Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR208860 Cardamine hirsuta HOM05D001312 ORTHO05D008018 2.7e-49 198.4 101 100.0
AL6G13310 Arabidopsis lyrata HOM05D001312 ORTHO05D008018 4.9e-43 177.6 98 91.8
Thhalv10013569m.g Eutrema salsugineum HOM05D001312 ORTHO05D008018 8.4e-43 176.8 98 90.8
AT5G03770 Arabidopsis thaliana HOM05D001312 ORTHO05D008018 1.9e-42 175.6 98 90.8
BcaC06g32083 Brassica carinata HOM05D001312 ORTHO05D008018 9.3e-42 173.3 98 87.8
Sp6g38960 Schrenkiella parvula HOM05D001312 ORTHO05D008018 2.7e-41 171.8 98 87.8
A10p32330 Brassica napus HOM05D001312 ORTHO05D008018 2.3e-40 168.7 98 85.7
BraA10t45274Z Brassica rapa HOM05D001312 ORTHO05D008018 2.3e-40 168.7 98 85.7
Aa31LG1G21490 Aethionema arabicum HOM05D001312 ORTHO05D008018 3.0e-40 168.3 98 82.7
C09p73160 Brassica napus HOM05D001312 ORTHO05D008018 6.7e-40 167.2 98 84.7
BolC9t60051H Brassica oleracea HOM05D001312 ORTHO05D008018 6.7e-40 167.2 98 84.7
Carub.0006s0268 Capsella rubella HOM05D001312 ORTHO05D008018 1.1e-39 166.4 98 85.7
Haze_19515 Corylus avellana HOM05D001312 ORTHO05D008018 1.3e-32 142.9 98 71.4
CANSAT80G2114 Cannabis sativa HOM05D001312 ORTHO05D008018 1.8e-32 142.5 98 72.4
Sed0012062 Sechium edule HOM05D001312 ORTHO05D008018 3.9e-32 141.4 98 69.4
Gohir.A04G066728 Gossypium hirsutum HOM05D001312 ORTHO05D008018 1.5e-31 139.4 98 69.4
CsaV3_6G040350 Cucumis sativus L. HOM05D001312 ORTHO05D008018 2.5e-31 138.7 98 68.4
Gorai.009G409200 Gossypium raimondii HOM05D001312 ORTHO05D008018 2.5e-31 138.7 98 69.4
THA.LOC104816378 Tarenaya hassleriana HOM05D001312 ORTHO05D008018 2.5e-31 138.7 99 69.7
ClCG04G009690 Citrullus lanatus HOM05D001312 ORTHO05D008018 4.3e-31 137.9 101 68.3
Potri.016G095900 Populus trichocarpa HOM05D001312 ORTHO05D008018 5.7e-31 137.5 98 70.4
Gohir.D04G105500 Gossypium hirsutum HOM05D001312 ORTHO05D008018 7.4e-31 137.1 98 68.4
Psat6g076240 Pisum sativum HOM05D001312 ORTHO05D008018 7.4e-31 137.1 98 68.4
arahy.Tifrunner.gnm1.ann1.42C0B0 Arachis hypogaea HOM05D001312 ORTHO05D008018 9.7e-31 136.7 97 69.1
arahy.Tifrunner.gnm1.ann1.C1UQYX Arachis hypogaea HOM05D001312 ORTHO05D008018 9.7e-31 136.7 97 69.1
MELO3C024510.2 Cucumis melo HOM05D001312 ORTHO05D008018 9.7e-31 136.7 98 68.4
Thecc.05G079000 Theobroma cacao HOM05D001312 ORTHO05D008018 9.7e-31 136.7 97 70.1
TPR.G5684 Trifolium pratense HOM05D001312 ORTHO05D008018 9.7e-31 136.7 98 67.3
vmacro07336 Vaccinium macrocarpon HOM05D001312 ORTHO05D008018 1.6e-30 136.0 98 71.4
CiPaw.10G004200 Carya illinoinensis HOM05D001312 ORTHO05D008018 2.2e-30 135.6 98 68.4
Aqoxy1G00967 Aquilegia oxysepala HOM05D001312 ORTHO05D008018 4.8e-30 134.4 97 70.1
COL.COLO4_22294 Corchorus olitorius HOM05D001312 ORTHO05D008018 6.3e-30 134.0 101 68.3
TWI53G1380 Tripterygium wilfordii HOM05D001312 ORTHO05D008018 6.3e-30 134.0 98 68.4
FvH4_6g17520 Fragaria vesca HOM05D001312 ORTHO05D008018 8.2e-30 133.7 98 68.4
FAN05G0775 Fragaria x ananassa HOM05D001312 ORTHO05D008018 8.2e-30 133.7 98 68.4
