Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR207930 Cardamine hirsuta HOM05D006817 ORTHO05D008603 2.0e-195 685.6 368 100.0
Thhalv10013352m.g Eutrema salsugineum HOM05D006817 ORTHO05D008603 2.5e-177 625.5 372 91.1
A10p30880 Brassica napus HOM05D006817 ORTHO05D008603 5.0e-170 601.3 369 89.7
BcaC06g32240 Brassica carinata HOM05D006817 ORTHO05D008603 1.1e-169 600.1 369 89.2
BraA10t45133Z Brassica rapa HOM05D006817 ORTHO05D008603 3.3e-169 598.6 376 88.0
Sp6g37510 Schrenkiella parvula HOM05D006817 ORTHO05D008603 1.2e-168 596.7 376 88.0
C09p71390 Brassica napus HOM05D006817 ORTHO05D008603 3.6e-168 595.1 369 88.9
BolC9t59902H Brassica oleracea HOM05D006817 ORTHO05D008603 1.5e-166 589.7 374 86.4
AT5G05310 Arabidopsis thaliana HOM05D006817 ORTHO05D008603 1.3e-157 560.1 351 88.9
THA.LOC104816518 Tarenaya hassleriana HOM05D006817 ORTHO05D008603 1.4e-156 556.6 368 81.0
Aa31LG11G6330 Aethionema arabicum HOM05D006817 ORTHO05D008603 2.8e-152 542.3 366 83.1
Thecc.10G176900 Theobroma cacao HOM05D006817 ORTHO05D008603 2.5e-137 492.7 377 68.7
Gohir.A10G180300 Gossypium hirsutum HOM05D006817 ORTHO05D008603 1.1e-135 487.3 358 69.3
Gorai.011G210100 Gossypium raimondii HOM05D006817 ORTHO05D008603 3.1e-135 485.7 358 69.6
Potri.019G048700 Populus trichocarpa HOM05D006817 ORTHO05D008603 3.1e-135 485.7 358 72.3
Ciclev10031264m.g Citrus clementina HOM05D006817 ORTHO05D008603 6.9e-135 484.6 377 69.0
Migut.F00593 Erythranthe guttata HOM05D006817 ORTHO05D008603 9.0e-135 484.2 357 71.1
TAR623G0065 Trochodendron aralioides HOM05D006817 ORTHO05D008603 2.6e-134 482.6 380 69.2
GSVIVG01032704001 Vitis vinifera HOM05D006817 ORTHO05D008603 9.9e-134 480.7 376 68.4
CANSAT56G1261 Cannabis sativa HOM05D006817 ORTHO05D008603 1.9e-132 476.5 374 66.8
Nn2g10348 Nelumbo nucifera HOM05D006817 ORTHO05D008603 1.9e-132 476.5 377 67.1
Actinidia00992 Actinidia chinensis HOM05D006817 ORTHO05D008603 2.4e-132 476.1 354 70.3
CSS0030257 Camellia sinensis var. sinensis HOM05D006817 ORTHO05D008603 5.5e-132 474.9 349 71.1
TWI09G1614 Tripterygium wilfordii HOM05D006817 ORTHO05D008603 9.3e-132 474.2 377 67.6
arahy.Tifrunner.gnm1.ann1.6QBV89 Arachis hypogaea HOM05D006817 ORTHO05D008603 1.0e-130 470.7 369 66.9
PGR044G0301 Punica granatum HOM05D006817 ORTHO05D008603 1.0e-130 470.7 380 66.8
arahy.Tifrunner.gnm1.ann1.6ZT9VY Arachis hypogaea HOM05D006817 ORTHO05D008603 1.3e-130 470.3 369 66.9
Peaxi162Scf00739g00017 Petunia axillaris HOM05D006817 ORTHO05D008603 6.7e-130 468.0 352 69.3
Prupe.2G261900 Prunus persica HOM05D006817 ORTHO05D008603 9.6e-129 464.2 357 70.3
ClCG07G004850 Citrullus lanatus HOM05D006817 ORTHO05D008603 1.6e-128 463.4 372 68.5
Sopen06g015650 Solanum pennellii HOM05D006817 ORTHO05D008603 3.7e-128 462.2 348 68.1
Nitab4.5_0011715g0010 Nicotiana tabacum HOM05D006817 ORTHO05D008603 4.8e-128 461.8 352 68.2
Solyc06g050210.3 Solanum lycopersicum HOM05D006817 ORTHO05D008603 4.8e-128 461.8 347 68.3
CAN.G169.4 Capsicum annuum HOM05D006817 ORTHO05D008603 1.1e-127 460.7 351 67.2
Lalb_Chr22g0360921 Lupinus albus HOM05D006817 ORTHO05D008603 1.8e-127 459.9 374 65.5
Atru.chr12.157 Acer truncatum HOM05D006817 ORTHO05D008603 3.1e-127 459.1 378 66.1
CsaV3_5G010750 Cucumis sativus L. HOM05D006817 ORTHO05D008603 4.0e-127 458.8 372 67.2
