Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 0.0e+00 1421.0 686 100.0
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 0.0e+00 1238.4 683 86.8
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 0.0e+00 1234.9 680 87.1
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 0.0e+00 1227.2 688 85.5
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 0.0e+00 1212.6 675 85.8
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 0.0e+00 1205.7 675 85.8
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 0.0e+00 1176.0 682 82.4
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 0.0e+00 1171.0 682 82.1
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 0.0e+00 1169.1 681 81.5
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 0.0e+00 1167.5 680 81.2
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 0.0e+00 1167.5 680 81.2
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 0.0e+00 1167.1 681 81.1
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 3.6e-302 1041.2 671 74.5
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 1.8e-298 1028.9 677 73.6
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.5e-297 1025.8 677 73.1
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 5.0e-296 1020.8 681 72.5
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 5.5e-295 1017.3 675 72.9
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 6.1e-294 1013.8 686 72.0
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 2.0e-292 1008.8 677 72.7
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 2.0e-292 1008.8 677 72.4
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 1.1e-287 993.0 681 72.2
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 7.5e-284 980.3 696 70.1
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 1.4e-269 932.9 667 67.8
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 9.8e-268 926.8 677 68.8
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 5.4e-258 894.4 679 65.5
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 5.6e-231 804.7 692 57.4
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 9.6e-231 803.9 693 56.4
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 8.1e-230 800.8 669 57.7
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 4.0e-229 798.5 693 56.6
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 8.9e-229 797.3 715 54.7
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.9e-227 792.3 671 56.5
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 1.1e-226 790.4 672 56.5
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 2.4e-226 789.3 685 55.8
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 3.2e-226 788.9 700 55.1
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 2.1e-225 786.2 679 56.0
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 2.7e-225 785.8 680 55.0
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 3.5e-225 785.4 672 56.1
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 1.3e-224 783.5 680 55.7
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 6.6e-224 781.2 675 56.1
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 3.3e-223 778.9 682 55.9
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 9.6e-223 777.3 672 55.8
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 9.6e-223 777.3 678 55.5
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 6.2e-222 774.6 691 54.7
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 1.8e-221 773.1 683 55.9
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 3.1e-221 772.3 701 53.8
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 3.1e-221 772.3 676 55.5
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 3.1e-221 772.3 693 54.4
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 4.0e-221 771.9 683 55.3
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 4.0e-221 771.9 671 55.3
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 6.9e-221 771.2 679 55.1
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 9.0e-221 770.8 688 56.0
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 1.2e-220 770.4 707 53.9
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 4.5e-220 768.5 678 55.3
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 1.7e-219 766.5 678 54.4
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 1.7e-219 766.5 688 54.8
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 2.2e-219 766.1 692 53.6
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 4.9e-219 765.0 680 55.0
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 6.4e-219 764.6 684 54.4
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 1.9e-218 763.1 693 54.1
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 1.9e-218 763.1 684 55.1
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 4.2e-218 761.9 699 53.1
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 7.1e-218 761.1 686 54.5
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 9.3e-218 760.8 697 53.9
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 9.3e-218 760.8 676 55.0
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 9.3e-218 760.8 740 51.5
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 2.1e-217 759.6 684 53.9
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 3.5e-217 758.8 694 53.5
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 6.0e-217 758.1 711 53.6
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 6.0e-217 758.1 697 52.7
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 7.9e-217 757.7 694 53.3
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 1.3e-216 756.9 695 54.7
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 1.3e-216 756.9 662 54.4
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 1.8e-216 756.5 672 54.5
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 3.9e-216 755.4 730 51.6
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 5.1e-216 755.0 694 53.5
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 6.7e-216 754.6 666 54.4
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 4.3e-215 751.9 719 51.5
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 2.8e-214 749.2 712 52.7
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 4.8e-214 748.4 688 53.9
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 6.2e-214 748.0 687 53.1
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 1.4e-213 746.9 675 52.9
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 1.8e-213 746.5 687 53.3
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 2.4e-213 746.1 682 53.2
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 3.1e-213 745.7 734 51.1
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 6.9e-213 744.6 681 54.3
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 1.5e-212 743.4 683 54.0
