Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR213770 Cardamine hirsuta HOM05D003681 ORTHO05D004703 0.0e+00 1419.4 743 100.0
AL7G49000 Arabidopsis lyrata HOM05D003681 ORTHO05D004703 0.0e+00 1359.0 743 96.0
AT5G40740 Arabidopsis thaliana HOM05D003681 ORTHO05D004703 0.0e+00 1357.4 743 96.0
Carub.0007s3474 Capsella rubella HOM05D003681 ORTHO05D004703 0.0e+00 1347.8 744 95.7
Thhalv10027657m.g Eutrema salsugineum HOM05D003681 ORTHO05D004703 0.0e+00 1321.6 744 93.5
Sp7g01150 Schrenkiella parvula HOM05D003681 ORTHO05D004703 0.0e+00 1320.8 744 93.5
Aa31LG9G900 Aethionema arabicum HOM05D003681 ORTHO05D004703 0.0e+00 1303.9 748 91.6
BolC6t37131H Brassica oleracea HOM05D003681 ORTHO05D004703 0.0e+00 1303.9 743 92.2
BraA07t29742Z Brassica rapa HOM05D003681 ORTHO05D004703 0.0e+00 1303.5 743 92.2
C04p47540 Brassica napus HOM05D003681 ORTHO05D004703 0.0e+00 1298.1 744 92.6
A04p13760 Brassica napus HOM05D003681 ORTHO05D004703 0.0e+00 1296.6 746 92.6
BraA04t17035Z Brassica rapa HOM05D003681 ORTHO05D004703 0.0e+00 1295.4 744 92.5
BolC4t26356H Brassica oleracea HOM05D003681 ORTHO05D004703 0.0e+00 1291.6 744 91.8
BcaB02g07929 Brassica carinata HOM05D003681 ORTHO05D004703 0.0e+00 1290.0 743 91.5
A07p20510 Brassica napus HOM05D003681 ORTHO05D004703 0.0e+00 1289.6 743 91.5
C06p19360 Brassica napus HOM05D003681 ORTHO05D004703 0.0e+00 1286.2 743 91.3
BcaC08g44481 Brassica carinata HOM05D003681 ORTHO05D004703 0.0e+00 1285.8 743 91.3
BcaB06g27549 Brassica carinata HOM05D003681 ORTHO05D004703 0.0e+00 1241.9 744 89.4
THA.LOC104805345 Tarenaya hassleriana HOM05D003681 ORTHO05D004703 0.0e+00 1177.2 753 83.9
Cpa.g.sc130.41 Carica papaya HOM05D003681 ORTHO05D004703 0.0e+00 1077.4 749 77.2
QL02p072923 Quercus lobata HOM05D003681 ORTHO05D004703 2.7e-303 1045.0 750 74.5
Atru.chr6.2486 Acer truncatum HOM05D003681 ORTHO05D004703 2.1e-300 1035.4 750 75.1
Ciclev10014307m.g Citrus clementina HOM05D003681 ORTHO05D004703 2.0e-298 1028.9 739 75.0
Thecc.04G027500 Theobroma cacao HOM05D003681 ORTHO05D004703 4.6e-295 1017.7 748 73.3
TWI12G0555 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 1.0e-294 1016.5 749 72.6
CiPaw.04G033000 Carya illinoinensis HOM05D003681 ORTHO05D004703 1.5e-293 1012.7 749 73.4
Manes.17G107300 Manihot esculenta HOM05D003681 ORTHO05D004703 4.3e-293 1011.1 749 72.2
CANSAT64G2654 Cannabis sativa HOM05D003681 ORTHO05D004703 5.2e-291 1004.2 753 71.8
Duzib187G0106 Durio zibethinus HOM05D003681 ORTHO05D004703 2.0e-290 1002.3 747 71.5
TWI36G0744 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 1.7e-289 999.2 749 71.3
Dinv33384 Davidia involucrata HOM05D003681 ORTHO05D004703 3.7e-289 998.0 750 71.9
