Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR211710 Cardamine hirsuta HOM05D003484 ORTHO05D004152 4.0e-27 124.0 62 100.0
CARHR068810 Cardamine hirsuta HOM05D003484 ORTHO05D004152 6.2e-12 73.6 46 82.6
Carub.0002s2229 Capsella rubella HOM05D003484 ORTHO05D004152 8.1e-12 73.2 46 84.8
Thhalv10018489m.g Eutrema salsugineum HOM05D003484 ORTHO05D004152 2.3e-11 71.6 47 80.9
AL2G35370 Arabidopsis lyrata HOM05D003484 ORTHO05D004152 6.8e-11 70.1 45 84.4
A06p15830 Brassica napus HOM05D003484 ORTHO05D004152 1.2e-10 69.3 47 76.6
BolC5t30522H Brassica oleracea HOM05D003484 ORTHO05D004152 1.2e-10 69.3 47 76.6
BraA06t24693Z Brassica rapa HOM05D003484 ORTHO05D004152 1.2e-10 69.3 47 76.6
C05p18150 Brassica napus HOM05D003484 ORTHO05D004152 3.4e-10 67.8 47 74.5
AT1G75420 Arabidopsis thaliana HOM05D003484 ORTHO05D004152 4.4e-10 67.4 46 80.4
Phvul.009G060600 Phaseolus vulgaris HOM05D003484 ORTHO05D004152 4.4e-10 67.4 47 78.7
AL1G32430 Arabidopsis lyrata HOM05D003484 ORTHO05D004152 5.8e-10 67.0 47 72.3
Sp5g30560 Schrenkiella parvula HOM05D003484 ORTHO05D004152 5.8e-10 67.0 46 78.3
AT1G19710 Arabidopsis thaliana HOM05D003484 ORTHO05D004152 7.5e-10 66.6 47 72.3
BcaB07g31984 Brassica carinata HOM05D003484 ORTHO05D004152 7.5e-10 66.6 47 72.3
Glyma.06G029300 Glycine max HOM05D003484 ORTHO05D004152 1.3e-09 65.9 47 76.6
THA.LOC104813813 Tarenaya hassleriana HOM05D003484 ORTHO05D004152 1.3e-09 65.9 47 74.5
Ciclev10001031m.g Citrus clementina HOM05D003484 ORTHO05D004152 1.7e-09 65.5 47 76.6
VMungo1309G0336 Vigna mungo HOM05D003484 ORTHO05D004152 1.7e-09 65.5 47 76.6
Glyma.17G253700 Glycine max HOM05D003484 ORTHO05D004152 2.2e-09 65.1 47 74.5
CSS0040658 Camellia sinensis var. sinensis HOM05D003484 ORTHO05D004152 3.7e-09 64.3 59 62.7
CARHR020230 Cardamine hirsuta HOM05D003484 ORTHO05D004152 3.7e-09 64.3 47 70.2
Glyma.04G029333 Glycine max HOM05D003484 ORTHO05D004152 3.7e-09 64.3 47 74.5
Potri.005G118800 Populus trichocarpa HOM05D003484 ORTHO05D004152 3.7e-09 64.3 47 74.5
Atru.chr13.405 Acer truncatum HOM05D003484 ORTHO05D004152 4.9e-09 63.9 59 62.7
CANSAT01G1008 Cannabis sativa HOM05D003484 ORTHO05D004152 4.9e-09 63.9 47 74.5
Carub.0001s1925 Capsella rubella HOM05D003484 ORTHO05D004152 4.9e-09 63.9 47 68.1
CiPaw.08G060800 Carya illinoinensis HOM05D003484 ORTHO05D004152 4.9e-09 63.9 47 74.5
AUR62014479 Chenopodium quinoa HOM05D003484 ORTHO05D004152 4.9e-09 63.9 47 74.5
AUR62034522 Chenopodium quinoa HOM05D003484 ORTHO05D004152 4.9e-09 63.9 47 74.5
Thhalv10007509m.g Eutrema salsugineum HOM05D003484 ORTHO05D004152 4.9e-09 63.9 47 70.2
Sabra02G0025100 Salix brachista HOM05D003484 ORTHO05D004152 4.9e-09 63.9 47 74.5
