Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR211000 Cardamine hirsuta HOM05D005843 ORTHO05D007781 5.9e-294 1013.4 510 100.0
AL6G11640 Arabidopsis lyrata HOM05D005843 ORTHO05D007781 5.6e-244 847.4 494 85.0
Carub.0006s0120 Capsella rubella HOM05D005843 ORTHO05D007781 2.8e-243 845.1 512 82.6
BolC9t60149H Brassica oleracea HOM05D005843 ORTHO05D007781 1.8e-242 842.4 510 81.0
Sp6g40070 Schrenkiella parvula HOM05D005843 ORTHO05D007781 4.0e-242 841.3 510 82.4
Thhalv10013300m.g Eutrema salsugineum HOM05D005843 ORTHO05D007781 6.9e-242 840.5 510 81.6
BcaNung02129 Brassica carinata HOM05D005843 ORTHO05D007781 3.4e-241 838.2 508 80.9
AT5G02410 Arabidopsis thaliana HOM05D005843 ORTHO05D007781 1.3e-240 836.3 510 81.6
BcaNung05922 Brassica carinata HOM05D005843 ORTHO05D007781 2.9e-240 835.1 511 80.8
A10p33250 Brassica napus HOM05D005843 ORTHO05D007781 4.2e-239 831.2 511 80.6
A03p00670 Brassica napus HOM05D005843 ORTHO05D007781 7.6e-233 810.4 511 79.3
C03p00940 Brassica napus HOM05D005843 ORTHO05D007781 7.6e-233 810.4 508 80.1
BolC3t12656H Brassica oleracea HOM05D005843 ORTHO05D007781 7.6e-233 810.4 508 80.1
BcaB01g06160 Brassica carinata HOM05D005843 ORTHO05D007781 5.4e-231 804.3 508 79.3
BraA03t09456Z Brassica rapa HOM05D005843 ORTHO05D007781 2.1e-230 802.4 521 77.9
BcaC06g31988 Brassica carinata HOM05D005843 ORTHO05D007781 3.0e-229 798.5 512 78.5
C09p74160 Brassica napus HOM05D005843 ORTHO05D007781 1.6e-222 776.2 485 79.0
Aa31LG1G22390 Aethionema arabicum HOM05D005843 ORTHO05D007781 1.8e-221 772.7 581 69.7
THA.LOC104809903 Tarenaya hassleriana HOM05D005843 ORTHO05D007781 8.5e-200 700.7 512 70.7
Atru.chr8.1969 Acer truncatum HOM05D005843 ORTHO05D007781 1.8e-181 639.8 514 62.8
Thecc.05G040300 Theobroma cacao HOM05D005843 ORTHO05D007781 2.0e-180 636.3 513 63.9
Cpa.g.sc332.7 Carica papaya HOM05D005843 ORTHO05D007781 4.4e-180 635.2 512 64.3
GSVIVG01034179001 Vitis vinifera HOM05D005843 ORTHO05D007781 1.4e-178 630.2 517 60.9
Duzib128G1977 Durio zibethinus HOM05D005843 ORTHO05D007781 1.2e-177 627.1 532 60.9
Gohir.A09G156300 Gossypium hirsutum HOM05D005843 ORTHO05D007781 2.7e-177 625.9 514 61.1
Gorai.006G173000 Gossypium raimondii HOM05D005843 ORTHO05D007781 7.7e-177 624.4 514 61.1
Haze_20785 Corylus avellana HOM05D005843 ORTHO05D007781 2.9e-176 622.5 528 61.0
Gohir.D09G151700 Gossypium hirsutum HOM05D005843 ORTHO05D007781 5.0e-176 621.7 514 60.7
QL06p005681 Quercus lobata HOM05D005843 ORTHO05D007781 1.6e-174 616.7 513 61.6
CiPaw.09G192200 Carya illinoinensis HOM05D005843 ORTHO05D007781 2.7e-174 615.9 514 60.5
Eucgr.K03141 Eucalyptus grandis HOM05D005843 ORTHO05D007781 2.3e-173 612.8 513 59.6
Manes.17G047400 Manihot esculenta HOM05D005843 ORTHO05D007781 2.3e-173 612.8 514 60.1
TWI38G1602 Tripterygium wilfordii HOM05D005843 ORTHO05D007781 8.8e-173 610.9 512 60.2
ECA238G1173 Erigeron canadensis HOM05D005843 ORTHO05D007781 3.4e-172 609.0 512 58.0
