Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR205910 Cardamine hirsuta HOM05D005649 ORTHO05D006837 1.2e-43 179.5 92 100.0
AL6G17460 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 3.5e-35 151.4 91 84.6
Thhalv10015126m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 3.8e-34 147.9 93 80.6
AT5G07230 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 1.9e-33 145.6 91 81.3
Sp6g35660 Schrenkiella parvula HOM05D005649 ORTHO05D006837 5.5e-33 144.1 95 75.8
A10p28990 Brassica napus HOM05D005649 ORTHO05D006837 2.8e-29 131.7 90 72.2
BraA10t44947Z Brassica rapa HOM05D005649 ORTHO05D006837 2.8e-29 131.7 90 72.2
Carub.0006s0617 Capsella rubella HOM05D005649 ORTHO05D006837 8.2e-29 130.2 71 87.3
C09p69350 Brassica napus HOM05D005649 ORTHO05D006837 1.1e-28 129.8 90 70.0
BolC9t59679H Brassica oleracea HOM05D005649 ORTHO05D006837 1.1e-28 129.8 90 70.0
BcaC06g32460 Brassica carinata HOM05D005649 ORTHO05D006837 1.2e-27 126.3 69 82.6
Carub.0008s2276 Capsella rubella HOM05D005649 ORTHO05D006837 4.0e-23 111.3 95 64.2
AL8G38860 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 5.2e-23 110.9 93 64.5
CARHR275870 Cardamine hirsuta HOM05D005649 ORTHO05D006837 1.2e-22 109.8 92 66.3
AT5G62080 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 1.5e-22 109.4 93 63.4
Thhalv10005193m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 1.5e-22 109.4 95 63.2
Sp2g25250 Schrenkiella parvula HOM05D005649 ORTHO05D006837 4.4e-22 107.8 89 62.9
Aa31LG2G14300 Aethionema arabicum HOM05D005649 ORTHO05D006837 6.3e-21 104.0 85 56.5
TPR.G17428 Trifolium pratense HOM05D005649 ORTHO05D006837 2.5e-17 92.0 89 49.4
Medtr1g101360 Medicago truncatula HOM05D005649 ORTHO05D006837 1.6e-16 89.4 90 47.8
Sc13g0008480 Simmondsia chinensis HOM05D005649 ORTHO05D006837 2.8e-16 88.6 97 49.5
Psat0s6119g0040 Pisum sativum HOM05D005649 ORTHO05D006837 4.7e-16 87.8 81 54.3
CiPaw.04G066700 Carya illinoinensis HOM05D005649 ORTHO05D006837 1.0e-15 86.7 91 46.2
CiPaw.03G103300 Carya illinoinensis HOM05D005649 ORTHO05D006837 4.0e-15 84.7 92 44.6
Lalb_Chr01g0009161 Lupinus albus HOM05D005649 ORTHO05D006837 4.0e-15 84.7 92 48.9
Oeu062770.1 Olea europaea HOM05D005649 ORTHO05D006837 6.8e-15 84.0 66 56.1
Aa31LG2G14310 Aethionema arabicum HOM05D005649 ORTHO05D006837 8.8e-15 83.6 84 53.6
Haze_13744 Corylus avellana HOM05D005649 ORTHO05D006837 8.8e-15 83.6 95 44.2
Lsat_1_v5_gn_2_132960 Lactuca sativa HOM05D005649 ORTHO05D006837 8.8e-15 83.6 90 44.4
Ca_10790_v3 Cicer arietinum L. HOM05D005649 ORTHO05D006837 2.6e-14 82.0 90 45.6
Hma1.2p1_1323F.1_g275520 Hydrangea macrophylla HOM05D005649 ORTHO05D006837 2.6e-14 82.0 94 44.7
Thecc.03G171600 Theobroma cacao HOM05D005649 ORTHO05D006837 2.6e-14 82.0 92 43.5
CANSAT21G0877 Cannabis sativa HOM05D005649 ORTHO05D006837 3.4e-14 81.6 77 48.1
