Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR212780 Cardamine hirsuta HOM05D002129 ORTHO05D002188 2.4e-175 620.9 1406 100.0
Thhalv10027620m.g Eutrema salsugineum HOM05D002129 ORTHO05D002188 2.7e-86 325.1 480 66.0
AT5G41790 Arabidopsis thaliana HOM05D002129 ORTHO05D002188 1.2e-83 316.2 483 78.9
AL7G47470 Arabidopsis lyrata HOM05D002129 ORTHO05D002188 1.4e-79 302.8 1408 75.8
Carub.0007s3359 Capsella rubella HOM05D002129 ORTHO05D002188 4.3e-76 291.2 265 80.4
A07p20930 Brassica napus HOM05D002129 ORTHO05D002188 2.1e-75 288.9 483 71.2
C06p20190 Brassica napus HOM05D001971 ORTHO05D002188 6.4e-72 277.3 483 67.3
BolC6t37203H Brassica oleracea HOM05D002129 ORTHO05D002188 2.4e-71 275.4 483 67.3
BcaC08g44556 Brassica carinata HOM05D002129 ORTHO05D002188 1.6e-70 272.7 483 66.9
BraA04t17139Z Brassica rapa HOM05D002129 ORTHO05D002188 5.1e-69 267.7 1409 69.0
Sp7g00300 Schrenkiella parvula HOM05D002129 ORTHO05D002188 2.2e-64 252.3 188 85.1
BcaC02g08917 Brassica carinata HOM05D002129 ORTHO05D002188 3.1e-58 231.9 188 77.1
C04p49150 Brassica napus HOM05D002129 ORTHO05D002188 3.1e-58 231.9 188 77.1
BolC4t26499H Brassica oleracea HOM05D002129 ORTHO05D002188 3.1e-58 231.9 188 77.1
BcaB06g27672 Brassica carinata HOM05D002129 ORTHO05D002188 8.9e-58 230.3 188 80.3
Carub.0007s3367 Capsella rubella HOM05D002129 ORTHO05D021914 2.0e-57 229.2 188 80.3
Aa31LG9G340 Aethionema arabicum HOM05D002129 ORTHO05D002188 4.4e-57 228.0 483 62.5
A04p14960 Brassica napus HOM05D002129 ORTHO05D002188 5.4e-55 221.1 1470 73.7
C07p01920 Brassica napus HOM05D002129 ORTHO05D002188 6.9e-50 204.1 162 66.0
AL2G10610 Arabidopsis lyrata HOM05D002129 ORTHO05D002188 8.4e-48 197.2 187 70.6
Thhalv10023387m.g Eutrema salsugineum HOM05D002129 ORTHO05D002188 1.5e-44 186.4 188 67.6
Sp2g00430 Schrenkiella parvula HOM05D002129 ORTHO05D002188 1.6e-43 183.0 187 67.4
C08p22900 Brassica napus HOM05D002129 ORTHO05D016708 3.1e-42 178.7 206 69.9
BolC8t49926H Brassica oleracea HOM05D002129 ORTHO05D016708 3.1e-42 178.7 206 69.9
BcaB07g31455 Brassica carinata HOM05D002129 ORTHO05D002188 6.9e-42 177.6 188 67.0
Carub.0002s0048 Capsella rubella HOM05D002129 ORTHO05D002188 7.6e-41 174.1 164 71.3
BcaC04g22559 Brassica carinata HOM05D002129 ORTHO05D002188 4.9e-40 171.4 188 64.9
C09p17910 Brassica napus HOM05D002129 ORTHO05D002188 4.9e-40 171.4 188 64.9
BolC9t54688H Brassica oleracea HOM05D002129 ORTHO05D002188 4.9e-40 171.4 188 64.9
BcaC06g36642 Brassica carinata HOM05D002129 ORTHO05D002188 1.1e-39 170.2 136 64.7
BolC7t40600H Brassica oleracea HOM05D002129 ORTHO05D002188 1.1e-39 170.2 136 64.7
