Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR209910 Cardamine hirsuta HOM05D004402 ORTHO05D005314 2.1e-288 995.0 500 100.0
Carub.0006s0224 Capsella rubella HOM05D004402 ORTHO05D005314 1.9e-273 945.3 500 95.0
AL6G12780 Arabidopsis lyrata HOM05D004402 ORTHO05D005314 8.1e-272 939.9 500 94.6
Thhalv10013303m.g Eutrema salsugineum HOM05D004402 ORTHO05D005314 8.1e-272 939.9 508 92.9
A10p32580 Brassica napus HOM05D004402 ORTHO05D005314 1.8e-271 938.7 500 94.2
AT5G03430 Arabidopsis thaliana HOM05D004402 ORTHO05D005314 3.1e-271 937.9 500 94.6
BraA10t45293Z Brassica rapa HOM05D004402 ORTHO05D005314 9.0e-271 936.4 500 93.8
BcaC06g32061 Brassica carinata HOM05D004402 ORTHO05D005314 1.5e-270 935.6 501 93.8
BolC9t60074H Brassica oleracea HOM05D004402 ORTHO05D005314 1.5e-270 935.6 501 93.8
C09p73380 Brassica napus HOM05D004402 ORTHO05D005314 2.6e-270 934.9 501 94.0
BcaB01g05821 Brassica carinata HOM05D004402 ORTHO05D005314 1.3e-269 932.6 500 93.0
Sp6g39310 Schrenkiella parvula HOM05D004402 ORTHO05D005314 1.9e-268 928.7 498 93.4
C03p01510 Brassica napus HOM05D004402 ORTHO05D005314 4.2e-268 927.5 500 93.0
BcaC06g32058 Brassica carinata HOM05D004402 ORTHO05D005314 5.5e-268 927.2 500 93.0
BcaB01g05839 Brassica carinata HOM05D004402 ORTHO05D005314 7.1e-268 926.8 500 93.0
BolC3t12705H Brassica oleracea HOM05D004402 ORTHO05D005314 2.7e-267 924.9 500 93.0
A03p01170 Brassica napus HOM05D004402 ORTHO05D005314 1.3e-266 922.5 500 92.6
BraA02t04760Z Brassica rapa HOM05D004402 ORTHO05D005314 1.8e-266 922.2 504 92.3
BolC2t06097H Brassica oleracea HOM05D004402 ORTHO05D005314 2.4e-263 911.8 502 91.6
C02p01070 Brassica napus HOM05D004402 ORTHO05D005314 4.5e-262 907.5 502 91.2
Aa31LG1G21720 Aethionema arabicum HOM05D004402 ORTHO05D005314 6.7e-258 893.6 497 89.3
BraA03t09499Z Brassica rapa HOM05D004402 ORTHO05D005314 1.1e-255 886.3 474 94.1
THA.LOC104823232 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 5.0e-245 850.9 507 83.6
BcaB05g21840 Brassica carinata HOM05D004402 ORTHO05D005314 1.4e-244 849.4 495 86.9
THA.LOC104826918 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 1.4e-236 822.8 504 81.9
BcaC03g13007 Brassica carinata HOM05D004402 ORTHO05D005314 1.1e-233 813.1 445 91.9
Sabra06G0097300 Salix brachista HOM05D004402 ORTHO05D005314 1.8e-223 779.2 503 75.7
Atru.chr8.1786 Acer truncatum HOM05D004402 ORTHO05D005314 4.5e-222 774.6 507 76.9
Duzib093G2129 Durio zibethinus HOM05D004402 ORTHO05D005314 6.5e-221 770.8 509 74.7
Gorai.009G414300 Gossypium raimondii HOM05D004402 ORTHO05D005314 7.2e-220 767.3 509 75.0
Dinv35795 Davidia involucrata HOM05D004402 ORTHO05D005314 9.4e-220 766.9 512 74.4
QL07p043056 Quercus lobata HOM05D004402 ORTHO05D005314 2.1e-219 765.8 506 74.7
Thecc.05G068900 Theobroma cacao HOM05D004402 ORTHO05D005314 4.7e-219 764.6 509 73.7
