Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR210840 Cardamine hirsuta HOM05D003174 ORTHO05D003439 1.5e-208 729.6 452 100.0
AL6G11780 Arabidopsis lyrata HOM05D003174 ORTHO05D003439 1.7e-114 417.2 529 53.9
AT5G02520 Arabidopsis thaliana HOM05D003174 ORTHO05D003439 1.5e-110 404.1 608 51.2
Thhalv10015290m.g Eutrema salsugineum HOM05D003174 ORTHO05D003439 8.5e-103 378.3 605 48.9
Sp6g39990 Schrenkiella parvula HOM05D003174 ORTHO05D003439 1.8e-92 344.0 621 42.8
Carub.0006s0132 Capsella rubella HOM05D003174 ORTHO05D003439 3.5e-88 329.7 718 36.1
Aa31LG1G22280 Aethionema arabicum HOM05D003174 ORTHO05D003439 1.5e-86 324.3 464 47.0
BcaB05g21888 Brassica carinata HOM05D003174 ORTHO05D003439 9.2e-81 305.1 565 41.4
BolC2t06049H Brassica oleracea HOM05D003174 ORTHO05D003439 1.1e-78 298.1 462 45.7
C02p00500 Brassica napus HOM05D003174 ORTHO05D003439 5.8e-75 285.8 438 45.4
BraA02t04720Z Brassica rapa HOM05D003174 ORTHO05D003439 4.3e-70 269.6 489 40.7
THA.LOC104816287 Tarenaya hassleriana HOM05D003174 ORTHO05D003439 2.4e-57 227.3 501 36.1
BcaC03g13058 Brassica carinata HOM05D003174 ORTHO05D003439 4.4e-51 206.5 472 37.7
QL07p047847 Quercus lobata HOM05D003174 ORTHO05D003439 2.9e-34 150.6 439 29.4
GSVIVG01034205001 Vitis vinifera HOM05D003174 ORTHO05D003439 3.5e-32 143.7 471 27.6
CSS0007124 Camellia sinensis var. sinensis HOM05D003174 ORTHO05D003439 5.1e-31 139.8 542 26.2
Gohir.A09G157600 Gossypium hirsutum HOM05D003174 ORTHO05D003439 5.1e-31 139.8 444 26.8
Gorai.006G174400 Gossypium raimondii HOM05D003174 ORTHO05D003439 5.1e-31 139.8 444 26.6
Duzib106G0893 Durio zibethinus HOM05D003174 ORTHO05D003439 8.7e-31 139.0 431 25.3
Dinv35623 Davidia involucrata HOM05D003174 ORTHO05D003439 5.7e-30 136.3 435 26.4
Lj1g0011268 Lotus japonicus HOM05D003174 ORTHO05D003439 9.6e-30 135.6 110 56.4
Sed0000072 Sechium edule HOM05D003174 ORTHO05D003439 9.6e-30 135.6 426 26.5
Thecc.05G042400 Theobroma cacao HOM05D003174 ORTHO05D003439 9.6e-30 135.6 434 28.6
Manes.08G078100 Manihot esculenta HOM05D003174 ORTHO05D003439 3.1e-28 130.6 174 42.0
Cfa017411 Carpinus fangiana HOM05D003174 ORTHO05D003439 5.3e-28 129.8 114 52.6
Sabra04G0051000 Salix brachista HOM05D003174 ORTHO05D003439 6.9e-28 129.4 466 27.9
Actinidia11253 Actinidia chinensis HOM05D003174 ORTHO05D003439 1.5e-27 128.3 108 54.6
MD04G1124900 Malus domestica HOM05D003174 ORTHO05D003439 3.4e-27 127.1 118 47.5
CsaV3_4G024810 Cucumis sativus L. HOM05D003174 ORTHO05D003439 4.5e-27 126.7 119 48.7
Nn2g10415 Nelumbo nucifera HOM05D003174 ORTHO05D003439 4.5e-27 126.7 440 25.2
