1
FvH4_2g39910 Fragaria vesca HOM05D003563 ORTHO05D005325 2.0e-29 132.9 119 61.3
Zm00001eb059230 Zea mays HOM05D003563 ORTHO05D005325 2.0e-29 132.9 119 61.3
AUR62007425 Chenopodium quinoa HOM05D003563 ORTHO05D005325 2.6e-29 132.5 114 61.4
AUR62027308 Chenopodium quinoa HOM05D003563 ORTHO05D005325 2.6e-29 132.5 114 61.4
GSVIVG01009697001 Vitis vinifera HOM05D003563 ORTHO05D005325 2.6e-29 132.5 116 61.2
MSTRG.25165 Avicennia marina HOM05D003563 ORTHO05D005325 3.3e-29 132.1 116 61.2
CANSAT21G1125 Cannabis sativa HOM05D003563 ORTHO05D005325 3.3e-29 132.1 114 63.2
Haze_07272 Corylus avellana HOM05D003563 ORTHO05D005325 3.3e-29 132.1 119 61.3
Nitab4.5_0009269g0010 Nicotiana tabacum HOM05D003563 ORTHO05D005325 3.3e-29 132.1 119 61.3
Ciclev10000722m.g Citrus clementina HOM05D003563 ORTHO05D005325 4.4e-29 131.7 119 60.5
Peaxi162Scf00333g00512 Petunia axillaris HOM05D003563 ORTHO05D005325 4.4e-29 131.7 119 62.2
QL02p008438 Quercus lobata HOM05D003563 ORTHO05D005325 4.4e-29 131.7 119 61.3
Cpa.g.sc36.68 Carica papaya HOM05D003563 ORTHO05D005325 5.7e-29 131.3 123 58.5
Hma1.2p1_0105F.1_g050870 Hydrangea macrophylla HOM05D003563 ORTHO05D005325 5.7e-29 131.3 119 60.5
Hma1.2p1_0105F.1_g050873 Hydrangea macrophylla HOM05D003563 ORTHO05D005325 5.7e-29 131.3 119 60.5
Hma1.2p1_0105F.1_g050876 Hydrangea macrophylla HOM05D003563 ORTHO05D005325 5.7e-29 131.3 119 60.5
Hma1.2p1_0105F.1_g050879 Hydrangea macrophylla HOM05D003563 ORTHO05D005325 5.7e-29 131.3 119 60.5
Potri.008G118900 Populus trichocarpa HOM05D003563 ORTHO05D005325 5.7e-29 131.3 119 61.3
Ah.02g117440 Amaranthus hybridus HOM05D003563 ORTHO05D005325 7.5e-29 131.0 114 60.5
EL10Ac5g11903 Beta vulgaris HOM05D003563 ORTHO05D005325 7.5e-29 131.0 114 59.6
Lj4A41G56 Lonicera japonica HOM05D003563 ORTHO05D005325 7.5e-29 131.0 119 59.7
Nn5g29576 Nelumbo nucifera HOM05D003563 ORTHO05D005325 7.5e-29 131.0 124 57.3
CsaV3_2G028640 Cucumis sativus L. HOM05D003563 ORTHO05D005325 9.7e-29 130.6 129 55.8
Prupe.1G380500 Prunus persica HOM05D003563 ORTHO05D005325 9.7e-29 130.6 118 61.9
Nitab4.5_0000194g0210 Nicotiana tabacum HOM05D003563 ORTHO05D005325 1.3e-28 130.2 85 74.1
SGA_v2.0_scaffold54G19524 Striga asiatica HOM05D003563 ORTHO05D005325 1.3e-28 130.2 116 59.5
ClCG08G015170 Citrullus lanatus HOM05D003563 ORTHO05D005325 1.7e-28 129.8 87 71.3
HanXRQChr09g0268611 Helianthus annuus HOM05D003563 ORTHO05D005325 1.7e-28 129.8 124 57.3
Aqoxy6G01090 Aquilegia oxysepala HOM05D003563 ORTHO05D005325 2.2e-28 129.4 119 61.3
Ca_04241_v3 Cicer arietinum L. HOM05D003563 ORTHO05D005325 2.2e-28 129.4 119 59.7
MELO3C010936.2 Cucumis melo HOM05D003563 ORTHO05D005325 2.2e-28 129.4 116 59.5
ECA232G1124 Erigeron canadensis HOM05D003563 ORTHO05D005325 2.2e-28 129.4 119 58.0
Cfa018145 Carpinus fangiana HOM05D003563 ORTHO05D005325 2.8e-28 129.0 119 59.7
Dinv39412 Davidia involucrata HOM05D003563 ORTHO05D005325 2.8e-28 129.0 124 56.5
Medtr6g009330 Medicago truncatula HOM05D003563 ORTHO05D005325 2.8e-28 129.0 122 57.4
Psat1g077120 Pisum sativum HOM05D003563 ORTHO05D005325 2.8e-28 129.0 121 57.0
vmacro21635 Vaccinium macrocarpon HOM05D003563 ORTHO05D005325 2.8e-28 129.0 116 59.5
