Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR210610 Cardamine hirsuta HOM05D010138 ORTHO05D006998 2.5e-84 315.8 214 100.0
AL6G12020 Arabidopsis lyrata HOM05D010138 ORTHO05D006998 5.7e-57 224.9 217 79.7
AT5G02770 Arabidopsis thaliana HOM05D010138 ORTHO05D006998 1.8e-55 219.9 217 78.8
Carub.0006s0153 Capsella rubella HOM05D010138 ORTHO05D006998 1.0e-53 214.2 219 76.3
Sp6g39810 Schrenkiella parvula HOM05D010138 ORTHO05D006998 3.6e-51 205.7 219 72.6
Thhalv10014656m.g Eutrema salsugineum HOM05D010138 ORTHO05D006998 1.3e-45 187.2 219 73.1
BcaB05g21871 Brassica carinata HOM05D010138 ORTHO05D006998 5.0e-45 185.3 224 70.5
Aa31LG1G22120 Aethionema arabicum HOM05D010138 ORTHO05D006998 1.4e-42 177.2 219 67.6
BcaNung03275 Brassica carinata HOM05D010138 ORTHO05D006998 2.9e-32 142.9 211 64.9
C09p73910 Brassica napus HOM05D010138 ORTHO05D006998 2.9e-32 142.9 214 65.4
THA.LOC104823246 Tarenaya hassleriana HOM05D010138 ORTHO05D006998 2.4e-31 139.8 215 56.7
BolC9t60125H Brassica oleracea HOM05D010138 ORTHO05D006998 4.6e-30 135.6 209 64.6
BraA10t45331Z Brassica rapa HOM05D010138 ORTHO05D006998 1.7e-24 117.1 224 63.4
BraA02t04729Z Brassica rapa HOM05D010138 ORTHO05D006998 2.2e-24 116.7 215 58.1
A10p32940 Brassica napus HOM05D010138 ORTHO05D006998 3.2e-23 112.8 133 64.7
BcaC03g13046 Brassica carinata HOM05D010138 ORTHO05D006998 9.2e-23 111.3 215 54.9
BolC2t06059H Brassica oleracea HOM05D010138 ORTHO05D006998 9.2e-23 111.3 215 54.9
C02p00640 Brassica napus HOM05D010138 ORTHO05D006998 2.3e-21 106.7 205 55.6
BolC7t43445H Brassica oleracea HOM05D001366 ORTHO05D008529 1.3e-16 90.9 62 79.0
C07p29060 Brassica napus HOM05D001366 ORTHO05D008529 4.1e-15 85.9 62 79.0
Prupe.6G244900 Prunus persica HOM05D007476 ORTHO05D006998 2.1e-14 83.6 162 46.9
Dinv35685 Davidia involucrata HOM05D007476 ORTHO05D006998 1.1e-12 77.8 125 43.2
Gohir.A09G160400 Gossypium hirsutum HOM05D007476 ORTHO05D006998 1.9e-12 77.0 155 45.8
Duzib093G1301 Durio zibethinus HOM05D007476 ORTHO05D006998 7.3e-12 75.1 196 48.5
Gohir.A04G077400 Gossypium hirsutum HOM05D007476 ORTHO05D006998 9.6e-12 74.7 104 49.0
Gohir.D04G116600 Gossypium hirsutum HOM05D007476 ORTHO05D006998 1.2e-11 74.3 104 49.0
FAN05G2812 Fragaria x ananassa HOM05D007476 ORTHO05D006998 2.8e-11 73.2 75 52.0
Gorai.006G177500 Gossypium raimondii HOM05D007476 ORTHO05D006998 3.6e-11 72.8 109 44.0
Gorai.009G421500 Gossypium raimondii HOM05D007476 ORTHO05D006998 3.6e-11 72.8 104 48.1
RcHm_v2.0_Chr3g0468131 Rosa chinensis HOM05D007476 ORTHO05D006998 3.6e-11 72.8 199 39.7
C08p37600 Brassica napus HOM05D000736 ORTHO05D017680 4.7e-11 72.4 65 66.2
BolC1t02963H Brassica oleracea HOM05D000736 ORTHO05D017680 4.7e-11 72.4 65 66.2
Gohir.A13G076000 Gossypium hirsutum HOM05D007476 ORTHO05D006998 4.7e-11 72.4 216 40.3
HanXRQChr14g0453431 Helianthus annuus HOM05D007476 ORTHO05D006998 6.2e-11 72.0 75 54.7
BcaC09g49216 Brassica carinata HOM05D010138 ORTHO05D006998 8.1e-11 71.6 72 61.1
C01p41300 Brassica napus HOM05D010138 ORTHO05D006998 8.1e-11 71.6 72 61.1
BolC1t04090H Brassica oleracea HOM05D010138 ORTHO05D006998 8.1e-11 71.6 72 61.1
C01p30220 Brassica napus HOM05D000736 ORTHO05D017680 1.1e-10 71.2 65 64.6
BcaC09g50000 Brassica carinata HOM05D034825 ORTHO05D032742 1.4e-10 70.9 56 73.2
BraA01t01586Z Brassica rapa HOM05D000736 ORTHO05D017680 1.4e-10 70.9 55 74.5