THA.LOC109117151 Tarenaya hassleriana HOM05D005649 ORTHO05D006837 3.4e-14 81.6 83 50.6
Duzib084G1193 Durio zibethinus HOM05D005649 ORTHO05D006837 4.4e-14 81.3 88 46.6
Lalb_Chr19g0130991 Lupinus albus HOM05D005649 ORTHO05D006837 7.5e-14 80.5 89 47.2
Phvul.004G120100 Phaseolus vulgaris HOM05D005649 ORTHO05D006837 7.5e-14 80.5 84 48.8
Ciclev10006307m.g Citrus clementina HOM05D005649 ORTHO05D006837 9.8e-14 80.1 85 44.7
CSS0017664 Camellia sinensis var. sinensis HOM05D005649 ORTHO05D006837 1.3e-13 79.7 90 41.1
Actinidia03109 Actinidia chinensis HOM05D005649 ORTHO05D006837 2.2e-13 79.0 87 46.0
EL10Ac3g05710 Beta vulgaris HOM05D005649 ORTHO05D006837 2.2e-13 79.0 85 47.1
MELO3C006883.2 Cucumis melo HOM05D005649 ORTHO05D006837 2.2e-13 79.0 80 48.8
Sabra15G0150200 Salix brachista HOM05D005649 ORTHO05D006837 2.2e-13 79.0 84 44.0
Sed0025700 Sechium edule HOM05D005649 ORTHO05D006837 2.8e-13 78.6 79 49.4
Gohir.D09G040900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 3.7e-13 78.2 88 43.2
HanXRQChr14g0462161 Helianthus annuus HOM05D005649 ORTHO05D006837 3.7e-13 78.2 88 42.0
CsaV3_3G016880 Cucumis sativus L. HOM05D005649 ORTHO05D006837 4.9e-13 77.8 85 49.4
Duzib068G0970 Durio zibethinus HOM05D005649 ORTHO05D006837 4.9e-13 77.8 66 53.0
Potri.015G139100 Populus trichocarpa HOM05D005649 ORTHO05D006837 4.9e-13 77.8 83 43.4
PSO478G4859 Papaver somniferum HOM05D005649 ORTHO05D006837 1.1e-12 76.6 84 42.9
Gohir.A11G009800 Gossypium hirsutum HOM05D005649 ORTHO05D006837 1.4e-12 76.3 90 43.3
Gohir.D11G009100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 1.4e-12 76.3 90 43.3
Gorai.007G010700 Gossypium raimondii HOM05D005649 ORTHO05D006837 1.4e-12 76.3 90 43.3
Atru.chr1.509 Acer truncatum HOM05D005649 ORTHO05D006837 1.8e-12 75.9 86 45.3
CAN.G769.4 Capsicum annuum HOM05D005649 ORTHO05D006837 1.8e-12 75.9 86 41.9
PSO782G3448 Papaver somniferum HOM05D005649 ORTHO05D006837 1.8e-12 75.9 84 42.9
Glyma.16G197100 Glycine max HOM05D005649 ORTHO05D006837 2.4e-12 75.5 91 41.8
Nitab4.5_0002107g0070 Nicotiana tabacum HOM05D005649 ORTHO05D006837 2.4e-12 75.5 81 43.2
COL.COLO4_14273 Corchorus olitorius HOM05D005649 ORTHO05D006837 3.1e-12 75.1 91 41.8
Peaxi162Scf00040g00425 Petunia axillaris HOM05D005649 ORTHO05D006837 5.4e-12 74.3 75 44.0
PGR042G0682 Punica granatum HOM05D005649 ORTHO05D006837 5.4e-12 74.3 76 47.4
Gohir.A12G260100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 1.6e-11 72.8 86 43.0
Potri.012G137400 Populus trichocarpa HOM05D005649 ORTHO05D006837 1.6e-11 72.8 93 40.9
Aqoxy7G00428 Aquilegia oxysepala HOM05D005649 ORTHO05D006837 2.0e-11 72.4 91 41.8
AUR62021224 Chenopodium quinoa HOM05D005649 ORTHO05D006837 2.0e-11 72.4 91 37.4