BcaC07g39281 Brassica carinata HOM05D002129 ORTHO05D016708 1.9e-39 169.5 206 51.5
A09p14790 Brassica napus HOM05D002129 ORTHO05D002188 3.2e-39 168.7 188 65.4
THA.LOC104809341 Tarenaya hassleriana HOM05D002129 ORTHO05D002188 1.3e-37 163.3 165 69.7
AT1G64330 Arabidopsis thaliana HOM05D002129 ORTHO05D002188 6.7e-37 161.0 160 71.2
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 6.9e-34 151.0 155 53.5
CARHR046630 Cardamine hirsuta HOM05D002129 ORTHO05D002188 1.2e-33 150.2 156 53.2
Gohir.A02G102200 Gossypium hirsutum HOM05D002129 ORTHO05D002188 3.8e-32 145.2 189 46.0
Gohir.D03G081900 Gossypium hirsutum HOM05D002129 ORTHO05D002188 8.4e-32 144.1 190 46.3
Gorai.003G081700 Gossypium raimondii HOM05D002129 ORTHO05D002188 1.4e-31 143.3 189 46.6
Manes.01G045900 Manihot esculenta HOM05D002129 ORTHO05D002188 4.2e-31 141.7 195 50.3
Potri.001G094200 Populus trichocarpa HOM05D002129 ORTHO05D002188 9.3e-31 140.6 195 48.2
COL.COLO4_21718 Corchorus olitorius HOM05D002129 ORTHO05D002188 1.2e-30 140.2 195 46.7
Gorai.006G207900 Gossypium raimondii HOM05D002129 ORTHO05D002188 6.0e-30 137.9 192 45.8
Eucgr.E00844 Eucalyptus grandis HOM05D002129 ORTHO05D002188 1.3e-29 136.7 196 44.9
Gohir.A09G190800 Gossypium hirsutum HOM05D002129 ORTHO05D002188 1.8e-29 136.3 194 45.9
Ciclev10018618m.g Citrus clementina HOM05D002129 ORTHO05D002188 2.3e-29 136.0 191 48.2
Duzib205G0555 Durio zibethinus HOM05D002129 ORTHO05D002188 3.0e-29 135.6 195 45.1
Gohir.D09G185400 Gossypium hirsutum HOM05D002129 ORTHO05D002188 3.0e-29 135.6 194 44.8
Thecc.03G293200 Theobroma cacao HOM05D002129 ORTHO05D002188 3.9e-29 135.2 195 45.6
arahy.Tifrunner.gnm1.ann1.DN0YA4 Arachis hypogaea HOM05D002129 ORTHO05D002188 1.9e-28 132.9 194 44.8
Sabra01G0070100 Salix brachista HOM05D002129 ORTHO05D002188 1.3e-27 130.2 186 46.2
arahy.Tifrunner.gnm1.ann1.Q3GPI2 Arachis hypogaea HOM05D002129 ORTHO05D002188 1.6e-27 129.8 194 43.8
Duzib084G0477 Durio zibethinus HOM05D002129 ORTHO05D002188 8.2e-27 127.5 182 44.5
Manes.10G064266 Manihot esculenta HOM05D002129 ORTHO05D002188 4.1e-26 125.2 195 47.2
MD14G1121500 Malus domestica HOM05D002129 ORTHO05D002188 1.2e-25 123.6 195 45.1
Duzib068G1418 Durio zibethinus HOM05D002129 ORTHO05D002188 3.4e-25 122.1 195 42.1
Sabra03G0098900 Salix brachista HOM05D002129 ORTHO05D002188 1.3e-24 120.2 197 39.1
FAN08G2643 Fragaria x ananassa HOM05D002129 ORTHO05D002188 1.7e-24 119.8 182 46.7
RcHm_v2.0_Chr7g0195431 Rosa chinensis HOM05D002129 ORTHO05D002188 1.7e-24 119.8 179 46.4
Potri.003G137400 Populus trichocarpa HOM05D002129 ORTHO05D002188 2.2e-24 119.4 190 44.2