MELO3C003129.2 Cucumis melo HOM05D005843 ORTHO05D007781 5.7e-172 608.2 514 59.7
Hma1.2p1_1513F.1_g288040 Hydrangea macrophylla HOM05D005843 ORTHO05D007781 2.8e-171 605.9 516 59.7
RcHm_v2.0_Chr3g0466751 Rosa chinensis HOM05D005843 ORTHO05D007781 3.7e-171 605.5 516 60.7
TAR633G1568 Trochodendron aralioides HOM05D005843 ORTHO05D007781 6.3e-171 604.7 516 58.9
MD12G1140900 Malus domestica HOM05D005843 ORTHO05D007781 1.4e-170 603.6 514 60.5
PSO151G0180 Papaver somniferum HOM05D005843 ORTHO05D007781 4.1e-170 602.1 515 58.6
PSO339G2649 Papaver somniferum HOM05D005843 ORTHO05D007781 7.0e-170 601.3 515 59.0
FAN05G5617 Fragaria x ananassa HOM05D005843 ORTHO05D007781 9.1e-170 600.9 511 60.1
DCAR_014847 Daucus carota HOM05D005843 ORTHO05D007781 1.6e-169 600.1 516 59.1
Oeu024347.1 Olea europaea HOM05D005843 ORTHO05D007781 2.0e-169 599.7 514 57.6
Prupe.6G254200 Prunus persica HOM05D005843 ORTHO05D007781 4.5e-169 598.6 514 62.3
Lalb_Chr19g0125371 Lupinus albus HOM05D005843 ORTHO05D007781 1.0e-168 597.4 514 59.3
FAN14G2296 Fragaria x ananassa HOM05D005843 ORTHO05D007781 1.3e-168 597.0 511 59.7
CsaV3_4G024980 Cucumis sativus L. HOM05D005843 ORTHO05D007781 2.3e-168 596.3 513 59.6
Lj3C968G10 Lonicera japonica HOM05D005843 ORTHO05D007781 8.6e-168 594.3 552 56.7
Sc20g0004950 Simmondsia chinensis HOM05D005843 ORTHO05D007781 8.6e-168 594.3 514 57.8
TPR.G23290 Trifolium pratense HOM05D005843 ORTHO05D007781 1.5e-167 593.6 515 58.6
Medtr7g060680 Medicago truncatula HOM05D005843 ORTHO05D007781 1.9e-167 593.2 514 58.8
QL11p021821 Quercus lobata HOM05D005843 ORTHO05D007781 7.2e-167 591.3 555 54.8
Cc06_g02690 Coffea canephora HOM05D005843 ORTHO05D007781 2.1e-166 589.7 514 58.2
MD04G1127500 Malus domestica HOM05D005843 ORTHO05D007781 2.1e-166 589.7 511 60.3
Ca_26026_v3 Cicer arietinum L. HOM05D005843 ORTHO05D007781 8.0e-166 587.8 514 58.8
CANSAT35G1785 Cannabis sativa HOM05D005843 ORTHO05D007781 2.3e-165 586.3 525 59.0
Nn8g39667 Nelumbo nucifera HOM05D005843 ORTHO05D007781 1.2e-164 583.9 520 57.3
Rhsim05G0192300 Rhododendron simsii HOM05D005843 ORTHO05D007781 5.7e-164 581.6 516 58.3
Migut.J00332 Erythranthe guttata HOM05D005843 ORTHO05D007781 2.8e-163 579.3 516 58.7
ClCG04G008190 Citrullus lanatus HOM05D005843 ORTHO05D007781 4.9e-163 578.6 514 58.6
PGR004G0455 Punica granatum HOM05D005843 ORTHO05D007781 1.1e-162 577.4 522 56.7
Glyma.07G131100 Glycine max HOM05D005843 ORTHO05D007781 1.8e-162 576.6 513 56.1
Sed0019468 Sechium edule HOM05D005843 ORTHO05D007781 2.4e-162 576.2 486 60.7
Psat5g101400 Pisum sativum HOM05D005843 ORTHO05D007781 5.4e-162 575.1 514 57.6
Nitab4.5_0001190g0070 Nicotiana tabacum HOM05D005843 ORTHO05D007781 4.5e-161 572.0 517 58.0
Hund24578 Selenicereus undatus HOM05D005843 ORTHO05D007781 7.8e-161 571.2 514 57.6
CAN.G326.14 Capsicum annuum HOM05D005843 ORTHO05D007781 2.3e-160 569.7 517 56.7
