Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR207250 Cardamine hirsuta HOM05D012265 ORTHO05D014407 2.0e-60 235.7 134 100.0
AT5G05965 Arabidopsis thaliana HOM05D012265 ORTHO05D014407 3.9e-35 151.8 134 67.2
AL6G15900 Arabidopsis lyrata HOM05D012265 ORTHO05D014407 2.4e-29 132.5 136 61.8
A10p30390 Brassica napus HOM05D012265 ORTHO05D014407 1.5e-18 96.7 132 54.5
BraA10t45078Z Brassica rapa HOM05D012265 ORTHO05D014407 1.5e-18 96.7 132 54.5
Thhalv10015871m.g Eutrema salsugineum HOM05D012265 ORTHO05D014407 2.1e-17 92.8 137 48.9
C09p70830 Brassica napus HOM05D012265 ORTHO05D014407 4.7e-17 91.7 132 50.8
BolC9t59842H Brassica oleracea HOM05D012265 ORTHO05D014407 6.2e-17 91.3 132 50.8
MELO3C026564.2 Cucumis melo HOM05D001463 ORTHO05D001282 8.4e-14 80.9 156 41.0
Glyma.02G252500 Glycine max HOM05D001463 ORTHO05D001282 8.4e-14 80.9 144 41.7
CsaV3_5G008550 Cucumis sativus L. HOM05D001463 ORTHO05D001282 1.1e-13 80.5 156 41.0
CiPaw.02G188100 Carya illinoinensis HOM05D001463 ORTHO05D001282 1.4e-13 80.1 167 41.9
Potri.008G061700 Populus trichocarpa HOM05D001463 ORTHO05D001282 3.2e-13 79.0 143 39.2
Potri.010G196400 Populus trichocarpa HOM05D001463 ORTHO05D001282 4.1e-13 78.6 141 41.1
Ca_05913_v3 Cicer arietinum L. HOM05D001463 ORTHO05D001282 1.2e-12 77.0 155 41.9
Haze_17151 Corylus avellana HOM05D001463 ORTHO05D001282 1.6e-12 76.6 152 41.4
Medtr5g081360 Medicago truncatula HOM05D001463 ORTHO05D001282 2.7e-12 75.9 152 42.1
Lalb_Chr18g0052921 Lupinus albus HOM05D001463 ORTHO05D001282 3.5e-12 75.5 145 44.8
BcaC02g09782 Brassica carinata HOM05D001463 ORTHO05D001282 4.6e-12 75.1 131 40.5
BolC2t06220H Brassica oleracea HOM05D012265 ORTHO05D014407 4.6e-12 75.1 155 43.2
Carub.0006s0485 Capsella rubella HOM05D012265 ORTHO05D014407 6.0e-12 74.7 135 44.4
Sed0003709 Sechium edule HOM05D001463 ORTHO05D001282 7.8e-12 74.3 144 37.5
CiPaw.01G293300 Carya illinoinensis HOM05D001463 ORTHO05D001282 1.3e-11 73.6 152 39.5
Lj6g0014007 Lotus japonicus HOM05D001463 ORTHO05D001282 1.3e-11 73.6 134 46.3
QL08p062024 Quercus lobata HOM05D001463 ORTHO05D001282 1.7e-11 73.2 143 37.8
Ciclev10033996m.g Citrus clementina HOM05D001463 ORTHO05D001282 2.3e-11 72.8 154 46.8
Thecc.10G031300 Theobroma cacao HOM05D001463 ORTHO05D001282 2.3e-11 72.8 150 47.3
FvH4_7g23590 Fragaria vesca HOM05D001463 ORTHO05D001282 3.9e-11 72.0 154 39.0
Sabra08G0045300 Salix brachista HOM05D001463 ORTHO05D001282 5.1e-11 71.6 140 40.0
Phvul.001G238300 Phaseolus vulgaris HOM05D001463 ORTHO05D001282 6.6e-11 71.2 159 41.5
Cpa.g.sc19.255 Carica papaya HOM05D001463 ORTHO05D001282 8.6e-11 70.9 136 39.0
Manes.10G021200 Manihot esculenta HOM05D001463 ORTHO05D001282 8.6e-11 70.9 147 49.0