FAN05G3053 Fragaria x ananassa HOM05D001312 ORTHO05D008018 8.2e-30 133.7 98 68.4
FAN14G3191 Fragaria x ananassa HOM05D001312 ORTHO05D008018 8.2e-30 133.7 98 68.4
Prupe.7G120300 Prunus persica HOM05D001312 ORTHO05D008018 8.2e-30 133.7 98 66.3
Rhsim03G0083100 Rhododendron simsii HOM05D001312 ORTHO05D008018 8.2e-30 133.7 98 69.4
MD14G1093900 Malus domestica HOM05D001312 ORTHO05D008018 1.8e-29 132.5 98 67.3
TAR633G1314 Trochodendron aralioides HOM05D001312 ORTHO05D001832 1.8e-29 132.5 98 68.4
Cpa.g.sc5.99 Carica papaya HOM05D001312 ORTHO05D008018 2.4e-29 132.1 97 63.9
Glyma.10G065300 Glycine max HOM05D001312 ORTHO05D008018 2.4e-29 132.1 97 68.0
RcHm_v2.0_Chr3g0471781 Rosa chinensis HOM05D001312 ORTHO05D008018 2.4e-29 132.1 98 66.3
GSVIVG01033751001 Vitis vinifera HOM05D001312 ORTHO05D008018 2.4e-29 132.1 98 68.4
FAN09G2766 Fragaria x ananassa HOM05D001312 ORTHO05D008018 3.1e-29 131.7 98 67.3
CSS0009438 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 5.3e-29 131.0 92 71.7
CSS0027895 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 6.9e-29 130.6 92 71.7
Eucgr.A01566 Eucalyptus grandis HOM05D001312 ORTHO05D008018 6.9e-29 130.6 98 65.3
Peaxi162Scf00110g01214 Petunia axillaris HOM05D001312 ORTHO05D008018 6.9e-29 130.6 97 68.0
Dinv35859 Davidia involucrata HOM05D001312 ORTHO05D008018 1.2e-28 129.8 98 66.3
CiPaw.09G007400 Carya illinoinensis HOM05D001312 ORTHO05D008018 2.0e-28 129.0 97 68.0
Ca_11617_v3 Cicer arietinum L. HOM05D001312 ORTHO05D008018 2.0e-28 129.0 98 64.3
Lj5g0006635 Lotus japonicus HOM05D001312 ORTHO05D008018 2.0e-28 129.0 98 65.3
HanXRQChr01g0028401 Helianthus annuus HOM05D001312 ORTHO05D008018 3.4e-28 128.3 97 62.9
Hma1.2p1_0651F.1_g195720 Hydrangea macrophylla HOM05D001312 ORTHO05D008018 3.4e-28 128.3 92 70.7
VMungo0720G0477 Vigna mungo HOM05D001312 ORTHO05D008018 3.4e-28 128.3 97 67.0
Medtr1g061560 Medicago truncatula HOM05D001312 ORTHO05D008018 4.5e-28 127.9 98 62.2
Nitab4.5_0000132g0320 Nicotiana tabacum HOM05D001312 ORTHO05D008018 7.7e-28 127.1 97 66.0
Sopen10g033180 Solanum pennellii HOM05D001312 ORTHO05D008018 1.0e-27 126.7 97 64.9
PSO339G3022 Papaver somniferum HOM05D001312 ORTHO05D008018 1.3e-27 126.3 97 64.9
Phvul.007G224100 Phaseolus vulgaris HOM05D001312 ORTHO05D008018 1.3e-27 126.3 97 66.0
Solyc10g083710.2 Solanum lycopersicum HOM05D001312 ORTHO05D008018 1.7e-27 125.9 97 63.9
Glyma.13G150200 Glycine max HOM05D001312 ORTHO05D008018 5.0e-27 124.4 97 62.9
PGSC0003DMG400028176 Solanum tuberosum HOM05D001312 ORTHO05D008018 5.0e-27 124.4 97 63.9
ECA248G1880 Erigeron canadensis HOM05D001312 ORTHO05D008018 6.5e-27 124.0 97 62.9
Migut.J00495 Erythranthe guttata HOM05D001312 ORTHO05D008018 1.4e-26 122.9 98 65.3
Lsat_1_v5_gn_1_50640 Lactuca sativa HOM05D001312 ORTHO05D008018 1.4e-26 122.9 97 63.9
SEGI_32755 Sequoiadendron giganteum HOM05D001312 ORTHO05D008018 1.9e-26 122.5 97 58.8
Cc06_g05050 Coffea canephora HOM05D001312 ORTHO05D008018 5.5e-26 120.9 97 64.9