TAR623G0639 Trochodendron aralioides HOM05D003174 ORTHO05D003439 4.5e-27 126.7 124 46.0
Glyma.13G131100 Glycine max HOM05D003174 ORTHO05D003439 7.6e-27 125.9 490 25.7
Lalb_Chr06g0170971 Lupinus albus HOM05D003174 ORTHO05D003439 7.6e-27 125.9 128 46.1
CAN.G97.37 Capsicum annuum HOM05D003174 ORTHO05D003439 8.4e-26 122.5 115 46.1
Peaxi162Scf00165g01840 Petunia axillaris HOM05D003174 ORTHO05D003439 1.1e-25 122.1 116 49.1
Haze_20757 Corylus avellana HOM05D003174 ORTHO05D003439 2.5e-25 120.9 178 37.1
Prupe.6G252000 Prunus persica HOM05D003174 ORTHO05D003439 3.2e-25 120.6 484 26.0
VMungo1127G0815 Vigna mungo HOM05D003174 ORTHO05D003439 3.2e-25 120.6 426 26.5
MSTRG.924 Avicennia marina HOM05D003174 ORTHO05D003439 4.2e-25 120.2 488 26.6
QL07p031124 Quercus lobata HOM05D003174 ORTHO05D003439 7.1e-25 119.4 173 37.6
Lj3A970G57 Lonicera japonica HOM05D003174 ORTHO05D003439 1.2e-24 118.6 416 24.5
Cpa.g.sc260.5 Carica papaya HOM05D003174 ORTHO05D003439 3.5e-24 117.1 103 49.5
Solyc09g010550.4 Solanum lycopersicum HOM05D003174 ORTHO05D003439 3.5e-24 117.1 113 47.8
Sopen09g005270 Solanum pennellii HOM05D003174 ORTHO05D003439 3.5e-24 117.1 113 47.8
Nitab4.5_0000761g0050 Nicotiana tabacum HOM05D003174 ORTHO05D003439 4.6e-24 116.7 100 51.0
Nitab4.5_0004091g0070 Nicotiana tabacum HOM05D003174 ORTHO05D003439 6.1e-24 116.3 100 51.0
CANSAT21G1894 Cannabis sativa HOM05D003174 ORTHO05D003439 7.9e-24 115.9 467 28.1
TAR629G3457 Trochodendron aralioides HOM05D003174 ORTHO05D003439 1.0e-23 115.5 124 42.7
TWI53G0288 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 1.3e-23 115.2 510 24.9
MELO3C003115.2 Cucumis melo HOM05D003174 ORTHO05D003439 3.0e-23 114.0 441 24.5
SGA_v2.0_scaffold6G03139 Striga asiatica HOM05D003174 ORTHO05D003439 3.0e-23 114.0 467 24.6
Migut.C00381 Erythranthe guttata HOM05D003174 ORTHO05D003439 3.9e-23 113.6 134 41.8
Potri.004G077400 Populus trichocarpa HOM05D003174 ORTHO05D003439 6.7e-23 112.8 549 24.6
Ciclev10011079m.g Citrus clementina HOM05D003174 ORTHO05D003439 1.5e-22 111.7 139 39.6
Phvul.007G157300 Phaseolus vulgaris HOM05D003174 ORTHO05D003439 1.9e-22 111.3 458 23.8
PGR004G2807 Punica granatum HOM05D003174 ORTHO05D003439 1.9e-22 111.3 177 35.6
MBI17_g16533_MAGBIO Magnolia biondii HOM05D003174 ORTHO05D003439 3.3e-22 110.5 150 38.0
RcHm_v2.0_Chr3g0467041 Rosa chinensis HOM05D003174 ORTHO05D003439 4.3e-22 110.2 150 38.0
GSVIVG01013578001 Vitis vinifera HOM05D003174 ORTHO05D003439 9.7e-22 109.0 122 44.3