Aqoxy6G01198 Aquilegia oxysepala HOM05D003484 ORTHO05D004152 6.4e-09 63.5 47 74.5
DCAR_017312 Daucus carota HOM05D003484 ORTHO05D004152 6.4e-09 63.5 47 74.5
Rhsim08G0122700 Rhododendron simsii HOM05D003484 ORTHO05D004152 6.4e-09 63.5 55 58.2
Hund26891 Selenicereus undatus HOM05D003484 ORTHO05D004152 6.4e-09 63.5 47 72.3
Hund30416 Selenicereus undatus HOM05D003484 ORTHO05D004152 6.4e-09 63.5 47 72.3
Lj5g0005857 Lotus japonicus HOM05D003484 ORTHO05D004152 8.3e-09 63.2 47 72.3
QL02p009668 Quercus lobata HOM05D003484 ORTHO05D004152 8.3e-09 63.2 47 74.5
Aa31LG7G4290 Aethionema arabicum HOM05D003484 ORTHO05D004152 1.1e-08 62.8 47 70.2
EL10Ac1g00611 Beta vulgaris HOM05D003484 ORTHO05D004152 1.1e-08 62.8 47 72.3
MELO3C023411.2 Cucumis melo HOM05D003484 ORTHO05D004152 1.1e-08 62.8 47 72.3
Sc26g0003390 Simmondsia chinensis HOM05D003484 ORTHO05D004152 1.1e-08 62.8 47 70.2
Cfa013879 Carpinus fangiana HOM05D003484 ORTHO05D004152 1.4e-08 62.4 47 72.3
FvH4_1g12520 Fragaria vesca HOM05D003484 ORTHO05D004152 1.4e-08 62.4 47 72.3
FAN19G1806 Fragaria x ananassa HOM05D003484 ORTHO05D004152 1.4e-08 62.4 47 72.3
FAN26G2451 Fragaria x ananassa HOM05D003484 ORTHO05D004152 1.4e-08 62.4 47 72.3
RcHm_v2.0_Chr2g0100451 Rosa chinensis HOM05D003484 ORTHO05D004152 1.4e-08 62.4 47 72.3
Sabra05G0097900 Salix brachista HOM05D003484 ORTHO05D004152 1.4e-08 62.4 46 73.9
Thecc.01G027500 Theobroma cacao HOM05D003484 ORTHO05D004152 1.4e-08 62.4 47 72.3
Actinidia26094 Actinidia chinensis HOM05D003484 ORTHO05D004152 1.9e-08 62.0 59 61.0
Actinidia29806 Actinidia chinensis HOM05D003484 ORTHO05D004152 1.9e-08 62.0 47 72.3
CSS0005468 Camellia sinensis var. sinensis HOM05D003484 ORTHO05D004152 1.9e-08 62.0 59 61.0
ClCG09G002810 Citrullus lanatus HOM05D003484 ORTHO05D004152 1.9e-08 62.0 47 72.3
Gohir.A05G190400 Gossypium hirsutum HOM05D003484 ORTHO05D004152 1.9e-08 62.0 47 72.3
Prupe.7G161700 Prunus persica HOM05D003484 ORTHO05D004152 1.9e-08 62.0 47 70.2
SalBow1G0941 Salvia bowleyana HOM05D003484 ORTHO05D004152 1.9e-08 62.0 47 68.1
arahy.Tifrunner.gnm1.ann1.2B58VD Arachis hypogaea HOM05D003484 ORTHO05D004152 2.4e-08 61.6 47 70.2
arahy.Tifrunner.gnm1.ann1.66HKGP Arachis hypogaea HOM05D003484 ORTHO05D004152 2.4e-08 61.6 47 70.2
CAN.G358.31 Capsicum annuum HOM05D003484 ORTHO05D004152 2.4e-08 61.6 47 70.2
COL.COLO4_22006 Corchorus olitorius HOM05D003484 ORTHO05D004152 2.4e-08 61.6 47 70.2
Duzib093G1138 Durio zibethinus HOM05D003484 ORTHO05D004152 2.4e-08 61.6 47 70.2
Lalb_Chr11g0062181 Lupinus albus HOM05D003484 ORTHO05D004152 2.4e-08 61.6 47 70.2