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 3.4e-212 742.3 669 54.4
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 7.6e-212 741.1 672 54.2
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 3.8e-211 738.8 698 52.7
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 4.2e-210 735.3 672 53.3
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 2.7e-209 732.6 661 53.9
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 4.3e-207 725.3 701 52.6
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 5.6e-207 724.9 685 53.0
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 7.4e-207 724.5 675 52.9
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 9.6e-207 724.2 683 52.9
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 4.8e-206 721.8 681 52.9
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 1.1e-205 720.7 661 53.1
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 2.4e-205 719.5 686 52.3
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 1.5e-204 716.8 675 52.1
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 6.5e-203 711.4 685 52.6
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 4.2e-202 708.8 612 55.9
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 7.1e-202 708.0 694 50.9
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.6e-201 706.8 625 53.9
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 1.9e-199 699.9 692 51.4
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 2.0e-196 689.9 852 44.8
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 3.4e-196 689.1 616 54.9
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 1.3e-192 677.2 675 51.1
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 6.7e-192 674.9 700 49.3
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 1.5e-191 673.7 674 49.3
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 2.5e-191 672.9 686 49.9
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 3.3e-191 672.5 665 50.4
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 5.3e-189 665.2 601 54.2
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.2e-188 664.1 716 48.5
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 1.0e-187 661.0 638 52.5
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 3.8e-187 659.1 665 49.5
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 3.2e-186 656.0 728 44.8
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 1.6e-185 653.7 594 54.0
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 3.6e-185 652.5 723 47.4
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 2.3e-184 649.8 687 48.2
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 4.4e-183 645.6 684 50.0
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 7.7e-180 634.8 680 48.4
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 3.9e-176 622.5 679 48.0
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 6.7e-176 621.7 670 48.2
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 3.8e-171 605.9 686 46.5
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.8e-165 587.0 689 44.8
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 1.6e-164 583.9 672 45.5
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 5.7e-159 565.5 539 51.2
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 1.3e-158 564.3 447 64.0
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 1.1e-157 561.2 660 47.0
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 1.5e-154 550.8 341 76.2
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 8.0e-153 545.0 680 43.8
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 1.5e-151 540.8 532 50.2
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 2.0e-148 530.4 560 47.3
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 1.0e-139 501.5 426 55.2
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 9.2e-133 478.4 545 45.9
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 2.1e-124 450.7 383 58.0
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 8.4e-110 402.1 289 63.3
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 1.1e-101 375.2 460 42.6
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 2.7e-100 370.5 231 74.0
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.5e-90 338.2 367 52.6
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 1.6e-89 334.7 313 50.2
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 8.2e-89 332.4 564 34.9
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 1.1e-85 322.0 404 41.8
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 3.9e-83 313.5 544 34.4
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 2.2e-81 307.8 398 41.5
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 2.2e-78 297.7 580 33.8
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 6.9e-72 276.2 173 79.2
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 1.6e-68 265.0 236 59.3
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 3.1e-64 250.8 239 57.7
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 1.1e-56 225.7 156 67.9
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 3.5e-55 220.7 223 52.9
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 4.7e-52 210.3 139 68.3
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 2.3e-51 208.0 334 36.8
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 3.7e-49 200.7 225 48.9
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 1.8e-43 181.8 99 83.8
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 1.8e-43 181.8 99 83.8
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 1.8e-43 181.8 99 83.8
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 3.1e-40 171.0 117 63.2
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 3.5e-39 167.5 120 61.7
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 3.0e-35 154.5 242 36.8
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 7.0e-24 116.7 182 34.6
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 7.0e-24 116.7 133 42.1
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 1.6e-23 115.5 214 30.4
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 1.2e-20 105.9 59 78.0
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 3.5e-15 87.8 71 54.9
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 1.0e-14 86.3 48 77.1
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 1.0e-14 86.3 48 77.1
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 1.3e-14 85.9 46 84.8
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 6.6e-14 83.6 266 26.7
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 9.9e-10 69.7 225 26.2
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 8.3e-09 66.6 148 30.4
BraA01t04202Z Brassica rapa HOM05D004070 ORTHO05D107995 3.2e-08 64.7 44 68.2


User provided reference genes

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