Cc08_g15780 Coffea canephora HOM05D002129 ORTHO05D002188 5.0e-24 118.2 188 42.0
FAN13G0971 Fragaria x ananassa HOM05D002129 ORTHO05D002188 5.0e-24 118.2 182 46.2
Actinidia27335 Actinidia chinensis HOM05D002129 ORTHO05D002188 6.5e-24 117.9 190 44.7
Oeu009945.1 Olea europaea HOM05D002129 ORTHO05D002188 8.4e-24 117.5 190 46.3
FAN18G3989 Fragaria x ananassa HOM05D002129 ORTHO05D002188 1.9e-23 116.3 181 46.4
TWI60G1278 Tripterygium wilfordii HOM05D002129 ORTHO05D002188 2.5e-23 115.9 193 41.5
Manes.02G012600 Manihot esculenta HOM05D002129 ORTHO05D002188 3.2e-23 115.5 169 46.2
FvH4_5g04072 Fragaria vesca HOM05D002129 ORTHO05D002188 7.2e-23 114.4 181 45.9
Haze_08667 Corylus avellana HOM05D002129 ORTHO05D002188 1.2e-22 113.6 158 43.7
Ca_17495_v3 Cicer arietinum L. HOM05D002129 ORTHO05D002188 1.6e-22 113.2 193 42.0
Cpa.g.sc79.65 Carica papaya HOM05D002129 ORTHO05D002188 2.7e-22 112.5 183 45.9
TPR.G3412 Trifolium pratense HOM05D002129 ORTHO05D002188 3.5e-22 112.1 190 41.6
CSS0045654 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 4.6e-22 111.7 150 41.3
Lj4g0008940 Lotus japonicus HOM05D002129 ORTHO05D002188 4.6e-22 111.7 182 44.0
Cfa012842 Carpinus fangiana HOM05D002129 ORTHO05D002188 6.1e-22 111.3 163 41.7
QL02p031434 Quercus lobata HOM05D002129 ORTHO05D002188 1.3e-21 110.2 160 44.4
TAR374G0929 Trochodendron aralioides HOM05D002129 ORTHO05D002188 1.8e-21 109.8 196 37.8
Dinv37550 Davidia involucrata HOM05D002129 ORTHO05D002188 2.3e-21 109.4 168 44.6
Glyma.08G021400 Glycine max HOM05D002129 ORTHO05D002188 3.0e-21 109.0 189 43.9
Oeu042387.1 Olea europaea HOM05D002129 ORTHO05D002188 6.7e-21 107.8 173 48.0
Sopen08g030310 Solanum pennellii HOM05D002129 ORTHO05D002188 1.5e-20 106.7 192 40.6
FAN18G4528 Fragaria x ananassa HOM05D002129 ORTHO05D002188 1.9e-20 106.3 175 45.1
Nitab4.5_0004161g0030 Nicotiana tabacum HOM05D002129 ORTHO05D002188 1.9e-20 106.3 186 43.5
Solyc08g082010.3 Solanum lycopersicum HOM05D002129 ORTHO05D002188 1.9e-20 106.3 190 40.5
MD06G1102300 Malus domestica HOM05D002129 ORTHO05D002188 4.3e-20 105.1 181 43.1
Glyma.05G215100 Glycine max HOM05D002129 ORTHO05D002188 5.7e-20 104.8 195 41.5
Lalb_Chr05g0224241 Lupinus albus HOM05D002129 ORTHO05D002188 7.4e-20 104.4 178 38.2
vmacro13912 Vaccinium macrocarpon HOM05D002129 ORTHO05D002188 7.4e-20 104.4 158 36.7
Phvul.002G296300 Phaseolus vulgaris HOM05D002129 ORTHO05D002188 9.7e-20 104.0 189 41.8
Rhsim07G0084000 Rhododendron simsii HOM05D002129 ORTHO05D002188 9.7e-20 104.0 158 38.0
CANSAT21G2383 Cannabis sativa HOM05D002129 ORTHO05D002188 1.6e-19 103.2 161 44.7