QL06p035065 Quercus lobata HOM05D003484 ORTHO05D004152 2.4e-08 61.6 47 70.2
Rhsim08G0122800 Rhododendron simsii HOM05D003484 ORTHO05D004152 2.4e-08 61.6 59 61.0
vmacro17718 Vaccinium macrocarpon HOM05D003484 ORTHO05D004152 2.4e-08 61.6 59 61.0
vmacro22965 Vaccinium macrocarpon HOM05D003484 ORTHO05D004152 2.4e-08 61.6 59 61.0
Aa31LG4G5630 Aethionema arabicum HOM05D003484 ORTHO05D004152 3.2e-08 61.2 47 68.1
CiPaw.07G051700 Carya illinoinensis HOM05D003484 ORTHO05D004152 3.2e-08 61.2 47 68.1
Ciclev10025538m.g Citrus clementina HOM05D003484 ORTHO05D004152 3.2e-08 61.2 47 68.1
Haze_22558 Corylus avellana HOM05D003484 ORTHO05D004152 3.2e-08 61.2 47 70.2
FAN28G1582 Fragaria x ananassa HOM05D003484 ORTHO05D004152 3.2e-08 61.2 47 70.2
Manes.02G098300 Manihot esculenta HOM05D003484 ORTHO05D004152 3.2e-08 61.2 47 70.2
vmacro17803 Vaccinium macrocarpon HOM05D003484 ORTHO05D004152 3.2e-08 61.2 47 70.2
ATR1154G013 Amborella trichopoda HOM05D003484 ORTHO05D004152 4.1e-08 60.8 47 72.3
Cfa006912 Carpinus fangiana HOM05D003484 ORTHO05D004152 4.1e-08 60.8 47 68.1
Haze_03844 Corylus avellana HOM05D003484 ORTHO05D004152 4.1e-08 60.8 47 68.1
Dinv40029 Davidia involucrata HOM05D003484 ORTHO05D004152 4.1e-08 60.8 47 70.2
Duzib264G1245 Durio zibethinus HOM05D003484 ORTHO05D004152 4.1e-08 60.8 47 70.2
Migut.N00471 Erythranthe guttata HOM05D003484 ORTHO05D004152 4.1e-08 60.8 47 61.7
Gorai.009G198800 Gossypium raimondii HOM05D003484 ORTHO05D004152 4.1e-08 60.8 47 70.2
Manes.05G154900 Manihot esculenta HOM05D003484 ORTHO05D004152 4.1e-08 60.8 47 70.2
PGR119G1492 Punica granatum HOM05D003484 ORTHO05D004152 4.1e-08 60.8 47 70.2
Thecc.08G033900 Theobroma cacao HOM05D003484 ORTHO05D004152 4.1e-08 60.8 47 70.2
TWI09G1204 Tripterygium wilfordii HOM05D003484 ORTHO05D004152 4.1e-08 60.8 47 70.2
vmacro17721 Vaccinium macrocarpon HOM05D003484 ORTHO05D004152 4.1e-08 60.8 59 61.0
CSS0022746 Camellia sinensis var. sinensis HOM05D003484 ORTHO05D004152 5.4e-08 60.5 59 57.6
Gohir.D03G012300 Gossypium hirsutum HOM05D003484 ORTHO05D004152 5.4e-08 60.5 59 61.0
MD15G1252500 Malus domestica HOM05D003484 ORTHO05D004152 5.4e-08 60.5 47 68.1
Medtr3g112280 Medicago truncatula HOM05D003484 ORTHO05D004152 5.4e-08 60.5 47 70.2
Rhsim07G0243200 Rhododendron simsii HOM05D003484 ORTHO05D004152 5.4e-08 60.5 47 70.2
CsaV3_7G032510 Cucumis sativus L. HOM05D003484 ORTHO05D006651 7.1e-08 60.1 46 73.9
Duzib147G0644 Durio zibethinus HOM05D003484 ORTHO05D004152 7.1e-08 60.1 47 68.1
ECA246G2959 Erigeron canadensis HOM05D003484 ORTHO05D004152 7.1e-08 60.1 59 59.3
FAN23G1432 Fragaria x ananassa HOM05D003484 ORTHO05D004152 7.1e-08 60.1 47 70.2