BcaC06g34403 Brassica carinata HOM05D001366 ORTHO05D003220 3.1e-10 69.7 43 86.0
Duzib128G0759 Durio zibethinus HOM05D007476 ORTHO05D006998 3.1e-10 69.7 111 52.3
A02p02510 Brassica napus HOM05D000736 ORTHO05D017680 4.0e-10 69.3 64 64.1
vmacro20080 Vaccinium macrocarpon HOM05D007476 ORTHO05D006998 8.9e-10 68.2 124 41.9
Thecc.05G050900 Theobroma cacao HOM05D007476 ORTHO05D006998 1.2e-09 67.8 151 47.7
Actinidia05282 Actinidia chinensis HOM05D007476 ORTHO05D006998 2.0e-09 67.0 84 51.2
Dinv37238 Davidia involucrata HOM05D007476 ORTHO05D006998 3.4e-09 66.2 75 50.7
Gorai.001G248500 Gossypium raimondii HOM05D007476 ORTHO05D006998 3.4e-09 66.2 216 38.9
BcaC06g31353 Brassica carinata HOM05D010138 ORTHO05D006998 4.4e-09 65.9 48 77.1
Cfa017474 Carpinus fangiana HOM05D007476 ORTHO05D006998 5.8e-09 65.5 199 32.7
Haze_20680 Corylus avellana HOM05D007476 ORTHO05D006998 5.8e-09 65.5 87 48.3
CiPaw.10G138800 Carya illinoinensis HOM05D007476 ORTHO05D006998 9.9e-09 64.7 101 42.6
Gohir.D13G096300 Gossypium hirsutum HOM05D007476 ORTHO05D006998 9.9e-09 64.7 175 40.0
Ciclev10012743m.g Citrus clementina HOM05D007476 ORTHO05D006998 3.8e-08 62.8 156 52.6
TAR375G0914 Trochodendron aralioides HOM05D000137 ORTHO05D000382 3.8e-08 62.8 65 55.4
ECA238G2167 Erigeron canadensis HOM05D007476 ORTHO05D006998 4.9e-08 62.4 121 38.0
Nitab4.5_0000754g0030 Nicotiana tabacum HOM05D007476 ORTHO05D006998 8.4e-08 61.6 105 41.0
Cc06_g03350 Coffea canephora HOM05D007476 ORTHO05D006998 1.1e-07 61.2 46 65.2
HanXRQChr07g0195971 Helianthus annuus HOM05D007476 ORTHO05D006998 1.1e-07 61.2 91 47.3
Oeu026075.1 Olea europaea HOM05D007476 ORTHO05D006998 1.1e-07 61.2 113 38.1
CiPaw.09G184800 Carya illinoinensis HOM05D007476 ORTHO05D006998 1.4e-07 60.8 130 37.7
QL07p045831 Quercus lobata HOM05D007476 ORTHO05D006998 1.4e-07 60.8 142 45.1
Hund12067 Selenicereus undatus HOM05D007476 ORTHO05D006998 3.2e-07 59.7 118 38.1
Ah.08g212030 Amaranthus hybridus HOM05D007476 ORTHO05D006998 5.4e-07 58.9 112 40.2
Nn2g12939 Nelumbo nucifera HOM05D007476 ORTHO05D006998 5.4e-07 58.9 49 61.2
Peaxi162Scf00597g00826 Petunia axillaris HOM05D007476 ORTHO05D006998 5.4e-07 58.9 110 46.4
COL.COLO4_10302 Corchorus olitorius HOM05D007476 ORTHO05D006998 9.3e-07 58.2 136 52.9
Eucgr.A01204 Eucalyptus grandis HOM05D007476 ORTHO05D006998 1.2e-06 57.8 129 58.1
FvH4_6g14930 Fragaria vesca HOM05D007476 ORTHO05D006998 1.6e-06 57.4 75 45.3
FAN02G2102 Fragaria x ananassa HOM05D007476 ORTHO05D006998 1.6e-06 57.4 75 45.3
FAN14G0122 Fragaria x ananassa HOM05D007476 ORTHO05D006998 1.6e-06 57.4 75 45.3
MD04G1111200 Malus domestica HOM05D007476 ORTHO05D006998 1.6e-06 57.4 87 55.2
Atru.chr8.2515 Acer truncatum HOM05D007476 ORTHO05D006998 2.7e-06 56.6 180 40.6
TWI53G1272 Tripterygium wilfordii HOM05D007476 ORTHO05D006998 3.5e-06 56.2 71 49.3
CSS0046323 Camellia sinensis var. sinensis HOM05D007476 ORTHO05D006998 4.6e-06 55.8 106 36.8
Gohir.D09G156000 Gossypium hirsutum HOM05D007476 ORTHO05D006998 4.6e-06 55.8 88 43.2
Sc20g0004220 Simmondsia chinensis HOM05D007476 ORTHO05D006998 4.6e-06 55.8 74 48.6
PGSC0003DMG400002015 Solanum tuberosum HOM05D007476 ORTHO05D006998 4.6e-06 55.8 121 46.3
Migut.L01648 Erythranthe guttata HOM05D020465 ORTHO05D006998 7.8e-06 55.1 104 36.5


User provided reference genes

Program Settings