Hund20444 Selenicereus undatus HOM05D001312 ORTHO05D008018 5.5e-26 120.9 97 63.9
Sc02g0001220 Simmondsia chinensis HOM05D001312 ORTHO05D008018 5.5e-26 120.9 98 60.2
Manes.08G018900 Manihot esculenta HOM05D001312 ORTHO05D008018 7.2e-26 120.6 97 63.9
Nitab4.5_0004490g0050 Nicotiana tabacum HOM05D001312 ORTHO05D008018 7.2e-26 120.6 91 67.0
Sabra16G0101200 Salix brachista HOM05D001312 ORTHO05D008018 4.6e-25 117.9 137 51.1
Ah.15g091190 Amaranthus hybridus HOM05D001312 ORTHO05D008018 1.4e-24 116.3 98 59.2
EL10Ac7g16768 Beta vulgaris HOM05D001312 ORTHO05D008018 1.8e-24 115.9 97 58.8
SalBow3G2703 Salvia bowleyana HOM05D001312 ORTHO05D008018 1.8e-24 115.9 98 61.2
ATR0820G168 Amborella trichopoda HOM05D001312 ORTHO05D008018 2.3e-24 115.5 97 60.8
MSTRG.5801 Avicennia marina HOM05D001312 ORTHO05D008018 3.0e-24 115.2 98 61.2
Actinidia39872 Actinidia chinensis HOM05D001312 ORTHO05D008018 1.1e-23 113.2 101 61.4
Lj3A1005G38 Lonicera japonica HOM05D001312 ORTHO05D008018 1.5e-23 112.8 111 57.7
unitig_744.g24689 Utricularia gibba HOM05D001312 ORTHO05D008018 1.5e-23 112.8 98 60.2
DCAR_015029 Daucus carota HOM05D001312 ORTHO05D008018 4.3e-23 111.3 91 60.4
PSO063G2793 Papaver somniferum HOM05D001312 ORTHO05D008018 7.4e-23 110.5 127 49.6
Zm00001eb147410 Zea mays HOM05D001312 ORTHO05D008018 4.8e-22 107.8 97 57.7
SGA_v2.0_scaffold40G15429 Striga asiatica HOM05D001312 ORTHO05D008018 2.4e-21 105.5 98 57.1
AagrBONN_evm.TU.Sc2ySwM_344.3661 Anthoceros agrestis HOM05D001312 ORTHO05D008018 3.1e-21 105.1 97 53.6
Lalb_Chr21g0315421 Lupinus albus HOM05D001312 ORTHO05D008018 3.1e-21 105.1 75 72.0
FAN02G1263 Fragaria x ananassa HOM05D001312 ORTHO05D008018 2.0e-20 102.4 98 58.2
Nn6g35083 Nelumbo nucifera HOM05D001312 ORTHO05D008018 2.0e-20 102.4 72 69.4
MBI01_g48091_MAGBIO Magnolia biondii HOM05D001312 ORTHO05D008018 1.3e-19 99.8 71 70.4
Oeu039841.2 Olea europaea HOM05D001312 ORTHO05D008018 1.3e-19 99.8 131 47.3
CBR_g874 Chara braunii HOM05D001312 ORTHO05D008018 1.7e-19 99.4 98 49.0
QL07p040881 Quercus lobata HOM05D001312 ORTHO05D008018 3.8e-19 98.2 171 39.2
Pp3c21_8090 Physcomitrium patens HOM05D001312 ORTHO05D008018 6.5e-19 97.4 89 53.9
Atru.BG.216.p Acer truncatum HOM05D001312 ORTHO05D008018 1.1e-18 96.7 104 51.0
SMO364G0357 Selaginella moellendorffii HOM05D001312 ORTHO05D008018 1.1e-18 96.7 92 52.2
Ciclev10013092m.g Citrus clementina HOM05D001312 ORTHO05D008018 3.6e-17 91.7 51 80.4
Mapoly0002s0209 Marchantia polymorpha HOM05D001312 ORTHO05D008018 1.8e-16 89.4 93 50.5
Atru.chr8.1664 Acer truncatum HOM05D001312 ORTHO05D008018 1.2e-09 66.6 58 58.6
AUR62037894 Chenopodium quinoa HOM05D001312 ORTHO05D008018 3.6e-09 65.1 58 55.2
AUR62033601 Chenopodium quinoa HOM05D001312 ORTHO05D008018 6.1e-09 64.3 58 53.4
CARHR209530 Cardamine hirsuta HOM05D001312 ORTHO05D008018 2.2e-06 55.8 28 92.9


User provided reference genes

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