Actinidia35877 Actinidia chinensis HOM05D003174 ORTHO05D003439 1.3e-21 108.6 117 43.6
Rhsim05G0189700 Rhododendron simsii HOM05D003174 ORTHO05D003439 1.6e-21 108.2 161 37.3
PGSC0003DMG400008848 Solanum tuberosum HOM05D003174 ORTHO05D003439 1.6e-21 108.2 507 24.1
arahy.Tifrunner.gnm1.ann1.FD13B1 Arachis hypogaea HOM05D003174 ORTHO05D003439 3.7e-21 107.1 119 39.5
Dinv22692 Davidia involucrata HOM05D003174 ORTHO05D003439 3.7e-21 107.1 121 40.5
Medtr1g069020 Medicago truncatula HOM05D003174 ORTHO05D003439 8.2e-21 105.9 113 44.2
Ca_27793_v3 Cicer arietinum L. HOM05D003174 ORTHO05D003439 1.1e-20 105.5 92 48.9
Eucgr.A00550 Eucalyptus grandis HOM05D003174 ORTHO05D003439 1.8e-20 104.8 136 35.3
arahy.Tifrunner.gnm1.ann1.6UZP51 Arachis hypogaea HOM05D003174 ORTHO05D003439 2.4e-20 104.4 417 24.0
PSO384G3329 Papaver somniferum HOM05D035235 ORTHO05D003439 3.1e-20 104.0 110 42.7
Nn1g09826 Nelumbo nucifera HOM05D003174 ORTHO05D003439 4.1e-20 103.6 99 48.5
arahy.Tifrunner.gnm1.ann1.IJS1VI Arachis hypogaea HOM05D003174 ORTHO05D003439 5.3e-20 103.2 419 24.1
HanXRQChr08g0226171 Helianthus annuus HOM05D003174 ORTHO05D003439 5.3e-20 103.2 447 23.3
Medtr1g069015 Medicago truncatula HOM05D003174 ORTHO05D003439 1.5e-19 101.7 488 22.5
TPR.G29857 Trifolium pratense HOM05D003174 ORTHO05D003439 2.0e-19 101.3 99 45.5
TAR362G1036 Trochodendron aralioides HOM05D003174 ORTHO05D003439 2.0e-19 101.3 110 45.5
Aqoxy2G01410 Aquilegia oxysepala HOM05D003174 ORTHO05D003439 4.5e-19 100.1 114 38.6
Aqoxy4G02974 Aquilegia oxysepala HOM05D003051 ORTHO05D003932 4.5e-19 100.1 114 38.6
PSO339G3795 Papaver somniferum HOM05D003174 ORTHO05D003439 4.5e-19 100.1 110 41.8
Aqoxy4G02973 Aquilegia oxysepala HOM05D003174 ORTHO05D003439 1.3e-18 98.6 155 33.5
COL.COLO4_14835 Corchorus olitorius HOM05D003174 ORTHO05D003439 1.7e-18 98.2 495 23.0
Psat0s2930g0040 Pisum sativum HOM05D003174 ORTHO05D003439 5.0e-18 96.7 112 40.2
PSO541G3184 Papaver somniferum HOM05D003174 ORTHO05D003439 6.5e-18 96.3 114 42.1
arahy.Tifrunner.gnm1.ann1.Y7W1NJ Arachis hypogaea HOM05D003174 ORTHO05D003439 1.4e-17 95.1 419 24.8
PSO532G0060 Papaver somniferum HOM05D003174 ORTHO05D003439 1.9e-17 94.7 111 42.3
PSO675G7155 Papaver somniferum HOM05D003174 ORTHO05D003439 2.5e-17 94.4 115 41.7
Cfa015779 Carpinus fangiana HOM05D003174 ORTHO05D003439 4.2e-17 93.6 105 44.8
Cc06_g02840 Coffea canephora HOM05D003174 ORTHO05D003439 5.5e-17 93.2 94 45.7
Migut.H00512 Erythranthe guttata HOM05D003174 ORTHO05D003439 1.2e-16 92.0 170 31.2
Solyc04g015710.3 Solanum lycopersicum HOM05D003174 ORTHO05D003439 1.6e-16 91.7 103 46.6