Nitab4.5_0000223g0210 Nicotiana tabacum HOM05D002129 ORTHO05D002188 2.2e-19 102.8 186 41.4
Medtr8g099275 Medicago truncatula HOM05D002129 ORTHO05D002188 2.4e-18 99.4 195 36.9
SGA_v2.0_scaffold111G31429 Striga asiatica HOM05D002129 ORTHO05D002188 2.4e-18 99.4 181 43.1
A07p20920 Brassica napus HOM05D002129 ORTHO05D002188 4.1e-18 98.6 145 59.3
CiPaw.12G085000 Carya illinoinensis HOM05D002129 ORTHO05D002188 5.3e-18 98.2 154 42.9
FAN04G1700 Fragaria x ananassa HOM05D002129 ORTHO05D002188 5.3e-18 98.2 187 40.1
FAN04G3154 Fragaria x ananassa HOM05D002129 ORTHO05D002188 5.3e-18 98.2 187 40.1
Dinv38857 Davidia involucrata HOM05D002129 ORTHO05D002188 6.9e-18 97.8 185 33.0
Lalb_Chr16g0390551 Lupinus albus HOM05D002129 ORTHO05D002188 6.9e-18 97.8 192 33.9
EL10Ac5g12884 Beta vulgaris HOM05D002129 ORTHO05D002188 9.0e-18 97.4 184 46.7
CiPaw.11G123900 Carya illinoinensis HOM05D002129 ORTHO05D002188 1.2e-17 97.1 155 37.4
MSTRG.25657 Avicennia marina HOM05D002129 ORTHO05D002188 3.4e-17 95.5 181 43.6
AUR62019808 Chenopodium quinoa HOM05D002129 ORTHO05D002188 5.9e-17 94.7 160 37.5
Dinv37551 Davidia involucrata HOM05D002129 ORTHO05D002188 7.7e-17 94.4 153 34.6
Atru.chr9.2042 Acer truncatum HOM05D002129 ORTHO05D002188 1.0e-16 94.0 162 41.4
Lsat_1_v5_gn_6_12040 Lactuca sativa HOM05D002129 ORTHO05D002188 1.0e-16 94.0 181 42.5
CAN.G532.94 Capsicum annuum HOM05D002129 ORTHO05D002188 1.3e-16 93.6 161 44.7
DCAR_005027 Daucus carota HOM05D002129 ORTHO05D002188 2.2e-16 92.8 185 35.1
Duzib084G0891 Durio zibethinus HOM05D002129 ORTHO05D002188 2.2e-16 92.8 199 36.7
VMungo0251G1428 Vigna mungo HOM05D002129 ORTHO05D002188 2.9e-16 92.4 191 34.6
AUR62010809 Chenopodium quinoa HOM05D002129 ORTHO05D002188 3.8e-16 92.0 159 35.8
Psat7g027680 Pisum sativum HOM05D002129 ORTHO05D002188 6.5e-16 91.3 189 41.3
ECA240G2507 Erigeron canadensis HOM05D002129 ORTHO05D002188 8.5e-16 90.9 181 43.1
PGSC0003DMG400012303 Solanum tuberosum HOM05D002129 ORTHO05D002188 8.5e-16 90.9 153 44.4
SalBow8G2059 Salvia bowleyana HOM05D002129 ORTHO05D002188 2.5e-15 89.4 185 45.4
ECA233G6022 Erigeron canadensis HOM05D002129 ORTHO05D002188 3.2e-15 89.0 181 39.2
SGA_v2.0_scaffold144G35850 Striga asiatica HOM05D002129 ORTHO05D002188 3.2e-15 89.0 185 42.7
Actinidia01396 Actinidia chinensis HOM05D002129 ORTHO05D002188 4.2e-15 88.6 184 35.3
Prupe.5G115300 Prunus persica HOM05D002129 ORTHO05D002188 7.2e-15 87.8 183 34.4
ClCG07G014890 Citrullus lanatus HOM05D002129 ORTHO05D002188 9.4e-15 87.4 199 40.2
Lalb_Chr09g0332631 Lupinus albus HOM05D002129 ORTHO05D002188 6.1e-14 84.7 191 36.1
Lsat_1_v5_gn_6_85821 Lactuca sativa HOM05D002129 ORTHO05D002188 6.7e-13 81.3 179 40.2