PGSC0003DMG400008911 Solanum tuberosum HOM05D005843 ORTHO05D007781 2.3e-160 569.7 517 57.3
VMungo1383G2898 Vigna mungo HOM05D005843 ORTHO05D007781 6.6e-160 568.2 517 56.5
Aqoxy6G01388 Aquilegia oxysepala HOM05D005843 ORTHO05D007781 2.5e-159 566.2 515 55.5
Sopen09g005490 Solanum pennellii HOM05D005843 ORTHO05D007781 2.5e-159 566.2 517 55.9
EL10Ac3g07255 Beta vulgaris HOM05D005843 ORTHO05D007781 5.6e-159 565.1 515 57.5
HanXRQChr16g0515781 Helianthus annuus HOM05D005843 ORTHO05D007781 9.5e-159 564.3 494 56.5
Lsat_1_v5_gn_2_17401 Lactuca sativa HOM05D005843 ORTHO05D007781 8.0e-158 561.2 507 55.8
SalBow3G1829 Salvia bowleyana HOM05D005843 ORTHO05D007781 1.0e-157 560.8 512 54.5
arahy.Tifrunner.gnm1.ann1.JAB43P Arachis hypogaea HOM05D005843 ORTHO05D007781 1.4e-157 560.5 517 56.3
Phvul.008G100900 Phaseolus vulgaris HOM05D005843 ORTHO05D007781 3.4e-156 555.8 514 56.4
FAN09G3893 Fragaria x ananassa HOM05D005843 ORTHO05D007781 5.7e-156 555.1 521 57.0
Peaxi162Scf00165g01322 Petunia axillaris HOM05D005843 ORTHO05D007781 5.7e-156 555.1 555 53.3
FAN02G2362 Fragaria x ananassa HOM05D005843 ORTHO05D007781 3.7e-155 552.4 542 55.4
Solyc09g010770.3 Solanum lycopersicum HOM05D005843 ORTHO05D007781 1.4e-154 550.4 511 54.2
SGA_v2.0_scaffold75G24948 Striga asiatica HOM05D005843 ORTHO05D007781 7.0e-154 548.1 514 55.3
CSS0035027 Camellia sinensis var. sinensis HOM05D005843 ORTHO05D007781 4.0e-149 532.3 463 61.8
HPP92_000805 Vanilla planifolia HOM05D005843 ORTHO05D007781 1.5e-148 530.4 515 52.2
Hma1.2p1_1513F.1_g288030 Hydrangea macrophylla HOM05D005843 ORTHO05D007781 1.1e-146 524.2 464 58.4
AUR62030297 Chenopodium quinoa HOM05D005843 ORTHO05D007781 6.0e-145 518.5 594 49.5
Actinidia26464 Actinidia chinensis HOM05D005843 ORTHO05D000250 1.3e-144 517.3 438 61.9
Dinv35609 Davidia involucrata HOM05D005843 ORTHO05D007781 3.6e-142 509.2 430 60.9
Glyma.18G179500 Glycine max HOM05D005843 ORTHO05D007781 2.2e-139 500.0 515 51.5
SHI00339 Sapria himalayana HOM05D005843 ORTHO05D007781 1.0e-136 491.1 536 49.3
Sabra06G0064400 Salix brachista HOM05D005843 ORTHO05D007781 1.9e-135 486.9 519 52.8
Pp3c4_12410 Physcomitrium patens HOM05D005843 ORTHO05D007781 8.4e-131 471.5 523 48.2
Lj3g0024665 Lotus japonicus HOM05D005843 ORTHO05D007781 1.6e-129 467.2 455 54.3
unitig_26.g9195 Utricularia gibba HOM05D005843 ORTHO05D007781 1.1e-127 461.1 463 53.8
AUR62015928 Chenopodium quinoa HOM05D005843 ORTHO05D007781 5.6e-127 458.8 510 49.4
Os04g0503700 Oryza sativa ssp. japonica HOM05D005843 ORTHO05D007781 2.9e-123 446.4 471 48.8
FvH4_6g13910 Fragaria vesca HOM05D005843 ORTHO05D007781 6.0e-113 412.1 374 58.3
BcaC06g31987 Brassica carinata HOM05D005843 ORTHO05D007781 7.9e-113 411.8 318 68.9
arahy.Tifrunner.gnm1.ann1.HAEF8J Arachis hypogaea HOM05D005843 ORTHO05D007781 3.0e-112 409.8 387 55.6
SMO137G0039 Selaginella moellendorffii HOM05D005843 ORTHO05D007781 8.4e-107 391.7 524 42.0