MD09G1017400 Malus domestica HOM05D003681 ORTHO05D004703 4.9e-289 997.7 749 72.2
CiPaw.03G050400 Carya illinoinensis HOM05D003681 ORTHO05D004703 6.4e-289 997.3 749 71.3
Gohir.D09G033600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 1.1e-288 996.5 766 71.5
Gorai.006G038600 Gossypium raimondii HOM05D003681 ORTHO05D004703 1.1e-288 996.5 766 71.5
Eucgr.I01693 Eucalyptus grandis HOM05D003681 ORTHO05D004703 1.4e-288 996.1 748 71.8
GSVIVG01001851001 Vitis vinifera HOM05D003681 ORTHO05D004703 2.4e-288 995.3 749 70.6
Prupe.3G299500 Prunus persica HOM05D003681 ORTHO05D004703 5.4e-288 994.2 748 71.5
Potri.001G337700 Populus trichocarpa HOM05D003681 ORTHO05D004703 9.2e-288 993.4 747 73.0
Manes.15G156300 Manihot esculenta HOM05D003681 ORTHO05D004703 1.6e-287 992.6 748 71.7
Gohir.A11G065000 Gossypium hirsutum HOM05D003681 ORTHO05D004703 4.6e-287 991.1 748 71.8
Actinidia18423 Actinidia chinensis HOM05D003681 ORTHO05D004703 3.0e-286 988.4 748 71.3
MD17G1018200 Malus domestica HOM05D003681 ORTHO05D004703 3.9e-286 988.0 748 71.9
PGR142G3554 Punica granatum HOM05D003681 ORTHO05D004703 1.1e-285 986.5 750 70.7
Gohir.A09G033400 Gossypium hirsutum HOM05D003681 ORTHO05D004703 4.3e-285 984.6 766 70.8
CSS0025950 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 5.6e-285 984.2 749 71.0
Potri.001G337600 Populus trichocarpa HOM05D003681 ORTHO05D004703 1.2e-284 983.0 747 72.7
Dinv25694 Davidia involucrata HOM05D003681 ORTHO05D004703 2.0e-282 975.7 750 70.0
Haze_14813 Corylus avellana HOM05D003681 ORTHO05D004703 3.4e-282 974.9 760 70.8
Cfa007279 Carpinus fangiana HOM05D003681 ORTHO05D004703 2.9e-281 971.8 719 73.2
Phvul.004G057300 Phaseolus vulgaris HOM05D003681 ORTHO05D004703 2.9e-281 971.8 753 70.9
COL.COLO4_29274 Corchorus olitorius HOM05D003681 ORTHO05D004703 8.4e-281 970.3 739 70.6
Gohir.D11G069300 Gossypium hirsutum HOM05D003681 ORTHO05D004703 1.9e-280 969.1 748 70.6
VMungo0464G1197 Vigna mungo HOM05D003681 ORTHO05D004703 7.1e-280 967.2 748 70.9
CsaV3_3G027310 Cucumis sativus L. HOM05D003681 ORTHO05D004703 9.2e-280 966.8 754 71.1
Gorai.007G074100 Gossypium raimondii HOM05D003681 ORTHO05D004703 9.2e-280 966.8 748 70.6
Glyma.05G073400 Glycine max HOM05D003681 ORTHO05D004703 6.0e-279 964.1 750 70.7
Gohir.D10G085200 Gossypium hirsutum HOM05D003681 ORTHO05D004703 7.8e-279 963.8 748 69.7
Glyma.19G077600 Glycine max HOM05D003681 ORTHO05D004703 1.0e-278 963.4 750 70.8
RcHm_v2.0_Chr2g0174171 Rosa chinensis HOM05D003681 ORTHO05D004703 2.3e-278 962.2 749 70.9
Actinidia16950 Actinidia chinensis HOM05D003681 ORTHO05D004703 3.9e-278 961.4 748 69.8
Gorai.011G093100 Gossypium raimondii HOM05D003681 ORTHO05D004703 6.6e-278 960.7 748 69.7