Gohir.A02G167700 Gossypium hirsutum HOM05D003484 ORTHO05D004152 7.1e-08 60.1 47 70.2
Gorai.003G012600 Gossypium raimondii HOM05D003484 ORTHO05D004152 7.1e-08 60.1 47 70.2
Lalb_Chr14g0369551 Lupinus albus HOM05D003484 ORTHO05D004152 7.1e-08 60.1 47 68.1
Nitab4.5_0000723g0130 Nicotiana tabacum HOM05D003484 ORTHO05D004152 7.1e-08 60.1 47 68.1
Potri.002G031300 Populus trichocarpa HOM05D003484 ORTHO05D004152 7.1e-08 60.1 47 70.2
TWI73G0581 Tripterygium wilfordii HOM05D003484 ORTHO05D004152 7.1e-08 60.1 59 59.3
VMungo0647G0645 Vigna mungo HOM05D003484 ORTHO05D004152 7.1e-08 60.1 47 70.2
Cpa.g.sc99.5 Carica papaya HOM05D003484 ORTHO05D004152 9.2e-08 59.7 47 70.2
Eucgr.F01601 Eucalyptus grandis HOM05D003484 ORTHO05D004152 9.2e-08 59.7 47 68.1
Lj2A458T67 Lonicera japonica HOM05D003484 ORTHO05D004152 9.2e-08 59.7 59 59.3
Lj1g0000425 Lotus japonicus HOM05D003484 ORTHO05D004152 9.2e-08 59.7 47 70.2
Nitab4.5_0003883g0010 Nicotiana tabacum HOM05D003484 ORTHO05D004152 9.2e-08 59.7 47 68.1
TAR381G1532 Trochodendron aralioides HOM05D003484 ORTHO05D004152 9.2e-08 59.7 47 70.2
Actinidia19218 Actinidia chinensis HOM05D003484 ORTHO05D004152 1.2e-07 59.3 59 57.6
MSTRG.24276 Avicennia marina HOM05D003484 ORTHO05D004152 1.2e-07 59.3 47 63.8
Lj4A208T85 Lonicera japonica HOM05D003484 ORTHO05D004152 1.2e-07 59.3 47 70.2
THA.LOC104809282 Tarenaya hassleriana HOM05D003484 ORTHO05D004152 1.2e-07 59.3 47 66.0
MBI10_g00745_MAGBIO Magnolia biondii HOM05D003484 ORTHO05D004152 1.6e-07 58.9 47 66.0
PGR083G0895 Punica granatum HOM05D003484 ORTHO05D004152 1.6e-07 58.9 47 68.1
Sed0018306 Sechium edule HOM05D003484 ORTHO05D004152 1.6e-07 58.9 47 70.2
GSVIVG01009775001 Vitis vinifera HOM05D003484 ORTHO05D004152 1.6e-07 58.9 47 68.1
ECA232G1269 Erigeron canadensis HOM05D003484 ORTHO05D004152 2.1e-07 58.5 59 59.3
Gohir.D05G193800 Gossypium hirsutum HOM05D003484 ORTHO05D004152 2.1e-07 58.5 47 68.1
Psat5g015440 Pisum sativum HOM05D003484 ORTHO05D004152 2.1e-07 58.5 47 70.2
Solyc02g084820.3 Solanum lycopersicum HOM05D003484 ORTHO05D004152 2.1e-07 58.5 47 66.0
Sopen02g029490 Solanum pennellii HOM05D003484 ORTHO05D004152 2.1e-07 58.5 47 66.0
PGSC0003DMG400003612 Solanum tuberosum HOM05D003484 ORTHO05D004152 2.1e-07 58.5 47 66.0
Ciclev10017358m.g Citrus clementina HOM05D003484 ORTHO05D004152 2.7e-07 58.2 48 64.6
CSS0044139 Camellia sinensis var. sinensis HOM05D003484 ORTHO05D004152 3.5e-07 57.8 47 63.8
FAN27G3362 Fragaria x ananassa HOM05D003484 ORTHO05D004152 3.5e-07 57.8 47 68.1
Nn5g29711 Nelumbo nucifera HOM05D003484 ORTHO05D004152 3.5e-07 57.8 47 66.0
Peaxi162Scf00418g00928 Petunia axillaris HOM05D003484 ORTHO05D004152 3.5e-07 57.8 47 66.0