Potri.006G123000 Populus trichocarpa HOM05D004402 ORTHO05D005314 1.8e-218 762.7 500 75.0
Ciclev10011527m.g Citrus clementina HOM05D004402 ORTHO05D005314 3.0e-218 761.9 506 75.7
Gohir.D04G110200 Gossypium hirsutum HOM05D004402 ORTHO05D005314 4.0e-218 761.5 509 74.7
Cfa017631 Carpinus fangiana HOM05D004402 ORTHO05D005314 2.8e-216 755.4 510 73.3
FvH4_6g16530 Fragaria vesca HOM05D004402 ORTHO05D005314 8.3e-216 753.8 508 74.0
GSVIVG01033653001 Vitis vinifera HOM05D004402 ORTHO05D005314 3.1e-215 751.9 505 74.1
CSS0044786 Camellia sinensis var. sinensis HOM05D004402 ORTHO05D005314 4.1e-215 751.5 517 72.7
RcHm_v2.0_Chr3g0470441 Rosa chinensis HOM05D004402 ORTHO05D005314 4.5e-214 748.0 508 74.2
COL.COLO4_09330 Corchorus olitorius HOM05D004402 ORTHO05D005314 5.9e-214 747.7 505 73.5
Manes.12G084800 Manihot esculenta HOM05D004402 ORTHO05D005314 1.3e-213 746.5 510 72.7
TAR633G1938 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.1e-212 743.4 511 72.6
Prupe.7G128300 Prunus persica HOM05D004402 ORTHO05D005314 3.3e-212 741.9 508 73.6
Lalb_Chr25g0288951 Lupinus albus HOM05D004402 ORTHO05D005314 9.5e-212 740.3 508 71.5
TWI74G0242 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 1.6e-211 739.6 509 73.5
Ca_08910_v3 Cicer arietinum L. HOM05D004402 ORTHO05D005314 3.6e-211 738.4 506 72.5
Lalb_Chr20g0112571 Lupinus albus HOM05D004402 ORTHO05D005314 4.7e-211 738.0 508 71.3
CiPaw.10G128900 Carya illinoinensis HOM05D004402 ORTHO05D005314 1.4e-210 736.5 505 72.7
Phvul.001G179700 Phaseolus vulgaris HOM05D004402 ORTHO05D005314 1.8e-210 736.1 507 71.4
DCAR_015004 Daucus carota HOM05D004402 ORTHO05D005314 3.4e-209 731.9 514 70.8
CANSAT80G1177 Cannabis sativa HOM05D004402 ORTHO05D005314 5.7e-209 731.1 507 72.0
Glyma.19G184800 Glycine max HOM05D004402 ORTHO05D005314 7.5e-209 730.7 509 71.1
Glyma.03G184200 Glycine max HOM05D004402 ORTHO05D005314 8.3e-208 727.2 509 70.3
Lj1g0000599 Lotus japonicus HOM05D004402 ORTHO05D005314 1.8e-207 726.1 509 71.1
Medtr7g102180 Medicago truncatula HOM05D004402 ORTHO05D005314 4.1e-207 724.9 505 70.5
ClCG10G020050 Citrullus lanatus HOM05D004402 ORTHO05D005314 7.0e-207 724.2 505 71.3
PGR004G2373 Punica granatum HOM05D004402 ORTHO05D005314 7.0e-207 724.2 498 71.7
CsaV3_3G036050 Cucumis sativus L. HOM05D004402 ORTHO05D005314 4.5e-206 721.5 504 70.6
Nn6g35264 Nelumbo nucifera HOM05D004402 ORTHO05D005314 4.5e-206 721.5 512 70.7
TWI77G0706 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 1.0e-205 720.3 506 71.3
vmacro01673 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 3.8e-205 718.4 548 66.6
Oeu041487.1 Olea europaea HOM05D004402 ORTHO05D005314 5.0e-205 718.0 511 70.1
Nitab4.5_0000578g0080 Nicotiana tabacum HOM05D004402 ORTHO05D005314 3.3e-204 715.3 514 69.5
Peaxi162Scf00311g01314 Petunia axillaris HOM05D004402 ORTHO05D005314 4.3e-204 714.9 510 70.0