TAR374G1530 Trochodendron aralioides HOM05D003681 ORTHO05D004703 8.1e-276 953.7 748 68.6
ClCG05G013220 Citrullus lanatus HOM05D003681 ORTHO05D004703 1.1e-275 953.4 754 70.6
Sed0015235 Sechium edule HOM05D003681 ORTHO05D004703 1.4e-275 953.0 753 69.9
CSS0035050 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 1.5e-274 949.5 748 69.0
Sabra16G0218500 Salix brachista HOM05D003681 ORTHO05D004703 2.0e-274 949.1 749 70.1
Lj2g0006828 Lotus japonicus HOM05D003681 ORTHO05D004703 7.6e-274 947.2 751 70.2
Sc03g0006880 Simmondsia chinensis HOM05D003681 ORTHO05D004703 3.2e-272 941.8 747 68.5
Aqoxy3G01435 Aquilegia oxysepala HOM05D003681 ORTHO05D004703 7.1e-272 940.6 750 68.8
Sed0021158 Sechium edule HOM05D003681 ORTHO05D004703 1.2e-271 939.9 753 69.7
arahy.Tifrunner.gnm1.ann1.0QF2GW Arachis hypogaea HOM05D003681 ORTHO05D004703 1.6e-271 939.5 750 70.0
TAR622G1195 Trochodendron aralioides HOM05D003681 ORTHO05D004703 1.6e-271 939.5 750 67.2
FvH4_6g52640 Fragaria vesca HOM05D003681 ORTHO05D004703 7.8e-271 937.2 750 69.7
FAN14G5093 Fragaria x ananassa HOM05D003681 ORTHO05D004703 6.6e-270 934.1 768 68.6
PGSC0003DMG400020227 Solanum tuberosum HOM05D003681 ORTHO05D004703 1.3e-268 929.9 746 68.2
PGSC0003DMG400006971 Solanum tuberosum HOM05D003681 ORTHO05D004703 6.2e-268 927.5 747 67.5
Lalb_Chr02g0157941 Lupinus albus HOM05D003681 ORTHO05D004703 2.4e-267 925.6 746 68.2
Psat1g082400 Pisum sativum HOM05D003681 ORTHO05D004703 5.3e-267 924.5 751 69.1
CAN.G473.58 Capsicum annuum HOM05D003681 ORTHO05D004703 6.9e-267 924.1 748 67.6
Lj7A605G77 Lonicera japonica HOM05D003681 ORTHO05D004703 1.2e-266 923.3 740 68.9
FAN09G4630 Fragaria x ananassa HOM05D003681 ORTHO05D004703 2.6e-266 922.2 768 67.7
Sopen02g038450 Solanum pennellii HOM05D003681 ORTHO05D004703 2.6e-266 922.2 748 68.2
Sopen02g017120 Solanum pennellii HOM05D003681 ORTHO05D004703 9.9e-266 920.2 749 66.9
FAN02G4174 Fragaria x ananassa HOM05D003681 ORTHO05D004703 3.8e-265 918.3 750 68.8
Solyc02g093810.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 4.9e-265 917.9 748 67.9
vmacro05923 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 2.4e-264 915.6 737 68.7
Cc07_g00400 Coffea canephora HOM05D003681 ORTHO05D004703 3.2e-264 915.2 746 67.4
Nn4g22444 Nelumbo nucifera HOM05D003681 ORTHO05D004703 7.1e-264 914.1 752 66.9
FAN05G4404 Fragaria x ananassa HOM05D003681 ORTHO05D004703 3.5e-263 911.8 795 65.8
PSO017G2495 Papaver somniferum HOM05D003681 ORTHO05D004703 1.7e-262 909.4 759 66.0
CAN.G1057.25 Capsicum annuum HOM05D003681 ORTHO05D004703 6.6e-262 907.5 748 66.4
MSTRG.3111 Avicennia marina HOM05D003681 ORTHO05D004703 9.6e-261 903.7 749 68.1
Medtr6g022730 Medicago truncatula HOM05D003681 ORTHO05D004703 1.3e-260 903.3 750 68.4