Mapoly0047s0019 Marchantia polymorpha HOM05D005843 ORTHO05D007781 1.1e-101 374.8 528 41.9
Dinv37176 Davidia involucrata HOM05D005843 ORTHO05D007781 7.6e-100 368.6 340 56.2
BcaNung05921 Brassica carinata HOM05D002515 ORTHO05D002722 2.2e-99 367.1 373 56.8
AUR62018365 Chenopodium quinoa HOM05D005843 ORTHO05D007781 5.0e-91 339.3 378 51.6
CDE09G0345 Ceratophyllum demersum HOM05D005843 ORTHO05D007781 3.9e-88 329.7 460 43.0
A03p00710 Brassica napus HOM05D005843 ORTHO05D007781 8.8e-88 328.6 196 82.1
ATR0585G056 Amborella trichopoda HOM05D005843 ORTHO05D007781 2.8e-86 323.6 387 45.7
Potri.006G084800 Populus trichocarpa HOM05D005843 ORTHO05D007781 3.1e-85 320.1 330 54.5
vmacro20152 Vaccinium macrocarpon HOM05D005843 ORTHO05D007781 4.5e-84 316.2 442 45.2
Zm00001eb078080 Zea mays HOM05D005843 ORTHO05D007781 1.4e-77 294.7 345 44.9
Nitab4.5_0002018g0090 Nicotiana tabacum HOM05D005843 ORTHO05D007781 1.5e-71 274.6 264 56.8
AagrBONN_evm.TU.Sc2ySwM_117.1914 Anthoceros agrestis HOM05D005843 ORTHO05D007781 2.8e-70 270.4 438 36.5
SGA_v2.0_scaffold75G24944 Striga asiatica HOM05D005843 ORTHO05D007781 1.2e-65 255.0 425 40.0
CBR_g29861 Chara braunii HOM05D005843 ORTHO05D000002 3.6e-57 226.9 360 40.3
Cre01.g041300 Chlamydomonas reinhardtii HOM05D005843 ORTHO05D007781 2.3e-51 207.6 534 29.4
TAR636G2087 Trochodendron aralioides HOM05D005843 ORTHO05D007781 1.6e-49 201.4 171 59.6
DCAR_015734 Daucus carota HOM05D005843 ORTHO05D007781 9.5e-42 175.6 136 61.0
VMungo1309G2290 Vigna mungo HOM05D005843 ORTHO05D007781 8.9e-40 169.1 135 60.7
TAR636G1000 Trochodendron aralioides HOM05D005843 ORTHO05D007781 3.2e-37 160.6 127 62.2
TAR636G1324 Trochodendron aralioides HOM05D005843 ORTHO05D007781 3.2e-37 160.6 127 62.2
Haze_26583 Corylus avellana HOM05D005843 ORTHO05D007781 1.2e-36 158.7 509 29.5
C03p92170 Brassica napus HOM05D005843 ORTHO05D040940 3.5e-28 130.6 67 92.5
BolC3t21533H Brassica oleracea HOM05D005843 ORTHO05D040940 3.5e-28 130.6 67 92.5
BraA10t45356Z Brassica rapa HOM05D005843 ORTHO05D007781 6.6e-27 126.3 65 86.2
AUR62040681 Chenopodium quinoa HOM05D005843 ORTHO05D007781 5.6e-26 123.2 192 38.5
DCAR_015735 Daucus carota HOM05D005843 ORTHO05D007781 4.9e-22 110.2 60 81.7
TAR636G3605 Trochodendron aralioides HOM05D005843 ORTHO05D007781 7.8e-20 102.8 57 75.4
SEGI_06123 Sequoiadendron giganteum HOM05D005843 ORTHO05D007781 5.1e-19 100.1 119 43.7
Hma1.2p1_1611F.1_g293520 Hydrangea macrophylla HOM05D005843 ORTHO05D007781 6.6e-19 99.8 52 84.6
SEGI_08652 Sequoiadendron giganteum HOM05D005843 ORTHO05D000001 1.6e-17 95.1 59 69.5
VMungo1309G1664 Vigna mungo HOM05D005843 ORTHO05D007781 9.9e-15 85.9 221 32.6
TAR636G0893 Trochodendron aralioides HOM05D005843 ORTHO05D007781 3.5e-12 77.4 67 61.2
SEGI_16582 Sequoiadendron giganteum HOM05D005843 ORTHO05D014789 6.2e-09 66.6 139 35.3


User provided reference genes

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