Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR205180 Cardamine hirsuta HOM05D009441 ORTHO05D010605 2.7e-79 298.5 141 100.0
AT5G08005 Arabidopsis thaliana HOM05D009441 ORTHO05D010605 1.4e-27 126.7 142 52.8
Sp6g34940 Schrenkiella parvula HOM05D009441 ORTHO05D010605 5.9e-26 121.3 135 44.4
AL6G18350 Arabidopsis lyrata HOM05D009441 ORTHO05D010605 1.4e-24 116.7 146 48.6
A10p28620 Brassica napus HOM05D009441 ORTHO05D010605 3.2e-24 115.5 135 46.7
C09p68910 Brassica napus HOM05D009441 ORTHO05D010605 3.6e-23 112.1 135 46.7
BraA10t44911Z Brassica rapa HOM05D009441 ORTHO05D010605 3.6e-23 112.1 124 49.2
Carub.0006s0689 Capsella rubella HOM05D009441 ORTHO05D010605 2.3e-22 109.4 106 53.8
AT5G61110 Arabidopsis thaliana HOM05D009441 ORTHO05D010605 8.8e-14 80.9 61 55.7
Aa31LG3G18530 Aethionema arabicum HOM05D000016 ORTHO05D000487 4.4e-13 78.6 56 53.6
AL8G37740 Arabidopsis lyrata HOM05D009441 ORTHO05D010605 9.7e-13 77.4 66 47.0
BcaB07g34219 Brassica carinata HOM05D007909 ORTHO05D010605 1.3e-12 77.0 76 46.1
CARHR274790 Cardamine hirsuta HOM05D009441 ORTHO05D010605 2.2e-12 76.3 47 59.6
C02p61360 Brassica napus HOM05D009441 ORTHO05D010605 3.7e-12 75.5 52 53.8
BraA02t09085Z Brassica rapa HOM05D009441 ORTHO05D010605 3.7e-12 75.5 52 53.8
Sp2g24365 Schrenkiella parvula HOM05D007909 ORTHO05D010605 8.2e-12 74.3 60 55.0
BcaC06g33178 Brassica carinata HOM05D007909 ORTHO05D010605 1.1e-11 73.9 52 57.7
A02p41420 Brassica napus HOM05D009441 ORTHO05D010605 1.1e-11 73.9 52 51.9
AT5G61100 Arabidopsis thaliana HOM05D009441 ORTHO05D010605 2.4e-11 72.8 63 46.0
C07p44810 Brassica napus HOM05D007909 ORTHO05D010605 2.4e-11 72.8 54 55.6
BolC2t12185H Brassica oleracea HOM05D009441 ORTHO05D010605 2.4e-11 72.8 52 53.8
TAR264G0006 Trochodendron aralioides HOM05D001093 ORTHO05D000743 3.1e-11 72.4 80 36.2
A03p46770 Brassica napus HOM05D007909 ORTHO05D010605 4.1e-11 72.0 90 42.2
BraA03t13799Z Brassica rapa HOM05D007909 ORTHO05D010605 4.1e-11 72.0 90 42.2
Carub.0008s2177 Capsella rubella HOM05D009441 ORTHO05D010605 4.1e-11 72.0 46 60.9
Duzib205G1796 Durio zibethinus HOM05D001093 ORTHO05D010605 2.0e-10 69.7 75 42.7
Gohir.A12G182300 Gossypium hirsutum HOM05D004287 ORTHO05D004569 2.6e-10 69.3 67 46.3
Thhalv10015590m.g Eutrema salsugineum HOM05D009441 ORTHO05D010605 5.9e-10 68.2 41 65.9
Gohir.D12G185200 Gossypium hirsutum HOM05D004287 ORTHO05D004569 5.9e-10 68.2 67 44.8
Gorai.008G198600 Gossypium raimondii HOM05D004287 ORTHO05D004569 5.9e-10 68.2 67 44.8
MBI19_g34071_MAGBIO Magnolia biondii HOM05D001093 ORTHO05D010605 5.9e-10 68.2 80 35.0
MBI19_g36253_MAGBIO Magnolia biondii HOM05D001093 ORTHO05D010605 5.9e-10 68.2 80 35.0
Duzib084G0418 Durio zibethinus HOM05D000539 ORTHO05D000233 7.7e-10 67.8 67 43.3
QL10p019356 Quercus lobata HOM05D001093 ORTHO05D010605 1.0e-09 67.4 60 41.7
TPR.G12267 Trifolium pratense HOM05D008195 ORTHO05D010605 1.3e-09 67.0 50 54.0
CsaV3_1G033720 Cucumis sativus L. HOM05D034807 ORTHO05D034786 1.7e-09 66.6 59 44.1