Hma1.2p1_0279F.1_g112260 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 4.8e-260 901.4 792 63.8
CSS0007013 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 1.4e-259 899.8 702 68.5
Lalb_Chr21g0317601 Lupinus albus HOM05D003681 ORTHO05D004703 1.4e-259 899.8 746 66.9
Solyc02g067990.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 6.9e-259 897.5 732 66.5
Hund06716 Selenicereus undatus HOM05D003681 ORTHO05D004703 4.5e-258 894.8 734 66.1
vmacro18313 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 7.6e-258 894.0 749 65.7
Sabra16G0218400 Salix brachista HOM05D003681 ORTHO05D004703 1.7e-257 892.9 732 68.3
EL10Ac4g08610 Beta vulgaris HOM05D003681 ORTHO05D004703 3.8e-257 891.7 733 66.7
Peaxi162Scf00420g00351 Petunia axillaris HOM05D003681 ORTHO05D004703 4.9e-257 891.3 732 66.1
Migut.H00059 Erythranthe guttata HOM05D003681 ORTHO05D004703 1.1e-256 890.2 748 66.4
AUR62036017 Chenopodium quinoa HOM05D003681 ORTHO05D004703 1.9e-256 889.4 731 67.3
MBI11_g11079_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 7.1e-256 887.5 754 63.7
TAR371G0788 Trochodendron aralioides HOM05D003681 ORTHO05D004703 1.2e-255 886.7 748 65.2
Nitab4.5_0000040g0490 Nicotiana tabacum HOM05D003681 ORTHO05D004703 6.0e-255 884.4 751 65.2
Oeu050433.3 Olea europaea HOM05D003681 ORTHO05D004703 1.5e-253 879.8 757 65.4
HanXRQChr07g0199161 Helianthus annuus HOM05D003681 ORTHO05D004703 3.3e-253 878.6 748 66.3
PSO478G5006 Papaver somniferum HOM05D003681 ORTHO05D004703 3.3e-253 878.6 753 65.1
Actinidia36165 Actinidia chinensis HOM05D003681 ORTHO05D004703 2.8e-252 875.5 735 65.9
Rhsim10G0011100 Rhododendron simsii HOM05D003681 ORTHO05D004703 8.1e-252 874.0 741 66.0
Ca_04403_v3 Cicer arietinum L. HOM05D003681 ORTHO05D004703 1.4e-251 873.2 733 67.5
ECA238G4183 Erigeron canadensis HOM05D003681 ORTHO05D004703 6.9e-251 870.9 724 66.0
SalBow1G2960 Salvia bowleyana HOM05D003681 ORTHO05D004703 1.2e-250 870.2 732 66.1
SalBow1G7977 Salvia bowleyana HOM05D003681 ORTHO05D004703 1.2e-250 870.2 732 66.1
Nitab4.5_0008718g0020 Nicotiana tabacum HOM05D003681 ORTHO05D004703 1.0e-249 867.1 737 65.0
SGA_v2.0_scaffold18G08242 Striga asiatica HOM05D003681 ORTHO05D004703 1.3e-249 866.7 765 64.6
Rhsim08G0046300 Rhododendron simsii HOM05D003681 ORTHO05D004703 4.9e-249 864.8 753 63.7
Oeu058755.3 Olea europaea HOM05D003681 ORTHO05D004703 1.1e-243 847.0 790 61.6
Nitab4.5_0001863g0130 Nicotiana tabacum HOM05D003681 ORTHO05D004703 2.0e-242 842.8 732 63.7
AUR62035509 Chenopodium quinoa HOM05D003681 ORTHO05D004703 7.6e-242 840.9 717 65.7
Sc03g0007020 Simmondsia chinensis HOM05D003681 ORTHO05D004703 1.3e-241 840.1 745 63.2