Sopen10g033410 Solanum pennellii HOM05D004402 ORTHO05D005314 7.3e-204 714.1 513 68.8
DCAR_017670 Daucus carota HOM05D004402 ORTHO05D005314 1.2e-203 713.4 509 71.3
Migut.L01711 Erythranthe guttata HOM05D004402 ORTHO05D005314 6.1e-203 711.1 508 69.9
Sed0020729 Sechium edule HOM05D004402 ORTHO05D005314 1.4e-202 709.9 505 69.9
Cc06_g04350 Coffea canephora HOM05D004402 ORTHO05D005314 2.3e-202 709.1 512 68.6
COL.COLO4_26944 Corchorus olitorius HOM05D004402 ORTHO05D005314 4.0e-202 708.4 476 73.3
Sopen09g003130 Solanum pennellii HOM05D004402 ORTHO05D005314 6.8e-202 707.6 514 69.5
Solyc09g008310.3 Solanum lycopersicum HOM05D004402 ORTHO05D005314 2.0e-201 706.1 514 69.6
arahy.Tifrunner.gnm1.ann1.DYK8MJ Arachis hypogaea HOM05D004402 ORTHO05D005314 3.4e-201 705.3 547 65.8
TAR636G0918 Trochodendron aralioides HOM05D004402 ORTHO05D005314 5.8e-201 704.5 492 71.3
arahy.Tifrunner.gnm1.ann1.ZWC5L9 Arachis hypogaea HOM05D004402 ORTHO05D005314 1.3e-200 703.4 547 65.8
FAN14G0478 Fragaria x ananassa HOM05D004402 ORTHO05D005314 3.7e-200 701.8 508 70.5
MSTRG.10328 Avicennia marina HOM05D004402 ORTHO05D005314 8.3e-200 700.7 514 69.1
Sc20g0005590 Simmondsia chinensis HOM05D004402 ORTHO05D005314 8.3e-200 700.7 513 67.3
HanXRQChr14g0454821 Helianthus annuus HOM05D004402 ORTHO05D005314 1.9e-199 699.5 509 68.8
SalBow2G1223 Salvia bowleyana HOM05D004402 ORTHO05D005314 2.4e-199 699.1 499 70.1
FAN09G4748 Fragaria x ananassa HOM05D004402 ORTHO05D005314 4.1e-199 698.4 508 70.3
SalBow3G3127 Salvia bowleyana HOM05D004402 ORTHO05D005314 5.4e-199 698.0 499 70.1
PSO801G0054 Papaver somniferum HOM05D004402 ORTHO05D005314 2.0e-198 696.0 512 68.2
CAN.G488.15 Capsicum annuum HOM05D004402 ORTHO05D005314 6.0e-198 694.5 513 68.0
MD04G1091700 Malus domestica HOM05D004402 ORTHO05D005314 1.0e-197 693.7 474 72.6
Lj2C120T4 Lonicera japonica HOM05D004402 ORTHO05D005314 1.3e-197 693.3 474 74.5
MD12G1109700 Malus domestica HOM05D004402 ORTHO05D005314 2.5e-196 689.1 475 72.4
AUR62026916 Chenopodium quinoa HOM05D004402 ORTHO05D005314 3.3e-196 688.7 505 67.5
PSO339G5499 Papaver somniferum HOM05D004402 ORTHO05D005314 7.3e-196 687.6 513 67.6
vmacro07301 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 3.6e-195 685.3 601 60.6
ECA238G0572 Erigeron canadensis HOM05D004402 ORTHO05D005314 3.4e-193 678.7 502 67.7
Eucgr.K02925 Eucalyptus grandis HOM05D004402 ORTHO05D005314 4.4e-193 678.3 509 67.0
Solyc10g083960.2 Solanum lycopersicum HOM05D004402 ORTHO05D005314 1.7e-192 676.4 513 66.1
ATR0910G004 Amborella trichopoda HOM05D004402 ORTHO05D005314 2.9e-192 675.6 508 66.7
MELO3C009365.2 Cucumis melo HOM05D004402 ORTHO05D005314 1.1e-191 673.7 505 67.9
Dinv37323 Davidia involucrata HOM05D004402 ORTHO05D005314 2.4e-191 672.5 452 74.6
MBI17_g34762_MAGBIO Magnolia biondii HOM05D004402 ORTHO05D005314 2.4e-191 672.5 526 63.5