MD08G1034600 Malus domestica HOM05D003563 ORTHO05D005325 3.7e-28 128.6 85 72.9
Nn1g05025 Nelumbo nucifera HOM05D003563 ORTHO05D005325 3.7e-28 128.6 119 58.8
Thecc.08G025500 Theobroma cacao HOM05D003563 ORTHO05D005325 3.7e-28 128.6 85 72.9
TPR.G32590 Trifolium pratense HOM05D003563 ORTHO05D005325 3.7e-28 128.6 121 56.2
Glyma.06G032500 Glycine max HOM05D003563 ORTHO05D005325 4.8e-28 128.3 114 59.6
PSO675G8753 Papaver somniferum HOM05D003563 ORTHO05D005325 4.8e-28 128.3 85 74.1
Sed0015721 Sechium edule HOM05D003563 ORTHO05D005325 4.8e-28 128.3 85 71.8
Glyma.04G032600 Glycine max HOM05D003563 ORTHO05D005325 6.3e-28 127.9 114 59.6
Cc10_g02970 Coffea canephora HOM05D003563 ORTHO05D005325 8.2e-28 127.5 90 68.9
Dinv36074 Davidia involucrata HOM05D003563 ORTHO05D005325 8.2e-28 127.5 116 58.6
Migut.C00716 Erythranthe guttata HOM05D003563 ORTHO05D005325 8.2e-28 127.5 116 58.6
Lsat_1_v5_gn_4_119160 Lactuca sativa HOM05D003563 ORTHO05D005325 8.2e-28 127.5 124 54.0
MD15G1031400 Malus domestica HOM05D003563 ORTHO05D005325 8.2e-28 127.5 85 71.8
Oeu029861.1 Olea europaea HOM05D003563 ORTHO05D005325 8.2e-28 127.5 85 71.8
Phvul.009G057500 Phaseolus vulgaris HOM05D003563 ORTHO05D005325 8.2e-28 127.5 114 59.6
Sc02g0006230 Simmondsia chinensis HOM05D003563 ORTHO05D005325 8.2e-28 127.5 119 58.8
MSTRG.1282 Avicennia marina HOM05D003563 ORTHO05D005325 1.1e-27 127.1 116 58.6
DCAR_020972 Daucus carota HOM05D003563 ORTHO05D005325 1.1e-27 127.1 85 74.1
TAR381G1659 Trochodendron aralioides HOM05D003563 ORTHO05D005325 1.1e-27 127.1 124 55.6
CAN.G233.10 Capsicum annuum HOM05D003563 ORTHO05D005325 1.4e-27 126.7 116 59.5
Manes.05G160800 Manihot esculenta HOM05D003563 ORTHO05D005325 1.4e-27 126.7 114 60.5
Lalb_Chr23g0266621 Lupinus albus HOM05D003563 ORTHO05D005325 1.8e-27 126.3 114 58.8
PSO541G4717 Papaver somniferum HOM05D003563 ORTHO05D005325 1.8e-27 126.3 85 72.9
Sed0018414 Sechium edule HOM05D003563 ORTHO05D005325 1.8e-27 126.3 116 57.8
CiPaw.15G077500 Carya illinoinensis HOM05D003563 ORTHO05D005325 2.4e-27 125.9 90 66.7
Duzib093G1625 Durio zibethinus HOM05D003563 ORTHO05D005325 2.4e-27 125.9 87 70.1
Lj1g0022254 Lotus japonicus HOM05D003563 ORTHO05D005325 2.4e-27 125.9 114 57.9
Os06g0256500 Oryza sativa ssp. japonica HOM05D003563 ORTHO05D005325 2.4e-27 125.9 85 70.6
Glyma.19G017200 Glycine max HOM05D003563 ORTHO05D005325 3.1e-27 125.6 85 70.6
Manes.18G027800 Manihot esculenta HOM05D003563 ORTHO05D005325 3.1e-27 125.6 114 60.5
Os03g0776000 Oryza sativa ssp. japonica HOM05D003563 ORTHO05D005325 3.1e-27 125.6 119 58.8
Gohir.A01G116000 Gossypium hirsutum HOM05D003563 ORTHO05D005325 4.1e-27 125.2 112 60.7
Actinidia15322 Actinidia chinensis HOM05D003563 ORTHO05D005325 5.3e-27 124.8 116 56.9
Lj7C352G3 Lonicera japonica HOM05D003563 ORTHO05D005325 5.3e-27 124.8 119 58.0
VMungo1309G1719 Vigna mungo HOM05D003563 ORTHO05D005325 5.3e-27 124.8 114 58.8
Phvul.004G023500 Phaseolus vulgaris HOM05D003563 ORTHO05D005325 7.0e-27 124.4 87 69.0
Gohir.D01G104300 Gossypium hirsutum HOM05D003563 ORTHO05D005325 9.1e-27 124.0 112 59.8
Gorai.002G128400 Gossypium raimondii HOM05D003563 ORTHO05D005325 9.1e-27 124.0 112 59.8