CDE07G1712 Ceratophyllum demersum HOM05D003174 ORTHO05D003439 2.1e-16 91.3 97 43.3
HPP92_001613 Vanilla planifolia HOM05D003174 ORTHO05D003439 2.1e-16 91.3 98 42.9
Hma1.2p1_0324F.1_g125650 Hydrangea macrophylla HOM05D003174 ORTHO05D003439 3.6e-16 90.5 108 38.9
Hma1.2p1_3259F.1_g334646 Hydrangea macrophylla HOM05D003174 ORTHO05D003439 3.6e-16 90.5 108 38.9
Sopen04g007790 Solanum pennellii HOM05D003174 ORTHO05D003439 3.6e-16 90.5 105 47.6
Peaxi162Scf00066g01134 Petunia axillaris HOM05D003174 ORTHO05D003439 6.1e-16 89.7 104 43.3
Gohir.D09G152900 Gossypium hirsutum HOM05D003174 ORTHO05D003439 7.9e-16 89.4 391 22.8
Nitab4.5_0004701g0030 Nicotiana tabacum HOM05D003174 ORTHO05D003439 7.9e-16 89.4 117 40.2
CiPaw.02G056500 Carya illinoinensis HOM05D003174 ORTHO05D003439 1.0e-15 89.0 127 36.2
CAN.G74.6 Capsicum annuum HOM05D003174 ORTHO05D003439 1.4e-15 88.6 105 46.7
unitig_736.g22251 Utricularia gibba HOM05D003174 ORTHO05D003439 1.4e-15 88.6 100 41.0
FAN02G1934 Fragaria x ananassa HOM05D003174 ORTHO05D003439 2.3e-15 87.8 130 34.6
Glyma.10G043400 Glycine max HOM05D003174 ORTHO05D003439 2.3e-15 87.8 385 23.6
QL10p045460 Quercus lobata HOM05D003174 ORTHO05D003439 3.0e-15 87.4 114 40.4
Nitab4.5_0000847g0080 Nicotiana tabacum HOM05D003174 ORTHO05D003439 5.1e-15 86.7 103 42.7
FAN14G5980 Fragaria x ananassa HOM05D003174 ORTHO05D003439 6.7e-15 86.3 159 30.8
Ciclev10021601m.g Citrus clementina HOM05D003174 ORTHO05D003439 8.8e-15 85.9 106 40.6
FAN09G4813 Fragaria x ananassa HOM05D003174 ORTHO05D003439 1.1e-14 85.5 108 38.9
ECA233G2094 Erigeron canadensis HOM05D003174 ORTHO05D003439 1.5e-14 85.1 108 36.1
FvH4_6g25230 Fragaria vesca HOM05D003174 ORTHO05D003439 2.0e-14 84.7 166 31.3
Cc06_g06750 Coffea canephora HOM05D003174 ORTHO05D003439 3.3e-14 84.0 103 37.9
FAN05G5174 Fragaria x ananassa HOM05D003174 ORTHO05D003439 4.3e-14 83.6 112 36.6
SGA_v2.0_scaffold204G41637 Striga asiatica HOM05D003174 ORTHO05D003439 7.4e-14 82.8 156 32.1
FAN05G2164 Fragaria x ananassa HOM05D003174 ORTHO05D003439 1.3e-13 82.0 115 36.5
Potri.017G036100 Populus trichocarpa HOM05D003174 ORTHO05D003439 1.7e-13 81.6 101 42.6
BcaB04g20191 Brassica carinata HOM05D003174 ORTHO05D003439 2.2e-13 81.3 101 40.6
Psat2g183360 Pisum sativum HOM05D003174 ORTHO05D003439 2.2e-13 81.3 127 34.6
Sed0019898 Sechium edule HOM05D003174 ORTHO05D003439 2.2e-13 81.3 126 36.5
BcaC09g49501 Brassica carinata HOM05D003174 ORTHO05D003439 2.8e-13 80.9 104 40.4
Haze_00715 Corylus avellana HOM05D003174 ORTHO05D003439 2.8e-13 80.9 106 41.5