Peaxi162Scf00080g01724 Petunia axillaris HOM05D003681 ORTHO05D004703 1.7e-241 839.7 732 63.7
Lj1g0019639 Lotus japonicus HOM05D003681 ORTHO05D004703 5.9e-234 814.7 756 62.0
TPR.G36528 Trifolium pratense HOM05D003681 ORTHO05D004703 7.9e-231 804.3 806 60.8
SGA_v2.0_scaffold135G34941 Striga asiatica HOM05D003681 ORTHO05D004703 3.0e-230 802.4 784 59.8
Lsat_1_v5_gn_2_93641 Lactuca sativa HOM05D003681 ORTHO05D004703 2.2e-228 796.2 756 61.9
Gohir.A10G160600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 2.8e-228 795.8 554 75.5
Os02g0329300 Oryza sativa ssp. japonica HOM05D003681 ORTHO05D004703 2.3e-222 776.2 760 59.6
CDE07G0234 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 2.2e-212 743.0 758 56.5
HPP92_006269 Vanilla planifolia HOM05D003681 ORTHO05D004703 1.2e-210 737.3 746 57.5
ATR0824G011 Amborella trichopoda HOM05D003681 ORTHO05D004703 8.5e-209 731.1 724 57.9
Zm00001eb235200 Zea mays HOM05D003681 ORTHO05D004703 2.1e-207 726.5 733 58.5
TAR374G1355 Trochodendron aralioides HOM05D003681 ORTHO05D004703 1.0e-193 681.0 440 79.1
unitig_21.g20482 Utricularia gibba HOM05D003681 ORTHO05D004703 1.3e-188 664.1 768 52.6
CDE04G2610 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 3.5e-186 656.0 730 53.2
unitig_744.g24365 Utricularia gibba HOM05D003681 ORTHO05D004703 3.7e-172 609.4 629 56.1
DCAR_011289 Daucus carota HOM05D003681 ORTHO05D004703 1.9e-163 580.5 580 59.0
QL07p006188 Quercus lobata HOM05D003681 ORTHO05D004703 1.3e-161 574.3 372 79.6
Mapoly0032s0042 Marchantia polymorpha HOM05D003681 ORTHO05D004703 1.0e-137 495.0 732 44.0
SHI03860 Sapria himalayana HOM05D003681 ORTHO05D004703 3.2e-131 473.4 439 60.8
SMO367G0854 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 1.3e-129 468.0 657 45.8
QL09p045970 Quercus lobata HOM05D003681 ORTHO05D004703 1.6e-127 461.1 303 78.2
Pp3c13_14720 Physcomitrium patens HOM05D003681 ORTHO05D004703 2.1e-122 444.1 758 41.8
Pp3c13_14730 Physcomitrium patens HOM05D003681 ORTHO05D004703 2.1e-122 444.1 758 41.8
Pp3c4_18170 Physcomitrium patens HOM05D003681 ORTHO05D004703 6.3e-119 432.6 777 40.2
MELO3C014854.2 Cucumis melo HOM05D003681 ORTHO05D004703 3.2e-115 420.2 450 56.4
Pp3c3_25790 Physcomitrium patens HOM05D003681 ORTHO05D004703 9.4e-115 418.7 518 47.5
SEGI_13919 Sequoiadendron giganteum HOM05D003681 ORTHO05D004703 3.5e-101 373.6 360 57.2
Actinidia35791 Actinidia chinensis HOM05D003681 ORTHO05D004703 3.0e-89 334.0 357 58.3
SGA_v2.0_scaffold135G34947 Striga asiatica HOM05D003681 ORTHO05D004703 5.2e-89 333.2 258 69.4
CBR_g66670 Chara braunii HOM05D003681 ORTHO05D004703 1.3e-87 328.6 580 39.0
RcHm_v2.0_Chr2g0109021 Rosa chinensis HOM05D002608 ORTHO05D004703 2.2e-87 327.8 282 63.1
