Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR207720 Cardamine hirsuta HOM05D003733 ORTHO05D004035 9.4e-152 540.4 326 100.0
CARHR246250 Cardamine hirsuta HOM05D003733 ORTHO05D004035 2.8e-95 352.8 333 71.2
AT4G37860 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 1.4e-54 217.6 336 50.9
C01p01330 Brassica napus HOM05D003733 ORTHO05D004035 2.5e-51 206.8 332 54.2
BolC1t00129H Brassica oleracea HOM05D003733 ORTHO05D004035 1.9e-48 197.2 340 52.1
A01p01170 Brassica napus HOM05D003733 ORTHO05D004035 2.6e-45 186.8 309 47.9
BraA01t00115Z Brassica rapa HOM05D003733 ORTHO05D004035 2.6e-45 186.8 323 45.8
BcaNung00967 Brassica carinata HOM05D003733 ORTHO05D004035 2.1e-42 177.2 333 49.2
Sp7g35500 Schrenkiella parvula HOM05D003733 ORTHO05D004035 7.7e-37 158.7 296 50.3
AL7G12820 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 5.0e-36 156.0 282 47.5
Thhalv10026061m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 9.7e-32 141.7 259 47.1
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 2.2e-23 114.0 521 28.2
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 8.2e-23 112.1 441 30.4
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 7.2e-19 99.0 164 43.3
BcaNung00969 Brassica carinata HOM05D003733 ORTHO05D004035 9.4e-19 98.6 85 72.9
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 3.6e-18 96.7 164 43.9
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 4.7e-18 96.3 536 28.9
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 1.2e-16 91.7 482 28.8
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 1.5e-16 91.3 397 28.5
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 5.7e-16 89.4 495 26.5
BolC8t51612H Brassica oleracea HOM05D003733 ORTHO05D004035 5.7e-16 89.4 495 26.5
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 5.7e-16 89.4 164 40.2
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 2.8e-15 87.0 383 29.0
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 4.8e-15 86.3 390 27.2
A09p57340 Brassica napus HOM05D003733 ORTHO05D004035 4.8e-15 86.3 499 26.7
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 1.1e-14 85.1 384 27.9
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 1.1e-14 85.1 369 30.1
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.8e-14 84.3 384 26.8
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 2.4e-14 84.0 476 26.9
BraA09t41127Z Brassica rapa HOM05D003733 ORTHO05D004035 4.1e-14 83.2 493 26.8
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 4.1e-14 83.2 352 30.7
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 7.0e-14 82.4 411 28.0
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 7.0e-14 82.4 386 27.7
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 1.2e-13 81.6 393 27.0
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 4.5e-13 79.7 393 29.0
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 7.7e-13 79.0 387 28.7
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 7.7e-13 79.0 393 27.5
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 1.3e-12 78.2 404 27.7
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 1.3e-12 78.2 382 26.7
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 2.2e-12 77.4 467 30.0
BolC4t26775H Brassica oleracea HOM05D003733 ORTHO05D004035 2.9e-12 77.0 465 30.3
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 3.8e-12 76.6 466 27.5
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 1.1e-11 75.1 415 26.0
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 1.1e-11 75.1 163 35.6
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 2.5e-11 73.9 385 29.4
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 3.2e-11 73.6 467 29.6
Thhalv10000080m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 3.2e-11 73.6 155 40.0
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 3.2e-11 73.6 159 37.7
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 3.2e-11 73.6 388 28.4
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 4.2e-11 73.2 302 30.5
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 4.2e-11 73.2 387 26.9
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 7.2e-11 72.4 165 37.0
Manes.06G161600 Manihot esculenta HOM05D003733 ORTHO05D004035 9.4e-11 72.0 204 34.8
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 2.1e-10 70.9 146 34.2
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 8.0e-10 68.9 367 28.6
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 1.0e-09 68.6 140 33.6
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 1.0e-09 68.6 215 29.8
Sabra16G0155500 Salix brachista HOM05D003733 ORTHO05D004035 1.4e-09 68.2 316 29.4
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 1.8e-09 67.8 154 33.1