Gohir.D10G187300 Gossypium hirsutum HOM05D006817 ORTHO05D008603 6.9e-127 458.0 358 66.2
Psat6g035880 Pisum sativum HOM05D006817 ORTHO05D008603 6.9e-127 458.0 372 64.8
Aqoxy4G02362 Aquilegia oxysepala HOM05D006817 ORTHO05D008603 9.0e-127 457.6 350 69.4
Glyma.19G067100 Glycine max HOM05D006817 ORTHO05D008603 9.0e-127 457.6 370 66.2
MELO3C020113.2 Cucumis melo HOM05D006817 ORTHO05D008603 1.2e-126 457.2 375 67.5
Cc02_g05530 Coffea canephora HOM05D006817 ORTHO05D008603 1.5e-126 456.8 376 66.5
MD01G1164100 Malus domestica HOM05D006817 ORTHO05D008603 1.5e-126 456.8 363 67.5
Eucgr.J00131 Eucalyptus grandis HOM05D006817 ORTHO05D008603 2.0e-126 456.4 346 70.8
Sed0020006 Sechium edule HOM05D006817 ORTHO05D008603 3.4e-126 455.7 366 66.9
TPR.G24539 Trifolium pratense HOM05D006817 ORTHO05D008603 7.6e-126 454.5 372 64.2
Rhsim09G0184300 Rhododendron simsii HOM05D006817 ORTHO05D008603 2.9e-125 452.6 364 67.3
MSTRG.27274 Avicennia marina HOM05D006817 ORTHO05D008603 4.9e-125 451.8 370 64.6
Lj5g0023407 Lotus japonicus HOM05D006817 ORTHO05D008603 4.9e-125 451.8 364 64.6
Phvul.001G074700 Phaseolus vulgaris HOM05D006817 ORTHO05D008603 4.9e-125 451.8 372 65.6
Oeu036532.1 Olea europaea HOM05D006817 ORTHO05D008603 7.1e-124 448.0 350 67.4
ECA232G4264 Erigeron canadensis HOM05D006817 ORTHO05D008603 1.6e-123 446.8 373 63.8
PSO170G5674 Papaver somniferum HOM05D006817 ORTHO05D008603 2.1e-123 446.4 356 66.3
Medtr1g007630 Medicago truncatula HOM05D006817 ORTHO05D008603 2.7e-123 446.0 372 63.7
Carub.0006s0424 Capsella rubella HOM05D006817 ORTHO05D008603 3.5e-123 445.7 283 88.3
CDE04G2280 Ceratophyllum demersum HOM05D006817 ORTHO05D008603 1.0e-122 444.1 356 68.3
Lsat_1_v5_gn_9_59361 Lactuca sativa HOM05D006817 ORTHO05D008603 1.8e-122 443.4 360 65.8
FvH4_7g25670 Fragaria vesca HOM05D006817 ORTHO05D008603 6.7e-122 441.4 384 62.0
EL10Ac2g04256 Beta vulgaris HOM05D006817 ORTHO05D008603 3.3e-121 439.1 374 63.1
vmacro09974 Vaccinium macrocarpon HOM05D006817 ORTHO05D008603 5.7e-121 438.3 367 65.4
COL.COLO4_10038 Corchorus olitorius HOM05D006817 ORTHO05D008603 7.4e-121 438.0 354 65.3
Cpa.g.sc19.86 Carica papaya HOM05D006817 ORTHO05D008603 6.3e-120 434.9 371 65.0
ATR0681G057 Amborella trichopoda HOM05D006817 ORTHO05D008603 1.8e-119 433.3 356 65.7
Zm00001eb406320 Zea mays HOM05D006817 ORTHO05D008603 1.8e-119 433.3 359 65.2
HPP92_019064 Vanilla planifolia HOM05D006817 ORTHO05D008603 3.1e-119 432.6 350 65.7
MBI15_g27349_MAGBIO Magnolia biondii HOM05D006817 ORTHO05D008603 2.6e-118 429.5 446 57.4
Os12g0112300 Oryza sativa ssp. japonica HOM05D006817 ORTHO05D008603 3.8e-117 425.6 368 62.5
Sc11g0005730 Simmondsia chinensis HOM05D006817 ORTHO05D008603 5.5e-116 421.8 369 62.1
Ah.16g104230 Amaranthus hybridus HOM05D006817 ORTHO05D008603 7.2e-116 421.4 396 59.1
DCAR_014588 Daucus carota HOM05D006817 ORTHO05D008603 2.1e-115 419.9 358 63.4
AUR62003430 Chenopodium quinoa HOM05D006817 ORTHO05D008603 1.8e-114 416.8 381 61.2
HanXRQChr15g0493791 Helianthus annuus HOM05D006817 ORTHO05D008603 6.7e-114 414.8 355 63.9
HanXRQChr08g0222561 Helianthus annuus HOM05D006817 ORTHO05D008603 1.9e-113 413.3 343 65.0
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 2.2e-112 409.8 325 69.5
AUR62012358 Chenopodium quinoa HOM05D006817 ORTHO05D008603 1.2e-110 404.1 339 64.9