Medtr3g025330 Medicago truncatula HOM05D001093 ORTHO05D010605 2.2e-09 66.2 80 36.2
Manes.06G085200 Manihot esculenta HOM05D007909 ORTHO05D010605 2.9e-09 65.9 45 55.6
Prupe.5G204000 Prunus persica HOM05D001093 ORTHO05D010605 2.9e-09 65.9 72 43.1
BcaC03g18076 Brassica carinata HOM05D009441 ORTHO05D010605 3.8e-09 65.5 125 31.2
Gohir.A12G208600 Gossypium hirsutum HOM05D001093 ORTHO05D000743 3.8e-09 65.5 63 46.0
THA.LOC104798461 Tarenaya hassleriana HOM05D001093 ORTHO05D000743 3.8e-09 65.5 66 43.9
A02p41400 Brassica napus HOM05D007909 ORTHO05D010605 5.0e-09 65.1 65 44.6
COL.COLO4_17047 Corchorus olitorius HOM05D001093 ORTHO05D000743 5.0e-09 65.1 61 47.5
Gohir.D12G211200 Gossypium hirsutum HOM05D001093 ORTHO05D000743 5.0e-09 65.1 63 44.4
ECA247G2835 Erigeron canadensis HOM05D001093 ORTHO05D000743 6.5e-09 64.7 99 34.3
Solyc06g066140.3 Solanum lycopersicum HOM05D008195 ORTHO05D000743 6.5e-09 64.7 66 42.4
AagrBONN_evm.TU.Sc2ySwM_117.925 Anthoceros agrestis HOM05D001093 ORTHO05D000743 8.5e-09 64.3 91 35.2
Gorai.008G226700 Gossypium raimondii HOM05D001093 ORTHO05D000743 8.5e-09 64.3 46 54.3
Duzib205G0279 Durio zibethinus HOM05D001093 ORTHO05D000743 1.1e-08 63.9 80 40.0
Duzib068G1103 Durio zibethinus HOM05D001093 ORTHO05D000743 1.5e-08 63.5 63 42.9
Carub.0008s2178 Capsella rubella HOM05D009441 ORTHO05D010605 1.9e-08 63.2 47 46.8
Duzib084G1408 Durio zibethinus HOM05D001093 ORTHO05D000743 1.9e-08 63.2 93 35.5
HanXRQChr02g0044731 Helianthus annuus HOM05D001093 ORTHO05D000743 1.9e-08 63.2 85 36.5
Lj1g0000797 Lotus japonicus HOM05D007909 ORTHO05D000743 1.9e-08 63.2 52 44.2
Nn3g17441 Nelumbo nucifera HOM05D001093 ORTHO05D000743 1.9e-08 63.2 49 49.0
Oeu047262.2 Olea europaea HOM05D001093 ORTHO05D000743 1.9e-08 63.2 83 32.5
BolC2t12184H Brassica oleracea HOM05D009441 ORTHO05D010605 2.5e-08 62.8 118 31.4
ClCG04G011830 Citrullus lanatus HOM05D000020 ORTHO05D000743 2.5e-08 62.8 57 45.6
Ciclev10020157m.g Citrus clementina HOM05D001093 ORTHO05D010605 2.5e-08 62.8 61 47.5
PGSC0003DMG400020472 Solanum tuberosum HOM05D008195 ORTHO05D000743 2.5e-08 62.8 66 42.4
AL8G37750 Arabidopsis lyrata HOM05D009441 ORTHO05D010605 3.2e-08 62.4 48 54.2
Dinv17406 Davidia involucrata HOM05D001093 ORTHO05D000743 3.2e-08 62.4 71 36.6
Sed0000006 Sechium edule HOM05D000791 ORTHO05D001863 3.2e-08 62.4 49 42.9
PGSC0003DMG400016768 Solanum tuberosum HOM05D008195 ORTHO05D010950 4.2e-08 62.0 66 39.4
PGSC0003DMG400037001 Solanum tuberosum HOM05D008195 ORTHO05D000743 4.2e-08 62.0 63 41.3
Thecc.03G228500 Theobroma cacao HOM05D001093 ORTHO05D000743 5.5e-08 61.6 46 50.0
A02p41410 Brassica napus HOM05D009441 ORTHO05D010605 7.2e-08 61.2 118 30.5
BraA02t09084Z Brassica rapa HOM05D009441 ORTHO05D010605 7.2e-08 61.2 121 31.4
Phvul.009G191600 Phaseolus vulgaris HOM05D007909 ORTHO05D000743 7.2e-08 61.2 61 41.0
Sabra03G0060600 Salix brachista HOM05D001093 ORTHO05D000743 7.2e-08 61.2 66 40.9