Atru.chr3.681 Acer truncatum HOM05D003484 ORTHO05D004152 4.6e-07 57.4 47 68.1
COL.COLO4_26239 Corchorus olitorius HOM05D003484 ORTHO05D004152 4.6e-07 57.4 46 67.4
FvH4_2g39300 Fragaria vesca HOM05D003484 ORTHO05D004152 4.6e-07 57.4 47 68.1
FAN15G3469 Fragaria x ananassa HOM05D003484 ORTHO05D004152 4.6e-07 57.4 47 68.1
FAN20G2901 Fragaria x ananassa HOM05D003484 ORTHO05D004152 4.6e-07 57.4 47 68.1
FAN26G2370 Fragaria x ananassa HOM05D003484 ORTHO05D004152 4.6e-07 57.4 47 68.1
Gohir.D11G188000 Gossypium hirsutum HOM05D003484 ORTHO05D004152 4.6e-07 57.4 47 68.1
Gorai.007G199800 Gossypium raimondii HOM05D003484 ORTHO05D004152 4.6e-07 57.4 47 68.1
HanXRQChr09g0261231 Helianthus annuus HOM05D003484 ORTHO05D004152 4.6e-07 57.4 59 57.6
Prupe.1G374100 Prunus persica HOM05D003484 ORTHO05D004152 4.6e-07 57.4 47 68.1
Lsat_1_v5_gn_3_74821 Lactuca sativa HOM05D003484 ORTHO05D004152 6.0e-07 57.0 59 55.9
Cc10_g02440 Coffea canephora HOM05D003484 ORTHO05D004152 7.8e-07 56.6 47 63.8
Lsat_1_v5_gn_4_151800 Lactuca sativa HOM05D003484 ORTHO05D004152 7.8e-07 56.6 47 66.0
MD02G1139400 Malus domestica HOM05D003484 ORTHO05D004152 7.8e-07 56.6 47 63.8
PSO541G2144 Papaver somniferum HOM05D003484 ORTHO05D004152 7.8e-07 56.6 47 66.0
Actinidia37993 Actinidia chinensis HOM05D003484 ORTHO05D004152 1.0e-06 56.2 47 66.0
PSO447G0175 Papaver somniferum HOM05D003484 ORTHO05D004152 1.0e-06 56.2 47 63.8
MD15G1022300 Malus domestica HOM05D003484 ORTHO05D004152 1.3e-06 55.8 47 66.0
TPR.G12425 Trifolium pratense HOM05D003484 ORTHO05D004152 1.3e-06 55.8 47 66.0
Cc07_g10050 Coffea canephora HOM05D003484 ORTHO05D004152 1.7e-06 55.5 47 61.7
RcHm_v2.0_Chr6g0301701 Rosa chinensis HOM05D003484 ORTHO05D004152 1.7e-06 55.5 47 66.0
Ca_02077_v3 Cicer arietinum L. HOM05D003484 ORTHO05D004152 2.3e-06 55.1 47 66.0
SEGI_00807 Sequoiadendron giganteum HOM05D003484 ORTHO05D004152 2.3e-06 55.1 47 61.7
HPP92_016115 Vanilla planifolia HOM05D003484 ORTHO05D004152 2.3e-06 55.1 59 54.2
GSVIVG01018875001 Vitis vinifera HOM05D003484 ORTHO05D004152 2.3e-06 55.1 46 65.2
Oeu007033.1 Olea europaea HOM05D003484 ORTHO05D004152 3.0e-06 54.7 47 63.8
Ah.14g085970 Amaranthus hybridus HOM05D003484 ORTHO05D004152 3.9e-06 54.3 59 52.5
PSO675G7417 Papaver somniferum HOM05D003484 ORTHO05D004152 3.9e-06 54.3 46 63.0
PSO210G1712 Papaver somniferum HOM05D003484 ORTHO05D004152 5.1e-06 53.9 47 61.7
Zm00001eb128410 Zea mays HOM05D003484 ORTHO05D004152 5.1e-06 53.9 47 61.7
CANSAT25G0607 Cannabis sativa HOM05D003484 ORTHO05D004152 6.6e-06 53.5 47 59.6


User provided reference genes

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