BraA01t02958Z Brassica rapa HOM05D001877 ORTHO05D001886 4.8e-13 80.1 112 38.4
TWI15G0304 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 4.8e-13 80.1 115 37.4
TWI15G0472 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 4.8e-13 80.1 115 37.4
BolC1t03544H Brassica oleracea HOM05D003174 ORTHO05D003439 8.2e-13 79.3 104 39.4
Haze_00723 Corylus avellana HOM05D000268 ORTHO05D000261 8.2e-13 79.3 109 39.4
Thhalv10023956m.g Eutrema salsugineum HOM05D001877 ORTHO05D001886 8.2e-13 79.3 94 41.5
TPR.G23103 Trifolium pratense HOM05D003174 ORTHO05D003439 1.4e-12 78.6 78 42.3
Gohir.D08G083400 Gossypium hirsutum HOM05D003174 ORTHO05D003439 1.8e-12 78.2 96 40.6
MELO3C017697.2 Cucumis melo HOM05D003174 ORTHO05D003439 2.4e-12 77.8 105 39.0
Duzib093G0200 Durio zibethinus HOM05D003174 ORTHO05D003439 2.4e-12 77.8 93 40.9
Sp2g05410 Schrenkiella parvula HOM05D001877 ORTHO05D001886 3.1e-12 77.4 93 39.8
Atru.chr3.1551 Acer truncatum HOM05D003174 ORTHO05D003439 4.1e-12 77.0 106 33.0
Gohir.A08G074200 Gossypium hirsutum HOM05D003174 ORTHO05D003439 5.3e-12 76.6 96 39.6
Gorai.004G087600 Gossypium raimondii HOM05D003174 ORTHO05D003439 5.3e-12 76.6 96 39.6
HanXRQChr13g0395031 Helianthus annuus HOM05D003174 ORTHO05D003439 5.3e-12 76.6 174 28.7
CARHR053810 Cardamine hirsuta HOM05D003174 ORTHO05D003439 6.9e-12 76.3 93 39.8
RcHm_v2.0_Chr4g0407561 Rosa chinensis HOM05D003174 ORTHO05D003439 6.9e-12 76.3 98 38.8
AT1G58210 Arabidopsis thaliana HOM05D003174 ORTHO05D003439 1.2e-11 75.5 94 39.4
CsaV3_4G003560 Cucumis sativus L. HOM05D003174 ORTHO05D003439 1.2e-11 75.5 105 37.1
Lsat_1_v5_gn_2_36541 Lactuca sativa HOM05D003174 ORTHO05D003439 1.5e-11 75.1 137 32.8
TPR.G21831 Trifolium pratense HOM05D000319 ORTHO05D003439 1.5e-11 75.1 169 28.4
CANSAT01G0457 Cannabis sativa HOM05D003174 ORTHO05D003439 3.4e-11 73.9 133 32.3
Ca_04778_v3 Cicer arietinum L. HOM05D003174 ORTHO05D003439 3.4e-11 73.9 102 36.3
HanXRQChr13g0395041 Helianthus annuus HOM05D003174 ORTHO05D003439 4.5e-11 73.6 134 34.3
THA.LOC104802302 Tarenaya hassleriana HOM05D003174 ORTHO05D003439 5.9e-11 73.2 93 38.7
AL2G18170 Arabidopsis lyrata HOM05D003174 ORTHO05D003439 7.7e-11 72.8 94 37.2
Eucgr.I00627 Eucalyptus grandis HOM05D003174 ORTHO05D003439 7.7e-11 72.8 91 34.1
Lj3g0014619 Lotus japonicus HOM05D003174 ORTHO05D003439 1.0e-10 72.4 96 38.5
PGR083G2046 Punica granatum HOM05D003174 ORTHO05D003439 1.3e-10 72.0 102 37.3
ECA233G3488 Erigeron canadensis HOM05D003174 ORTHO05D003439 2.2e-10 71.2 129 32.6