Gohir.A10G225400 Gossypium hirsutum HOM05D001463 ORTHO05D001282 1.9e-10 69.7 141 42.6
Sp6g36930 Schrenkiella parvula HOM05D012265 ORTHO05D014407 1.9e-10 69.7 134 44.0
Lalb_Chr10g0104861 Lupinus albus HOM05D001463 ORTHO05D001282 3.3e-10 68.9 139 38.1
ClCG07G003740 Citrullus lanatus HOM05D001463 ORTHO05D001282 4.3e-10 68.6 148 35.8
THA.LOC104816574 Tarenaya hassleriana HOM05D001463 ORTHO05D001282 7.3e-10 67.8 154 37.7
HanXRQChr07g0202061 Helianthus annuus HOM05D001463 ORTHO05D001282 9.6e-10 67.4 156 39.7
Glyma.18G033302 Glycine max HOM05D001463 ORTHO05D001282 1.2e-09 67.0 148 41.2
C04p36660 Brassica napus HOM05D001463 ORTHO05D001282 1.6e-09 66.6 130 36.9
BolC4t25129H Brassica oleracea HOM05D001463 ORTHO05D001282 1.6e-09 66.6 130 36.9
Manes.07G122500 Manihot esculenta HOM05D001463 ORTHO05D001282 1.6e-09 66.6 148 39.2
Atru.chr12.267 Acer truncatum HOM05D001463 ORTHO05D001282 2.1e-09 66.2 136 40.4
AL4G37420 Arabidopsis lyrata HOM05D001463 ORTHO05D001282 2.1e-09 66.2 150 38.7
BcaB02g08404 Brassica carinata HOM05D001463 ORTHO05D001282 2.8e-09 65.9 147 36.1
Psat2g037000 Pisum sativum HOM05D001463 ORTHO05D001282 2.8e-09 65.9 153 39.2
FAN06G0722 Fragaria x ananassa HOM05D001463 ORTHO05D001282 3.6e-09 65.5 147 36.7
MSTRG.8288 Avicennia marina HOM05D001463 ORTHO05D001282 6.2e-09 64.7 155 36.1
AUR62020062 Chenopodium quinoa HOM05D001463 ORTHO05D001282 6.2e-09 64.7 163 36.8
THA.LOC104810063 Tarenaya hassleriana HOM05D001463 ORTHO05D001282 6.2e-09 64.7 156 37.2
ECA232G2252 Erigeron canadensis HOM05D001463 ORTHO05D001282 8.1e-09 64.3 137 40.9
Gorai.011G273400 Gossypium raimondii HOM05D001463 ORTHO05D001282 1.1e-08 63.9 140 40.7
SalBow4G3124 Salvia bowleyana HOM05D001463 ORTHO05D001282 1.4e-08 63.5 132 43.2
A05p06550 Brassica napus HOM05D001463 ORTHO05D001282 1.8e-08 63.2 148 33.8
BraA02t04866Z Brassica rapa HOM05D012265 ORTHO05D014407 2.4e-08 62.8 52 75.0
Gohir.A05G302600 Gossypium hirsutum HOM05D001463 ORTHO05D001282 2.4e-08 62.8 165 33.9
Gohir.D10G238356 Gossypium hirsutum HOM05D001463 ORTHO05D001282 2.4e-08 62.8 139 41.0
Dinv34453 Davidia involucrata HOM05D001463 ORTHO05D001282 3.1e-08 62.4 163 36.8
Manes.02G126600 Manihot esculenta HOM05D001463 ORTHO05D001282 3.1e-08 62.4 160 38.1
Cc02_g07230 Coffea canephora HOM05D001463 ORTHO05D001282 4.0e-08 62.0 157 38.2
Glyma.14G064100 Glycine max HOM05D001463 ORTHO05D001282 4.0e-08 62.0 153 34.6
HanXRQChr07g0202081 Helianthus annuus HOM05D001463 ORTHO05D001282 4.0e-08 62.0 155 37.4
Hund04907 Selenicereus undatus HOM05D001463 ORTHO05D001282 4.0e-08 62.0 157 36.3
RcHm_v2.0_Chr1g0368821 Rosa chinensis HOM05D022825 ORTHO05D001282 5.2e-08 61.6 150 40.7
Solyc05g052890.3 Solanum lycopersicum HOM05D001463 ORTHO05D001282 6.8e-08 61.2 153 39.2