CSS0018198 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 8.8e-13 80.9 186 29.6
CSS0027740 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 8.8e-13 80.9 186 30.1
CsaV3_4G006420 Cucumis sativus L. HOM05D002129 ORTHO05D002188 1.1e-12 80.5 199 37.2
Migut.E01236 Erythranthe guttata HOM05D002129 ORTHO05D002188 1.1e-12 80.5 162 41.4
MELO3C016308.2 Cucumis melo HOM05D002129 ORTHO05D002188 2.5e-12 79.3 199 36.7
HanXRQChr03g0085141 Helianthus annuus HOM05D002129 ORTHO05D002188 4.3e-12 78.6 187 38.5
arahy.Tifrunner.gnm1.ann1.F3VNHJ Arachis hypogaea HOM05D002129 ORTHO05D002188 7.4e-12 77.8 124 34.7
GSVIVG01019499001 Vitis vinifera HOM05D002129 ORTHO05D002188 9.7e-12 77.4 128 38.3
Gohir.D04G079828 Gossypium hirsutum HOM05D002129 ORTHO05D002188 1.3e-11 77.0 173 33.5
Aqoxy5G04152 Aquilegia oxysepala HOM05D002129 ORTHO05D002188 2.2e-11 76.3 190 40.0
Migut.N02095 Erythranthe guttata HOM05D002129 ORTHO05D002188 2.8e-11 75.9 195 31.8
Prupe.5G115200 Prunus persica HOM05D002129 ORTHO05D002188 8.2e-11 74.3 185 30.3
TAR374G1003 Trochodendron aralioides HOM05D002129 ORTHO05D002188 8.2e-11 74.3 181 32.6
Rhsim02G0241100 Rhododendron simsii HOM05D002129 ORTHO05D002188 1.1e-10 73.9 170 31.8
arahy.Tifrunner.gnm1.ann1.P7UIV5 Arachis hypogaea HOM05D002129 ORTHO05D002188 1.8e-10 73.2 124 32.3
Peaxi162Scf00074g01134 Petunia axillaris HOM05D002129 ORTHO05D002188 2.4e-10 72.8 181 38.1
vmacro11445 Vaccinium macrocarpon HOM05D001971 ORTHO05D003057 4.1e-10 72.0 147 32.7
PGR042G1587 Punica granatum HOM05D002129 ORTHO05D002188 5.3e-10 71.6 195 35.9
Actinidia04211 Actinidia chinensis HOM05D002129 ORTHO05D002188 6.9e-10 71.2 147 31.3
Sed0022097 Sechium edule HOM05D002129 ORTHO05D002188 2.0e-09 69.7 195 35.4
Oeu061086.1 Olea europaea HOM05D002129 ORTHO05D002188 2.6e-09 69.3 181 30.4
MSTRG.11936 Avicennia marina HOM05D002129 ORTHO05D002188 4.5e-09 68.6 168 40.5
CSS0047098 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 4.5e-09 68.6 145 32.4
A07p07550 Brassica napus HOM05D002129 ORTHO05D002188 5.9e-09 68.2 46 78.3
CSS0006894 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 5.9e-09 68.2 145 32.4
MD06G1102200 Malus domestica HOM05D002129 ORTHO05D002188 5.9e-09 68.2 185 32.4
QL12p009828 Quercus lobata HOM05D002129 ORTHO05D002188 5.9e-09 68.2 171 29.2
QL12p010595 Quercus lobata HOM05D002129 ORTHO05D002188 5.9e-09 68.2 171 29.2
Cpa.g.sc122.43 Carica papaya HOM05D002129 ORTHO05D002188 7.7e-09 67.8 187 35.8
SGA_v2.0_scaffold173G39089 Striga asiatica HOM05D002129 ORTHO05D002188 7.7e-09 67.8 137 36.5