Sabra07G0100600 Salix brachista HOM05D003174 ORTHO05D003439 2.2e-10 71.2 104 37.5
TPR.G22580 Trifolium pratense HOM05D003174 ORTHO05D003439 2.2e-10 71.2 135 28.1
vmacro08698 Vaccinium macrocarpon HOM05D003174 ORTHO05D003439 2.2e-10 71.2 118 33.1
FvH4_4g11320 Fragaria vesca HOM05D003174 ORTHO05D003439 2.9e-10 70.9 98 38.8
MD04G1038200 Malus domestica HOM05D003174 ORTHO05D003439 2.9e-10 70.9 95 40.0
Potri.007G124300 Populus trichocarpa HOM05D003174 ORTHO05D003439 2.9e-10 70.9 98 37.8
ATR0019G037 Amborella trichopoda HOM05D003174 ORTHO05D003439 6.5e-10 69.7 118 34.7
EL10Ac4g08332 Beta vulgaris HOM05D003174 ORTHO05D003439 6.5e-10 69.7 122 32.8
AUR62019568 Chenopodium quinoa HOM05D003174 ORTHO05D003439 6.5e-10 69.7 135 34.1
FAN17G0897 Fragaria x ananassa HOM05D003174 ORTHO05D003439 6.5e-10 69.7 98 37.8
SHI29135 Sapria himalayana HOM05D003174 ORTHO05D003439 8.5e-10 69.3 101 33.7
EL10Ac4g08337 Beta vulgaris HOM05D003174 ORTHO05D003439 1.1e-09 68.9 122 31.1
AUR62043191 Chenopodium quinoa HOM05D003174 ORTHO05D003439 1.1e-09 68.9 142 33.8
arahy.Tifrunner.gnm1.ann1.7EM6TL Arachis hypogaea HOM05D003174 ORTHO05D003439 1.4e-09 68.6 142 29.6
arahy.Tifrunner.gnm1.ann1.T81LQ1 Arachis hypogaea HOM05D003174 ORTHO05D003439 1.4e-09 68.6 145 28.3
arahy.Tifrunner.gnm1.ann1.D9JBU2 Arachis hypogaea HOM05D003174 ORTHO05D003439 4.2e-09 67.0 154 26.6
Rhsim02G0075700 Rhododendron simsii HOM05D003174 ORTHO05D003439 4.2e-09 67.0 83 42.2
FAN07G2661 Fragaria x ananassa HOM05D003174 ORTHO05D003439 5.5e-09 66.6 98 36.7
Sc02g0004510 Simmondsia chinensis HOM05D003174 ORTHO05D003439 5.5e-09 66.6 100 38.0
ClCG07G015840 Citrullus lanatus HOM05D003174 ORTHO05D003439 9.4e-09 65.9 106 34.0
Carub.0002s0640 Capsella rubella HOM05D003174 ORTHO05D003439 1.2e-08 65.5 82 35.4
SHI12657 Sapria himalayana HOM05D003174 ORTHO05D003439 1.2e-08 65.5 67 43.3
PGSC0003DMG400027274 Solanum tuberosum HOM05D003174 ORTHO05D003439 4.7e-08 63.5 58 48.3
FAN09G4560 Fragaria x ananassa HOM05D003174 ORTHO05D003439 7.9e-08 62.8 121 30.6
TWI53G0119 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 2.3e-07 61.2 125 36.8
arahy.Tifrunner.gnm1.ann1.QHLS1J Arachis hypogaea HOM05D003174 ORTHO05D003439 3.0e-07 60.8 74 37.8
arahy.Tifrunner.gnm1.ann1.T4VAVP Arachis hypogaea HOM05D003174 ORTHO05D003439 3.0e-07 60.8 120 29.2
Os04g0347900 Oryza sativa ssp. japonica HOM05D003174 ORTHO05D003439 3.0e-07 60.8 93 34.4
Psat0s2930g0080 Pisum sativum HOM05D003174 ORTHO05D003439 4.4e-06 57.0 65 43.1


User provided reference genes

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