Sabra16G0157300 Salix brachista HOM05D003733 ORTHO05D004035 3.0e-09 67.0 317 29.3
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 4.0e-09 66.6 142 38.0
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 5.2e-09 66.2 147 36.1
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 5.2e-09 66.2 169 34.3
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 6.8e-09 65.9 429 28.2
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 6.8e-09 65.9 151 35.1
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 8.8e-09 65.5 140 32.1
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 8.8e-09 65.5 391 25.3
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 2.6e-08 63.9 147 32.7
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 4.4e-08 63.2 147 32.7
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 4.4e-08 63.2 147 32.7
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 4.4e-08 63.2 405 25.4
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 4.4e-08 63.2 141 34.0
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 5.7e-08 62.8 148 39.9
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 5.7e-08 62.8 138 31.2
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 5.7e-08 62.8 144 33.3
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 7.5e-08 62.4 427 26.9
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 7.5e-08 62.4 148 35.8
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 9.8e-08 62.0 149 33.6
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 9.8e-08 62.0 147 34.7
BolC5t29034H Brassica oleracea HOM05D009573 ORTHO05D004035 1.3e-07 61.6 101 38.6
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 1.3e-07 61.6 148 34.5
Potri.001G257300 Populus trichocarpa HOM05D003733 ORTHO05D004035 2.2e-07 60.8 358 32.4
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 2.8e-07 60.5 459 25.5
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 3.7e-07 60.1 387 26.6
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 4.8e-07 59.7 124 38.7
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 6.3e-07 59.3 138 34.1
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 8.3e-07 58.9 124 37.1
Sc16g0000790 Simmondsia chinensis HOM05D003733 ORTHO05D004035 8.3e-07 58.9 146 35.6
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 1.1e-06 58.5 393 24.7
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 1.1e-06 58.5 149 35.6
MD02G1269400 Malus domestica HOM05D003733 ORTHO05D004035 1.4e-06 58.2 124 37.9
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 1.4e-06 58.2 149 33.6
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 1.4e-06 58.2 134 39.6
BolC3t21046H Brassica oleracea HOM05D009573 ORTHO05D004035 1.8e-06 57.8 73 47.9
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 1.8e-06 57.8 165 34.5
Aqoxy6G00872 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 2.4e-06 57.4 325 28.3
C07p48280 Brassica napus HOM05D009573 ORTHO05D017440 2.4e-06 57.4 73 47.9
BolC6t37033H Brassica oleracea HOM05D009573 ORTHO05D014968 2.4e-06 57.4 98 37.8
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 2.4e-06 57.4 392 27.0
SalBow5G1957 Salvia bowleyana HOM05D003733 ORTHO05D004035 2.4e-06 57.4 122 38.5
C06p24730 Brassica napus HOM05D009573 ORTHO05D014968 3.1e-06 57.0 73 47.9
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 3.1e-06 57.0 400 25.8
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 3.1e-06 57.0 137 30.7
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 3.1e-06 57.0 383 26.6
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 3.1e-06 57.0 383 26.6
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 4.1e-06 56.6 350 27.4
BcaC09g50974 Brassica carinata HOM05D009573 ORTHO05D016742 4.1e-06 56.6 73 47.9
C01p18560 Brassica napus HOM05D009573 ORTHO05D016742 4.1e-06 56.6 73 47.9
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 4.1e-06 56.6 147 32.7
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 4.1e-06 56.6 147 36.1
Ah.03g142000 Amaranthus hybridus HOM05D000288 ORTHO05D000173 5.4e-06 56.2 141 35.5
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 5.4e-06 56.2 146 32.9
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 5.4e-06 56.2 147 33.3
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 5.4e-06 56.2 147 33.3
Sc16g0000800 Simmondsia chinensis HOM05D003733 ORTHO05D004035 5.4e-06 56.2 136 40.4
BcaC08g44389 Brassica carinata HOM05D009573 ORTHO05D016742 7.0e-06 55.8 73 46.6
BolC6t37222H Brassica oleracea HOM05D009573 ORTHO05D004035 7.0e-06 55.8 73 46.6


User provided reference genes

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