Gohir.A05G349350 Gossypium hirsutum HOM05D002129 ORTHO05D002188 1.0e-08 67.4 169 31.4
HanXRQChr02g0048241 Helianthus annuus HOM05D002129 ORTHO05D002188 1.0e-08 67.4 164 38.4
SalBow1G3214 Salvia bowleyana HOM05D002129 ORTHO05D002188 1.0e-08 67.4 179 36.3
Ah.12g052310 Amaranthus hybridus HOM05D002129 ORTHO05D002188 1.7e-08 66.6 154 39.6
MSTRG.1816 Avicennia marina HOM05D002129 ORTHO05D002188 1.7e-08 66.6 180 29.4
Thecc.03G293100 Theobroma cacao HOM05D002129 ORTHO05D002188 2.9e-08 65.9 175 29.7
Ca_17494_v3 Cicer arietinum L. HOM05D002129 ORTHO05D002188 3.8e-08 65.5 155 31.6
Manes.01G046000 Manihot esculenta HOM05D002129 ORTHO05D002188 3.8e-08 65.5 181 32.0
Sc07g0009960 Simmondsia chinensis HOM05D002129 ORTHO05D002188 5.0e-08 65.1 177 31.6
Gohir.A09G007350 Gossypium hirsutum HOM05D002129 ORTHO05D002188 6.5e-08 64.7 47 61.7
CSS0015477 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 1.1e-07 63.9 186 28.0
Gorai.008G186100 Gossypium raimondii HOM05D002129 ORTHO05D002188 1.1e-07 63.9 47 61.7
Hund11405 Selenicereus undatus HOM05D002129 ORTHO05D002188 1.9e-07 63.2 163 38.0
ECA246G1519 Erigeron canadensis HOM05D002129 ORTHO05D002188 2.5e-07 62.8 102 43.1
Ah.07g197190 Amaranthus hybridus HOM05D002129 ORTHO05D002188 3.2e-07 62.4 166 29.5
TWI15G0725 Tripterygium wilfordii HOM05D002129 ORTHO05D002188 3.2e-07 62.4 155 34.8
Migut.A00678 Erythranthe guttata HOM05D002129 ORTHO05D002188 4.2e-07 62.0 190 30.0
MD14G1121400 Malus domestica HOM05D002129 ORTHO05D002188 5.5e-07 61.6 185 31.4
SGA_v2.0_scaffold96G28980 Striga asiatica HOM05D002129 ORTHO05D002188 7.2e-07 61.2 164 32.9
unitig_748.g7418 Utricularia gibba HOM05D002129 ORTHO05D002188 9.4e-07 60.8 137 33.6
Migut.A00679 Erythranthe guttata HOM05D002129 ORTHO05D002188 1.2e-06 60.5 136 35.3
QL02p031447 Quercus lobata HOM05D002129 ORTHO05D002188 1.6e-06 60.1 164 26.8
unitig_62.g23616 Utricularia gibba HOM05D002129 ORTHO05D002188 1.6e-06 60.1 183 34.4
BcaB02g10228 Brassica carinata HOM05D002129 ORTHO05D016708 2.7e-06 59.3 44 75.0
BcaC02g11041 Brassica carinata HOM05D002129 ORTHO05D016708 2.7e-06 59.3 44 75.0
Lj8P210T83 Lonicera japonica HOM05D002129 ORTHO05D002188 4.7e-06 58.5 158 33.5
Nitab4.5_0006656g0010 Nicotiana tabacum HOM05D002129 ORTHO05D002188 4.7e-06 58.5 155 30.3
Peaxi162Scf00102g00176 Petunia axillaris HOM05D002129 ORTHO05D002188 4.7e-06 58.5 173 34.1
Migut.E01235 Erythranthe guttata HOM05D002129 ORTHO05D002188 6.1e-06 58.2 150 33.3
Nitab4.5_0002944g0210 Nicotiana tabacum HOM05D002129 ORTHO05D002188 6.1e-06 58.2 155 30.3


User provided reference genes

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