VMungo0464G1044 Vigna mungo HOM05D003563 ORTHO05D005325 1.2e-26 123.6 85 69.4
ATR0057G040 Amborella trichopoda HOM05D003563 ORTHO05D005325 1.6e-26 123.2 85 70.6
HPP92_002716 Vanilla planifolia HOM05D003563 ORTHO05D005325 1.6e-26 123.2 116 58.6
arahy.Tifrunner.gnm1.ann1.7JQX15 Arachis hypogaea HOM05D003563 ORTHO05D005325 2.0e-26 122.9 116 56.9
CDE05G1619 Ceratophyllum demersum HOM05D003563 ORTHO05D005325 2.0e-26 122.9 119 56.3
Pp3c5_3820 Physcomitrium patens HOM05D003563 ORTHO05D005325 2.0e-26 122.9 114 56.1
Hund14325 Selenicereus undatus HOM05D003563 ORTHO05D005325 2.7e-26 122.5 85 69.4
Sabra08G0090300 Salix brachista HOM05D003563 ORTHO05D005325 3.5e-26 122.1 159 47.2
VMungo0464G1852 Vigna mungo HOM05D003563 ORTHO05D005325 3.5e-26 122.1 85 67.1
SEGI_25229 Sequoiadendron giganteum HOM05D003563 ORTHO05D005325 5.9e-26 121.3 124 54.0
AagrBONN_evm.TU.Sc2ySwM_344.3288 Anthoceros agrestis HOM05D003563 ORTHO05D005325 7.7e-26 120.9 85 68.2
arahy.Tifrunner.gnm1.ann1.UW0ZL7 Arachis hypogaea HOM05D003563 ORTHO05D005325 7.7e-26 120.9 116 56.0
AagrBONN_evm.TU.Sc2ySwM_368.1410 Anthoceros agrestis HOM05D003563 ORTHO05D005325 1.0e-25 120.6 85 68.2
SMO119G0154 Selaginella moellendorffii HOM05D003563 ORTHO05D005325 2.9e-25 119.0 85 65.9
Pp3c16_6380 Physcomitrium patens HOM05D003563 ORTHO05D005325 1.5e-24 116.7 87 60.9
Pp3c25_1860 Physcomitrium patens HOM05D003563 ORTHO05D005325 1.5e-24 116.7 87 60.9
PRCOL_00005031 Prasinoderma coloniale HOM05D003563 ORTHO05D005325 2.5e-24 115.9 85 63.5
CBR_g52178 Chara braunii HOM05D003563 ORTHO05D005325 4.2e-24 115.2 85 67.1
Pp3c6_18070 Physcomitrium patens HOM05D003563 ORTHO05D005325 9.4e-24 114.0 87 62.1
SHI08159 Sapria himalayana HOM05D003563 ORTHO05D005325 2.1e-23 112.8 85 64.7
unitig_37.g12990 Utricularia gibba HOM05D003563 ORTHO05D005325 2.1e-23 112.8 116 56.9
Mapoly0034s0044 Marchantia polymorpha HOM05D003563 ORTHO05D005325 1.0e-22 110.5 87 62.1
Cre03.g175400 Chlamydomonas reinhardtii HOM05D003563 ORTHO05D005325 1.4e-22 110.2 124 48.4
SMO340G0102 Selaginella moellendorffii HOM05D003563 ORTHO05D005325 3.0e-22 109.0 106 54.7
CBR_g3932 Chara braunii HOM05D003563 ORTHO05D005325 8.8e-22 107.5 85 62.4
MCO02G104 Micromonas commoda HOM05D003563 ORTHO05D005325 5.7e-21 104.8 88 58.0
Haze_17979 Corylus avellana HOM05D003563 ORTHO05D005325 4.1e-19 98.6 57 77.2
CDE11G0237 Ceratophyllum demersum HOM05D003563 ORTHO05D005325 1.0e-17 94.0 92 56.5
PRCOL_00005550 Prasinoderma coloniale HOM05D003563 ORTHO05D005325 5.0e-17 91.7 90 50.0
Oeu010500.1 Olea europaea HOM05D003563 ORTHO05D005325 1.6e-15 86.7 98 49.0
COL.COLO4_26329 Corchorus olitorius HOM05D003563 ORTHO05D005325 4.0e-14 82.0 112 45.5
Haze_26983 Corylus avellana HOM05D003563 ORTHO05D005325 8.3e-12 74.3 73 45.2
HPP92_002698 Vanilla planifolia HOM05D003563 ORTHO05D005325 3.5e-10 68.9 37 78.4
Haze_26669 Corylus avellana HOM05D003563 ORTHO05D005325 1.0e-09 67.4 62 51.6
Cfa022173 Carpinus fangiana HOM05D003563 ORTHO05D005325 1.7e-09 66.6 71 43.7
MBI16_g36556_MAGBIO Magnolia biondii HOM05D003563 ORTHO05D005325 7.3e-08 61.2 124 36.3


User provided reference genes

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