vmacro16499 Vaccinium macrocarpon HOM05D001093 ORTHO05D000743 7.2e-08 61.2 63 38.1
CSS0022126 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 9.4e-08 60.8 74 37.8
RcHm_v2.0_Chr1g0384581 Rosa chinensis HOM05D001093 ORTHO05D000743 9.4e-08 60.8 110 30.9
Duzib106G0988 Durio zibethinus HOM05D001093 ORTHO05D000743 1.2e-07 60.5 61 42.6
Hund02591 Selenicereus undatus HOM05D001093 ORTHO05D000743 1.2e-07 60.5 125 29.6
Atru.chr9.429 Acer truncatum HOM05D007909 ORTHO05D000743 1.6e-07 60.1 54 40.7
Dinv22785 Davidia involucrata HOM05D001093 ORTHO05D000743 1.6e-07 60.1 61 37.7
Sopen03g034220 Solanum pennellii HOM05D008195 ORTHO05D000743 1.6e-07 60.1 63 38.1
CSS0033439 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 2.7e-07 59.3 70 37.1
CsaV3_1G005950 Cucumis sativus L. HOM05D007909 ORTHO05D000743 2.7e-07 59.3 55 45.5
Potri.003G091000 Populus trichocarpa HOM05D001093 ORTHO05D000743 2.7e-07 59.3 64 40.6
TWI60G1066 Tripterygium wilfordii HOM05D001093 ORTHO05D000743 3.6e-07 58.9 51 43.1
CSS0005519 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 4.7e-07 58.5 77 35.1
Lsat_1_v5_gn_1_13501 Lactuca sativa HOM05D001093 ORTHO05D010605 6.1e-07 58.2 69 40.6
MSTRG.4449 Avicennia marina HOM05D001093 ORTHO05D010605 8.0e-07 57.8 61 39.3
Duzib205G0904 Durio zibethinus HOM05D007909 ORTHO05D000743 8.0e-07 57.8 58 44.8
Sed0028074 Sechium edule HOM05D007909 ORTHO05D000743 8.0e-07 57.8 45 48.9
Hund14401 Selenicereus undatus HOM05D001093 ORTHO05D000743 8.0e-07 57.8 70 32.9
MELO3C002025.2 Cucumis melo HOM05D007909 ORTHO05D000743 1.0e-06 57.4 56 48.2
Prupe.5G038800 Prunus persica HOM05D001093 ORTHO05D000743 1.0e-06 57.4 46 47.8
PGSC0003DMG400026134 Solanum tuberosum HOM05D008195 ORTHO05D000743 1.4e-06 57.0 71 38.0
TWI60G0473 Tripterygium wilfordii HOM05D007909 ORTHO05D000743 1.4e-06 57.0 56 37.5
Psat2g173080 Pisum sativum HOM05D001093 ORTHO05D000743 1.8e-06 56.6 45 44.4
FvH4_7g34220 Fragaria vesca HOM05D001093 ORTHO05D000743 2.3e-06 56.2 61 41.0
FAN01G2535 Fragaria x ananassa HOM05D001093 ORTHO05D000743 2.3e-06 56.2 61 41.0
FAN03G3313 Fragaria x ananassa HOM05D001093 ORTHO05D000743 2.3e-06 56.2 118 29.7
FAN10G1498 Fragaria x ananassa HOM05D001093 ORTHO05D000743 2.3e-06 56.2 61 41.0
Rhsim12G0151100 Rhododendron simsii HOM05D001093 ORTHO05D000743 2.3e-06 56.2 47 46.8
HPP92_014619 Vanilla planifolia HOM05D001093 ORTHO05D000743 2.3e-06 56.2 47 44.7
Aqoxy3G03628 Aquilegia oxysepala HOM05D001093 ORTHO05D000743 3.0e-06 55.8 139 27.3
DCAR_010526 Daucus carota HOM05D001093 ORTHO05D000743 5.2e-06 55.1 57 42.1
Solyc06g066200.2 Solanum lycopersicum HOM05D008195 ORTHO05D000743 6.7e-06 54.7 61 34.4
HPP92_020960 Vanilla planifolia HOM05D001093 ORTHO05D000743 6.7e-06 54.7 47 44.7
BcaNung00051 Brassica carinata HOM05D001093 ORTHO05D011195 8.8e-06 54.3 54 40.7
Lj2g0016244 Lotus japonicus HOM05D001093 ORTHO05D000743 8.8e-06 54.3 50 40.0


User provided reference genes

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