GSVIVG01016436001 Vitis vinifera HOM05D001463 ORTHO05D001282 6.8e-08 61.2 162 37.0
BcaB02g09078 Brassica carinata HOM05D001463 ORTHO05D001282 8.9e-08 60.8 132 34.1
C04p67640 Brassica napus HOM05D001463 ORTHO05D001282 8.9e-08 60.8 143 35.7
BolC4t28263H Brassica oleracea HOM05D001463 ORTHO05D001282 8.9e-08 60.8 143 35.7
FAN03G1607 Fragaria x ananassa HOM05D022825 ORTHO05D001282 8.9e-08 60.8 125 40.8
LjContig00141g0012501 Lotus japonicus HOM05D001463 ORTHO05D001282 8.9e-08 60.8 154 33.8
LjContig00141g0025360 Lotus japonicus HOM05D001463 ORTHO05D001282 1.2e-07 60.5 158 36.1
Sc11g0007610 Simmondsia chinensis HOM05D001463 ORTHO05D001282 1.2e-07 60.5 155 37.4
PGSC0003DMG400002161 Solanum tuberosum HOM05D001463 ORTHO05D001282 1.2e-07 60.5 157 35.0
AT5G02020 Arabidopsis thaliana HOM05D001463 ORTHO05D001282 1.5e-07 60.1 157 36.9
EL10Ac7g16089 Beta vulgaris HOM05D001463 ORTHO05D001282 1.5e-07 60.1 136 38.2
A04p04330 Brassica napus HOM05D001463 ORTHO05D001282 1.5e-07 60.1 132 34.1
BraA04t16144Z Brassica rapa HOM05D001463 ORTHO05D001282 1.5e-07 60.1 132 34.1
Gohir.D05G092800 Gossypium hirsutum HOM05D001463 ORTHO05D001282 1.5e-07 60.1 146 37.7
Lsat_1_v5_gn_2_117121 Lactuca sativa HOM05D001463 ORTHO05D001282 1.5e-07 60.1 162 35.8
Medtr5g012280 Medicago truncatula HOM05D001463 ORTHO05D001282 1.5e-07 60.1 152 34.9
Carub.0004s2198 Capsella rubella HOM05D001463 ORTHO05D001282 2.0e-07 59.7 121 42.1
Psat5g124880 Pisum sativum HOM05D001463 ORTHO05D001282 2.0e-07 59.7 120 37.5
Sabra10G0151000 Salix brachista HOM05D001463 ORTHO05D001282 2.0e-07 59.7 138 36.2
Solyc09g011470.3 Solanum lycopersicum HOM05D001463 ORTHO05D001282 2.0e-07 59.7 158 35.4
VMungo1383G2188 Vigna mungo HOM05D001463 ORTHO05D001282 2.0e-07 59.7 139 36.0
Aqoxy1G00796 Aquilegia oxysepala HOM05D001463 ORTHO05D001282 2.6e-07 59.3 149 34.2
BcaC02g12118 Brassica carinata HOM05D001463 ORTHO05D001282 2.6e-07 59.3 133 31.6
C02p02550 Brassica napus HOM05D012265 ORTHO05D014407 2.6e-07 59.3 52 73.1
Dinv16275 Davidia involucrata HOM05D001463 ORTHO05D001282 2.6e-07 59.3 164 34.8
Actinidia02381 Actinidia chinensis HOM05D001463 ORTHO05D001282 4.4e-07 58.5 141 40.4
Aa31LG1G11770 Aethionema arabicum HOM05D001463 ORTHO05D001282 4.4e-07 58.5 137 38.0
Eucgr.J00967 Eucalyptus grandis HOM05D001463 ORTHO05D001282 4.4e-07 58.5 163 33.7
Sopen05g031400 Solanum pennellii HOM05D001463 ORTHO05D001282 4.4e-07 58.5 153 38.6
BcaC06g32307 Brassica carinata HOM05D012265 ORTHO05D014407 7.6e-07 57.8 90 45.6
Migut.J00263 Erythranthe guttata HOM05D001463 ORTHO05D001282 7.6e-07 57.8 151 34.4
AT5G59080 Arabidopsis thaliana HOM05D001463 ORTHO05D001282 1.3e-06 57.0 139 37.4
HanXRQChr06g0177681 Helianthus annuus HOM05D001463 ORTHO05D001282 1.3e-06 57.0 152 38.2