DCAR_014595 Daucus carota HOM05D005649 ORTHO05D006837 2.0e-11 72.4 84 44.0
PSO782G2995 Papaver somniferum HOM05D005649 ORTHO05D006837 2.0e-11 72.4 85 41.2
SalBow6G6599 Salvia bowleyana HOM05D000001 ORTHO05D010467 2.0e-11 72.4 65 49.2
Solyc06g035820.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 2.0e-11 72.4 84 45.2
TWI63G0636 Tripterygium wilfordii HOM05D005649 ORTHO05D006837 2.0e-11 72.4 83 44.6
TAR629G2474 Trochodendron aralioides HOM05D005649 ORTHO05D006837 2.0e-11 72.4 89 39.3
Actinidia34088 Actinidia chinensis HOM05D005649 ORTHO05D006837 2.7e-11 72.0 73 43.8
Manes.14G028300 Manihot esculenta HOM05D005649 ORTHO05D006837 2.7e-11 72.0 92 40.2
SalBow6G0552 Salvia bowleyana HOM05D000001 ORTHO05D010467 2.7e-11 72.0 61 50.8
Sp6g14410 Schrenkiella parvula HOM05D005649 ORTHO05D006837 2.7e-11 72.0 83 38.6
Solyc03g026115.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 2.7e-11 72.0 88 42.0
Prupe.2G290900 Prunus persica HOM05D005649 ORTHO05D006837 3.5e-11 71.6 85 41.2
Ah.07g209060 Amaranthus hybridus HOM05D005649 ORTHO05D006837 4.5e-11 71.2 85 40.0
Cpa.g.sc107.18 Carica papaya HOM05D005649 ORTHO05D006837 4.5e-11 71.2 91 40.7
CAN.G28.8 Capsicum annuum HOM05D005649 ORTHO05D006837 5.9e-11 70.9 85 38.8
Gohir.D12G260900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 7.8e-11 70.5 86 41.9
Gorai.008G279600 Gossypium raimondii HOM05D005649 ORTHO05D006837 7.8e-11 70.5 86 41.9
AUR62016019 Chenopodium quinoa HOM05D005649 ORTHO05D006837 1.0e-10 70.1 91 39.6
DCAR_018179 Daucus carota HOM05D005649 ORTHO05D006837 1.0e-10 70.1 84 47.6
FvH4_7g29091 Fragaria vesca HOM05D005649 ORTHO05D006837 1.0e-10 70.1 87 41.4
FAN03G0279 Fragaria x ananassa HOM05D005649 ORTHO05D006837 1.0e-10 70.1 87 41.4
MD01G1197500 Malus domestica HOM05D005649 ORTHO05D006837 1.0e-10 70.1 87 40.2
Dinv35188 Davidia involucrata HOM05D005649 ORTHO05D006837 1.3e-10 69.7 94 35.1
RcHm_v2.0_Chr1g0376811 Rosa chinensis HOM05D005649 ORTHO05D006837 1.3e-10 69.7 86 40.7
Glyma.09G144000 Glycine max HOM05D005649 ORTHO05D006837 1.7e-10 69.3 92 38.0
CDE11G0782 Ceratophyllum demersum HOM05D005649 ORTHO05D006837 2.3e-10 68.9 80 41.2
Lj2g0004156 Lotus japonicus HOM05D005649 ORTHO05D006837 2.3e-10 68.9 85 41.2
SalBow2G3129 Salvia bowleyana HOM05D005649 ORTHO05D006837 2.3e-10 68.9 78 47.4
PGSC0003DMG400004517 Solanum tuberosum HOM05D000087 ORTHO05D000439 2.3e-10 68.9 63 49.2
Nitab4.5_0004480g0060 Nicotiana tabacum HOM05D005649 ORTHO05D006837 2.9e-10 68.6 93 39.8
BcaC01g06166 Brassica carinata HOM05D005649 ORTHO05D006837 3.8e-10 68.2 82 37.8
BcaC01g06170 Brassica carinata HOM05D005649 ORTHO05D006837 3.8e-10 68.2 82 37.8
BolC3t14245H Brassica oleracea HOM05D005649 ORTHO05D006837 3.8e-10 68.2 82 37.8
CARHR265080 Cardamine hirsuta HOM05D005649 ORTHO05D006837 3.8e-10 68.2 82 39.0