Nn3g16565 Nelumbo nucifera HOM05D003681 ORTHO05D004703 2.3e-81 307.8 184 85.3
MBI06_g35146_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 9.2e-78 295.8 356 50.3
AagrBONN_evm.TU.Sc2ySwM_228.437 Anthoceros agrestis HOM05D003681 ORTHO05D004703 2.8e-66 257.7 418 40.7
SMO367G0212 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 6.4e-63 246.5 588 36.7
RcHm_v2.0_Chr5g0047251 Rosa chinensis HOM05D002608 ORTHO05D021346 4.4e-56 223.8 452 36.3
TAR629G3339 Trochodendron aralioides HOM05D003681 ORTHO05D030546 2.4e-49 201.4 640 28.9
SMO367G0417 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 3.4e-48 197.6 606 33.8
Lsat_1_v5_gn_3_79520 Lactuca sativa HOM05D003681 ORTHO05D004703 1.8e-41 175.3 192 54.7
RcHm_v2.0_Chr6g0248701 Rosa chinensis HOM05D002608 ORTHO05D013040 2.9e-39 167.9 110 74.5
SMO275G0043 Selaginella moellendorffii HOM05D003681 ORTHO05D030546 3.0e-36 157.9 131 64.9
BcaC05g26953 Brassica carinata HOM05D003681 ORTHO05D024003 4.5e-32 144.1 72 95.8
C05p28020 Brassica napus HOM05D003681 ORTHO05D024003 4.5e-32 144.1 72 95.8
DCAR_011288 Daucus carota HOM05D003681 ORTHO05D004703 7.6e-32 143.3 168 53.0
RcHm_v2.0_Chr5g0045391 Rosa chinensis HOM05D003681 ORTHO05D004703 5.4e-30 137.1 95 68.4
BolC5t31529H Brassica oleracea HOM05D003681 ORTHO05D024003 7.1e-30 136.7 72 94.4
RcHm_v2.0_Chr2g0096321 Rosa chinensis HOM05D003681 ORTHO05D004703 2.1e-29 135.2 95 67.4
RcHm_v2.0_Chr2g0166591 Rosa chinensis HOM05D003681 ORTHO05D004703 3.5e-29 134.4 76 89.5
SHI03859 Sapria himalayana HOM05D000105 ORTHO05D000023 6.9e-25 120.2 331 34.7
Hma1.2p1_0026F.1_g016370 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 2.4e-22 111.7 228 36.4
RcHm_v2.0_Chr6g0248711 Rosa chinensis HOM05D003681 ORTHO05D030546 9.6e-19 99.8 51 92.2
MBI02_g11376_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D024003 2.1e-18 98.6 60 73.3
SEGI_23209 Sequoiadendron giganteum HOM05D003681 ORTHO05D004703 2.8e-18 98.2 295 32.5
Lsat_1_v5_gn_2_93681 Lactuca sativa HOM05D006130 ORTHO05D007491 1.1e-17 96.3 50 92.0
vmacro18312 Vaccinium macrocarpon HOM05D004367 ORTHO05D004937 7.6e-16 90.1 221 33.5
SEGI_03694 Sequoiadendron giganteum HOM05D003681 ORTHO05D024003 6.5e-15 87.0 60 65.0
ECA247G3396 Erigeron canadensis HOM05D003681 ORTHO05D004703 9.3e-14 83.2 69 63.8
SMO275G0001 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 2.7e-13 81.6 84 56.0
SMO367G0834 Selaginella moellendorffii HOM05D003681 ORTHO05D030546 4.6e-13 80.9 85 52.9
VMungo1127G0394 Vigna mungo HOM05D003681 ORTHO05D004703 2.4e-09 68.6 88 47.7
VMungo0133G0001 Vigna mungo HOM05D003681 ORTHO05D433683 7.2e-06 57.0 87 44.8


User provided reference genes

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