MSTRG.19051 Avicennia marina HOM05D001463 ORTHO05D001282 1.7e-06 56.6 150 34.7
MSTRG.5625 Avicennia marina HOM05D001463 ORTHO05D001282 1.7e-06 56.6 150 35.3
BcaC01g01877 Brassica carinata HOM05D001463 ORTHO05D001282 1.7e-06 56.6 132 38.6
FAN06G2530 Fragaria x ananassa HOM05D022825 ORTHO05D001282 1.7e-06 56.6 150 34.7
MD11G1091200 Malus domestica HOM05D001463 ORTHO05D001282 1.7e-06 56.6 157 36.3
AL8G35630 Arabidopsis lyrata HOM05D001463 ORTHO05D001282 2.2e-06 56.2 139 38.1
BcaB08g36279 Brassica carinata HOM05D001463 ORTHO05D001282 2.2e-06 56.2 137 38.0
Carub.0008s1987 Capsella rubella HOM05D001463 ORTHO05D001282 2.2e-06 56.2 133 36.1
Rhsim03G0137600 Rhododendron simsii HOM05D001463 ORTHO05D001282 2.2e-06 56.2 150 34.7
Gohir.A05G092000 Gossypium hirsutum HOM05D001463 ORTHO05D001282 2.9e-06 55.8 140 35.0
Oeu013160.1 Olea europaea HOM05D001463 ORTHO05D001282 2.9e-06 55.8 152 35.5
Gorai.009G095400 Gossypium raimondii HOM05D001463 ORTHO05D001282 3.8e-06 55.5 139 36.0
AL5G25910 Arabidopsis lyrata HOM05D001463 ORTHO05D001282 4.9e-06 55.1 134 37.3
AT3G46880 Arabidopsis thaliana HOM05D001463 ORTHO05D001282 4.9e-06 55.1 133 38.3
A10p16390 Brassica napus HOM05D001463 ORTHO05D001282 4.9e-06 55.1 134 38.1
BraA10t43726Z Brassica rapa HOM05D001463 ORTHO05D001282 4.9e-06 55.1 134 38.1
Potri.009G038300 Populus trichocarpa HOM05D001463 ORTHO05D001282 4.9e-06 55.1 166 36.1
BcaB05g22486 Brassica carinata HOM05D001463 ORTHO05D001282 6.4e-06 54.7 136 39.0
A03p11840 Brassica napus HOM05D001463 ORTHO05D001282 6.4e-06 54.7 135 37.0
BolC3t13837H Brassica oleracea HOM05D001463 ORTHO05D001282 6.4e-06 54.7 135 37.0
ECA238G2806 Erigeron canadensis HOM05D001463 ORTHO05D001282 6.4e-06 54.7 160 35.6
Peaxi162Scf00975g10014 Petunia axillaris HOM05D001463 ORTHO05D001282 6.4e-06 54.7 159 35.8
Sp6g20900 Schrenkiella parvula HOM05D001463 ORTHO05D001282 6.4e-06 54.7 134 38.1
BcaB02g09077 Brassica carinata HOM05D001463 ORTHO05D001282 8.4e-06 54.3 142 33.8
BcaC03g14033 Brassica carinata HOM05D001463 ORTHO05D001282 8.4e-06 54.3 134 38.1
C02p12720 Brassica napus HOM05D001463 ORTHO05D001282 8.4e-06 54.3 134 38.1
BolC2t07370H Brassica oleracea HOM05D001463 ORTHO05D001282 8.4e-06 54.3 134 38.1
BraA05t19624Z Brassica rapa HOM05D001463 ORTHO05D001282 8.4e-06 54.3 156 31.4
Dinv37114 Davidia involucrata HOM05D001463 ORTHO05D001282 8.4e-06 54.3 160 38.1
Thhalv10014998m.g Eutrema salsugineum HOM05D001463 ORTHO05D001282 8.4e-06 54.3 134 37.3
HanXRQChr09g0246971 Helianthus annuus HOM05D001463 ORTHO05D001282 8.4e-06 54.3 129 38.0
PGR044G2554 Punica granatum HOM05D001463 ORTHO05D001282 8.4e-06 54.3 70 47.1


User provided reference genes

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