Sed0000609 Sechium edule HOM05D005649 ORTHO05D006837 3.8e-10 68.2 88 43.2
ATR0757G068 Amborella trichopoda HOM05D005649 ORTHO05D006837 5.0e-10 67.8 83 44.6
BraA03t10871Z Brassica rapa HOM05D005649 ORTHO05D006837 5.0e-10 67.8 82 37.8
Aa31LG3G8540 Aethionema arabicum HOM05D005649 ORTHO05D006837 6.6e-10 67.4 89 38.2
A03p15810 Brassica napus HOM05D005649 ORTHO05D006837 6.6e-10 67.4 82 37.8
C09p41580 Brassica napus HOM05D005649 ORTHO05D006837 6.6e-10 67.4 82 37.8
BolC9t57041H Brassica oleracea HOM05D005649 ORTHO05D006837 1.1e-09 66.6 76 39.5
Carub.0008s1225 Capsella rubella HOM05D005649 ORTHO05D006837 1.1e-09 66.6 66 43.9
CAN.G166.5 Capsicum annuum HOM05D005649 ORTHO05D006837 1.1e-09 66.6 78 43.6
AL8G26550 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 1.5e-09 66.2 82 37.8
BcaB01g04189 Brassica carinata HOM05D005649 ORTHO05D006837 1.5e-09 66.2 82 36.6
AT5G52160 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 1.9e-09 65.9 87 36.8
A10p09850 Brassica napus HOM05D005649 ORTHO05D006837 2.5e-09 65.5 83 37.3
BraA10t43066Z Brassica rapa HOM05D005649 ORTHO05D006837 2.5e-09 65.5 83 37.3
Solyc01g009590.3 Solanum lycopersicum HOM05D005649 ORTHO05D006837 3.3e-09 65.1 63 44.4
Sopen01g005120 Solanum pennellii HOM05D005649 ORTHO05D006837 3.3e-09 65.1 63 44.4
DCAR_018177 Daucus carota HOM05D005649 ORTHO05D006837 5.6e-09 64.3 84 38.1
Migut.F00365 Erythranthe guttata HOM05D005649 ORTHO05D006837 7.3e-09 63.9 61 45.9
Thhalv10015124m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 7.3e-09 63.9 68 41.2
C03p18480 Brassica napus HOM05D005649 ORTHO05D006837 9.5e-09 63.5 70 40.0
Cc02_g03310 Coffea canephora HOM05D005649 ORTHO05D006837 9.5e-09 63.5 90 41.1
Migut.F01138 Erythranthe guttata HOM05D005649 ORTHO05D006837 1.2e-08 63.2 86 40.7
PSO782G4359 Papaver somniferum HOM05D005649 ORTHO05D006837 1.6e-08 62.8 92 38.0
Eucgr.K00231 Eucalyptus grandis HOM05D005649 ORTHO05D006837 2.1e-08 62.4 85 41.2
Nn8g41026 Nelumbo nucifera HOM05D005649 ORTHO05D006837 2.8e-08 62.0 90 36.7
FAN03G1726 Fragaria x ananassa HOM05D005649 ORTHO05D006837 6.1e-08 60.8 53 54.7
QL09p014765 Quercus lobata HOM05D005649 ORTHO05D006837 8.0e-08 60.5 92 38.0
SEGI_28530 Sequoiadendron giganteum HOM05D005649 ORTHO05D006837 1.4e-07 59.7 84 34.5
Peaxi162Scf00132g01516 Petunia axillaris HOM05D005649 ORTHO05D006837 1.8e-07 59.3 84 38.1
Aa31LG2G14360 Aethionema arabicum HOM05D005649 ORTHO05D006837 4.0e-07 58.2 80 40.0
BcaB08g35564 Brassica carinata HOM05D005649 ORTHO05D006837 4.0e-07 58.2 85 34.1
Nn1g01375 Nelumbo nucifera HOM05D005649 ORTHO05D006837 1.5e-06 56.2 83 37.3
SGA_v2.0_scaffold10G05368 Striga asiatica HOM05D005649 ORTHO05D006837 2.0e-06 55.8 81 39.5


User provided reference genes

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