Nn2g13812 Nelumbo nucifera HOM05D004402 ORTHO05D005314 2.7e-190 669.1 513 66.9
FAN05G1679 Fragaria x ananassa HOM05D004402 ORTHO05D005314 3.0e-189 665.6 508 68.3
FAN05G2520 Fragaria x ananassa HOM05D004402 ORTHO05D005314 6.6e-189 664.5 508 68.1
ECA248G3038 Erigeron canadensis HOM05D004402 ORTHO05D005314 2.8e-187 659.1 496 65.3
VMungo1383G0058 Vigna mungo HOM05D004402 ORTHO05D005314 6.2e-187 657.9 459 70.4
FAN02G2572 Fragaria x ananassa HOM05D004402 ORTHO05D005314 3.1e-186 655.6 534 65.4
CDE10G0806 Ceratophyllum demersum HOM05D004402 ORTHO05D005314 5.2e-186 654.8 513 63.9
AUR62042064 Chenopodium quinoa HOM05D004402 ORTHO05D005314 8.9e-186 654.1 505 65.1
Lsat_1_v5_gn_1_51600 Lactuca sativa HOM05D004402 ORTHO05D005314 4.4e-185 651.7 492 67.1
Rhsim03G0090600 Rhododendron simsii HOM05D004402 ORTHO05D005314 9.9e-185 650.6 570 60.9
EL10Ac7g16646 Beta vulgaris HOM05D004402 ORTHO05D005314 1.9e-183 646.4 582 58.8
Psat3g041880 Pisum sativum HOM05D004402 ORTHO05D005314 2.4e-183 646.0 445 71.9
Nitab4.5_0000814g0100 Nicotiana tabacum HOM05D004402 ORTHO05D005314 2.1e-182 642.9 506 65.4
Zm00001eb333440 Zea mays HOM05D004402 ORTHO05D005314 2.7e-182 642.5 501 63.3
Nitab4.5_0000063g0160 Nicotiana tabacum HOM05D004402 ORTHO05D005314 6.0e-182 641.3 505 65.5
Oeu005028.1 Olea europaea HOM05D004402 ORTHO05D005314 2.3e-181 639.4 528 62.9
SGA_v2.0_scaffold75G24834 Striga asiatica HOM05D004402 ORTHO05D005314 2.3e-181 639.4 507 65.7
Nitab4.5_0010955g0010 Nicotiana tabacum HOM05D004402 ORTHO05D005314 7.3e-180 634.4 528 63.6
unitig_60.g25815 Utricularia gibba HOM05D004402 ORTHO05D005314 8.1e-179 630.9 506 62.8
Ah.08g211550 Amaranthus hybridus HOM05D004402 ORTHO05D005314 5.8e-177 624.8 510 62.2
Peaxi162Scf00722g00015 Petunia axillaris HOM05D004402 ORTHO05D005314 1.3e-176 623.6 514 63.6
HPP92_025807 Vanilla planifolia HOM05D004402 ORTHO05D005314 5.4e-175 618.2 510 62.5
Actinidia28911 Actinidia chinensis HOM05D004402 ORTHO05D005314 2.4e-170 602.8 472 65.5
Migut.J00646 Erythranthe guttata HOM05D004402 ORTHO05D005314 9.0e-162 574.3 399 70.9
CAN.G900.21 Capsicum annuum HOM05D004402 ORTHO05D005314 1.1e-159 567.4 404 69.6
Mapoly0054s0056 Marchantia polymorpha HOM05D004402 ORTHO05D005314 5.3e-154 548.5 541 53.2
AagrBONN_evm.TU.Sc2ySwM_362.2690 Anthoceros agrestis HOM05D004402 ORTHO05D005314 2.1e-147 526.6 534 52.4
Haze_20522 Corylus avellana HOM05D004402 ORTHO05D005314 1.5e-145 520.4 492 57.7
Hund20335 Selenicereus undatus HOM05D004402 ORTHO05D005314 1.3e-144 517.3 663 46.5
SMO146G0130 Selaginella moellendorffii HOM05D004402 ORTHO05D005314 3.5e-142 509.2 416 61.5
SHI12325 Sapria himalayana HOM05D004402 ORTHO05D005314 4.2e-135 485.7 453 58.7
SGA_v2.0_scaffold224G42938 Striga asiatica HOM05D004402 ORTHO05D005314 1.1e-130 471.1 437 57.4
TPR.G32815 Trifolium pratense HOM05D004402 ORTHO05D005314 9.4e-127 458.0 337 68.2