QL08p064576 Quercus lobata HOM05D006817 ORTHO05D008603 3.8e-109 399.1 314 68.5
Haze_17339 Corylus avellana HOM05D006817 ORTHO05D008603 1.4e-108 397.1 313 69.0
PSO017G6024 Papaver somniferum HOM05D006817 ORTHO05D008603 2.5e-108 396.4 313 67.1
SGA_v2.0_scaffold44G16643 Striga asiatica HOM05D006817 ORTHO05D008603 3.2e-108 396.0 360 60.3
Manes.10G004900 Manihot esculenta HOM05D006817 ORTHO05D008603 1.2e-107 394.0 359 62.1
Cfa001223 Carpinus fangiana HOM05D006817 ORTHO05D008603 4.7e-107 392.1 313 68.7
FAN03G2834 Fragaria x ananassa HOM05D006817 ORTHO05D008603 3.7e-104 382.5 410 54.4
Lj8A57G58 Lonicera japonica HOM05D006817 ORTHO05D008603 6.3e-104 381.7 293 69.3
Sabra19G0058300 Salix brachista HOM05D000055 ORTHO05D000057 7.7e-102 374.8 382 58.1
FAN10G2384 Fragaria x ananassa HOM05D006817 ORTHO05D008603 4.2e-100 369.0 285 67.4
FAN01G1353 Fragaria x ananassa HOM05D006817 ORTHO05D008603 1.2e-99 367.5 311 63.3
CiPaw.02G198400 Carya illinoinensis HOM05D006817 ORTHO05D008603 1.5e-89 334.0 259 68.7
unitig_46.g18743 Utricularia gibba HOM05D006817 ORTHO05D008603 1.9e-84 317.0 345 53.6
AUR62031486 Chenopodium quinoa HOM05D006817 ORTHO05D008603 7.2e-76 288.5 320 54.7
Nitab4.5_0000109g0530 Nicotiana tabacum HOM05D006817 ORTHO05D008603 8.3e-72 275.0 233 63.5
MD07G1231900 Malus domestica HOM05D006817 ORTHO05D008603 3.5e-70 269.6 240 63.8
SEGI_05100 Sequoiadendron giganteum HOM05D006817 ORTHO05D008603 1.8e-66 257.3 245 57.1
Pp3c22_2490 Physcomitrium patens HOM05D006817 ORTHO05D008603 1.3e-64 251.1 378 42.6
VMungo0647G0650 Vigna mungo HOM05D006817 ORTHO05D008603 2.3e-58 230.3 211 60.7
RcHm_v2.0_Chr1g0371881 Rosa chinensis HOM05D006817 ORTHO05D008603 1.5e-57 227.6 170 69.4
Ca_12776_v3 Cicer arietinum L. HOM05D006817 ORTHO05D008603 1.9e-55 220.7 195 61.0
MSTRG.24128 Avicennia marina HOM05D006817 ORTHO05D008603 1.5e-52 211.1 153 70.6
MD07G1231800 Malus domestica HOM05D006817 ORTHO05D008603 2.7e-46 190.3 139 71.2
QL10p038395 Quercus lobata HOM05D006817 ORTHO05D008603 1.3e-40 171.4 132 68.2
Oeu020109.1 Olea europaea HOM05D006817 ORTHO05D008603 4.9e-40 169.5 135 64.4
QL05p063879 Quercus lobata HOM05D006817 ORTHO05D008603 1.2e-38 164.9 132 66.7
RcHm_v2.0_Chr1g0371891 Rosa chinensis HOM05D006817 ORTHO05D008603 1.0e-37 161.8 134 63.4
SEGI_41528 Sequoiadendron giganteum HOM05D006817 ORTHO05D008603 2.3e-29 134.0 105 65.7
QL03p030054 Quercus lobata HOM05D006817 ORTHO05D008603 1.9e-28 131.0 92 75.0
QL06p040335 Quercus lobata HOM05D006817 ORTHO05D008603 9.6e-28 128.6 92 73.9
VMungo0647G0362 Vigna mungo HOM05D006817 ORTHO05D008603 1.4e-26 124.8 124 55.6
Cre08.g361000 Chlamydomonas reinhardtii HOM05D006817 ORTHO05D008603 6.9e-26 122.5 348 32.2
QL09p047975 Quercus lobata HOM05D000176 ORTHO05D000106 1.5e-25 121.3 92 70.7
Hund15836 Selenicereus undatus HOM05D006817 ORTHO05D008603 4.9e-24 116.3 72 83.3
MD05G1328700 Malus domestica HOM05D006817 ORTHO05D008603 1.0e-21 108.6 108 55.6
QL10p065865 Quercus lobata HOM05D006817 ORTHO05D008603 4.8e-19 99.8 73 72.6
QL08p064573 Quercus lobata HOM05D006817 ORTHO05D008603 1.2e-17 95.1 68 67.6
Aa31LG11G6180 Aethionema arabicum HOM05D006817 ORTHO05D058891 7.9e-06 55.8 44 65.9


User provided reference genes

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