Gohir.A04G071600 Gossypium hirsutum HOM05D004402 ORTHO05D005314 1.5e-116 424.1 270 78.9
PGSC0003DMG401028184 Solanum tuberosum HOM05D004402 ORTHO05D005314 2.0e-113 413.7 273 74.0
Aqoxy3G01670 Aquilegia oxysepala HOM05D004402 ORTHO05D005314 3.6e-102 376.3 279 68.8
SEGI_14784 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 6.8e-85 318.9 244 67.2
Zm00001eb128460 Zea mays HOM05D004402 ORTHO05D005314 1.1e-82 311.6 249 61.8
Gohir.A04G071700 Gossypium hirsutum HOM05D004402 ORTHO05D005314 1.2e-81 308.1 208 71.2
Zm00001eb127890 Zea mays HOM05D004402 ORTHO05D005314 7.3e-79 298.9 261 59.4
HanXRQChr07g0194721 Helianthus annuus HOM05D004402 ORTHO05D005314 8.6e-72 275.4 495 39.2
Hma1.2p1_0828F.1_g225130 Hydrangea macrophylla HOM05D004402 ORTHO05D005314 1.2e-70 271.6 217 63.1
Cre13.g592500 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D005314 5.6e-63 246.1 574 31.4
PRCOL_00001257 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 1.9e-58 231.1 495 33.1
Os01g0259600 Oryza sativa ssp. japonica HOM05D004402 ORTHO05D005314 3.2e-42 177.2 138 64.5
TAR636G0069 Trochodendron aralioides HOM05D004402 ORTHO05D005314 3.9e-40 170.2 173 53.2
VMungo1383G2351 Vigna mungo HOM05D004402 ORTHO05D005314 1.6e-38 164.9 106 76.4
PRCOL_00006213 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 5.8e-36 156.4 184 43.5
SalBow3G0082 Salvia bowleyana HOM05D004402 ORTHO05D005314 2.1e-30 137.9 249 39.4
SalBow3G2408 Salvia bowleyana HOM05D004402 ORTHO05D005314 6.3e-30 136.3 249 39.0
TAR636G0130 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.4e-29 135.2 121 62.0
TPR.G11110 Trifolium pratense HOM05D004402 ORTHO05D005314 6.5e-27 126.3 68 85.3
PGSC0003DMG400003892 Solanum tuberosum HOM05D004402 ORTHO05D005314 1.1e-26 125.6 114 50.9
SalBow3G1023 Salvia bowleyana HOM05D004402 ORTHO05D005314 4.3e-23 113.6 63 85.7
Cfa022272 Carpinus fangiana HOM05D004402 ORTHO05D005314 5.5e-18 96.7 183 28.4
CBR_g4033 Chara braunii HOM05D004402 ORTHO05D005314 4.1e-13 80.5 114 44.7
HanXRQChr13g0396631 Helianthus annuus HOM05D004402 ORTHO05D005314 7.7e-12 76.3 48 70.8
CAN.G900.20 Capsicum annuum HOM05D004402 ORTHO05D005314 5.0e-11 73.6 61 63.9
Cfa025539 Carpinus fangiana HOM05D003439 ORTHO05D004062 6.1e-09 66.6 127 30.7
SEGI_37303 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 3.9e-08 63.9 110 36.4
Cre01.g026650 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D007141 6.7e-08 63.2 147 31.3
Lsat_1_v5_gn_6_17200 Lactuca sativa HOM05D004402 ORTHO05D005314 6.7e-08 63.2 80 47.5
TAR636G1582 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.1e-07 62.4 36 80.6
ECA233G2956 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.5e-07 62.0 105 41.0
CBR_g4032 Chara braunii HOM05D004402 ORTHO05D043925 3.3e-07 60.8 36 75.0


User provided reference genes

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